KCC000614A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000614A_C01 KCC000614A_c01
ctacaCTTCTCGACGCATACAAATACAGTTAGACCACAACGCAGCCAAGCTTGCAGTCGC
AACTTGCAACAACATACTGCTTTGCGCGCGCTCCAACGACTTACGCCTCTGCCCGCGCCA
TAAGCTTCACTCAATCCTAGGCTAGTGTACAGGCAATCGTCGGGCTAGGAGCCGCGCAGC
CGCTTGTCGGCGCGTTCCCCTCCGAATTCAAACTTCAGCCACCCGACTCCGCGAGAATGA
CGAGCATGTATGTTCTCAAGCGCGATGGCCGGCAGGAGCCGGTCATGTTTGACAAGATTA
CAGCGCGCATCGTCAAGCTGGCGTATGGCCTGAACCCGGACTTCTGCGACGCGGTGCTGG
TCGCCCAGAAGGTGGCTGGTGGTGTCTACAAGGGTGTCACCACCTCTGAGCTGGATGAGC
TGGCTGCTGAGACCGCTGCCGCGCTCACCTCCACCCACCCCGATTATGCCATCCTCGCGG
CGCGTATCGCTGTGTCCAACCTGCACAAGAACACCGAGAAGTCGTTCAGCAAGACCATGG
ACAAGCTGTACACCTACCGCAATCCCCGCAACGGCGAGGAGGCTGCGCTCATTGCCAAGG
ATGTCTATGACATCATTGTGCAGAACGCCCAGCGTCTGGACAGCGAGATCCGCTACGACC
GCGACTTTGACTACGACTACTTTGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTGCGCA
TCGACGGCAAGGTGGTGGAGCGCCCCCAGCACATGCTCATGCGCGTGGCGGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000614A_C01 KCC000614A_c01
         (773 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit ...   268  7e-71
gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit ...   267  2e-70
emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]          265  6e-70
emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]          264  1e-69
ref|NP_179770.1| ribonucleoside-diphosphate reductase large subu...   264  1e-69

>gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  268 bits (685), Expect = 7e-71
 Identities = 134/176 (76%), Positives = 156/176 (88%)
 Frame = +3

Query: 246 MYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDELA 425
           MYV+KR+GRQE V FDKITAR+ KL+YGL+ D CDAVLVAQKV  GVYKGVTTS+LDELA
Sbjct: 1   MYVVKRNGRQETVHFDKITARLKKLSYGLSSDHCDAVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 426 AETAAALTSTHPDYAILAARIAVSNLHKNTEKSFSKTMDKLYTYRNPRNGEEAALIAKDV 605
           AETAAA+T+ HPDYA LAARIAVSNLHKNT+KSFS+T+  +Y + N R+G +A LIA DV
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHFNERSGLKAPLIADDV 120

Query: 606 YDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHMLMRVAV 773
           Y+II++NA RLDSEI YDRDFDYDYFGFKTLERSYLL++ G+V+ERPQHMLMRVAV
Sbjct: 121 YEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGQVLERPQHMLMRVAV 176

>gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  267 bits (682), Expect = 2e-70
 Identities = 133/176 (75%), Positives = 154/176 (86%)
 Frame = +3

Query: 246 MYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDELA 425
           MYV+KRDGRQE V FDKITAR+ KL+YGL+ + CD VLV+QKV  GVYKGVTTS+LDELA
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 426 AETAAALTSTHPDYAILAARIAVSNLHKNTEKSFSKTMDKLYTYRNPRNGEEAALIAKDV 605
           AETAAA+T+ HPDYA LAARIAVSNLHKNT+KSFS+T+  +Y + N R+  +A LIA DV
Sbjct: 61  AETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETIKVMYYHFNERSAMKAPLIADDV 120

Query: 606 YDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHMLMRVAV 773
           Y+II++NA RLDSEI YDRDFDYDYFGFKTLERSYLL++ GKVVERPQHMLMRVAV
Sbjct: 121 YEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAV 176

>emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  265 bits (677), Expect = 6e-70
 Identities = 132/176 (75%), Positives = 155/176 (88%)
 Frame = +3

Query: 246 MYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDELA 425
           MYV KRDGRQE V FDKITAR+ KL+YGL+P+ CD VLV+QKV  GVYKGVTTS+LDELA
Sbjct: 1   MYVWKRDGRQETVHFDKITARLKKLSYGLSPEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 426 AETAAALTSTHPDYAILAARIAVSNLHKNTEKSFSKTMDKLYTYRNPRNGEEAALIAKDV 605
           AETAAALT+ HPDYA LAARIAVSNLHKNT+KSFS+T+  +Y + + R+G +A LI+ +V
Sbjct: 61  AETAAALTANHPDYASLAARIAVSNLHKNTKKSFSETVKDMYNHISERSGLKAPLISDEV 120

Query: 606 YDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHMLMRVAV 773
           Y+II++NA RLDSEI YDRDFDYDYFGFKTLERSYLL+I+G VVERPQHMLMRV+V
Sbjct: 121 YEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKINGNVVERPQHMLMRVSV 176

>emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  264 bits (675), Expect = 1e-69
 Identities = 131/176 (74%), Positives = 154/176 (87%)
 Frame = +3

Query: 246 MYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDELA 425
           MYV+KRDGRQE V FDKITAR+ KL+YGL+PD CD VLVAQKV  GVYKGVTTS+LDELA
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLSYGLSPDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 426 AETAAALTSTHPDYAILAARIAVSNLHKNTEKSFSKTMDKLYTYRNPRNGEEAALIAKDV 605
           AETAAA+T+ HPDYA LAARIAVSNLHK  +KSFS+T+  +Y + + R+G +A L++ +V
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHKTPKKSFSETIKDMYYHVSERSGLKAPLVSDEV 120

Query: 606 YDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHMLMRVAV 773
           Y+II++NA RLDSEI YDRDFDYDYFGFKTLERSYLL+I GKVVERPQHMLMRV+V
Sbjct: 121 YEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLMRVSV 176

>ref|NP_179770.1| ribonucleoside-diphosphate reductase large subunit -related
           [Arabidopsis thaliana] gi|25285837|pir||B84605
           hypothetical protein At2g21790 [imported] - Arabidopsis
           thaliana gi|4417273|gb|AAD20398.1| putative
           ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana] gi|14334814|gb|AAK59585.1|
           putative ribonucleoside-diphosphate reductase large
           subunit [Arabidopsis thaliana]
           gi|30793895|gb|AAP40400.1| putative
           ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
          Length = 816

 Score =  264 bits (674), Expect = 1e-69
 Identities = 132/176 (75%), Positives = 153/176 (86%)
 Frame = +3

Query: 246 MYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDELA 425
           MYV+KRDGRQE V FDKITAR+ KL+YGL+ D CD VLVAQKV  GVYKGVTTS+LDELA
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 426 AETAAALTSTHPDYAILAARIAVSNLHKNTEKSFSKTMDKLYTYRNPRNGEEAALIAKDV 605
           AETAAA+T  HPDYA LAARIAVSNLHKNT+KSFS+T+  ++ + N R+G ++ LIA DV
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120

Query: 606 YDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHMLMRVAV 773
           ++II+QNA RLDSEI YDRDF+YDYFGFKTLERSYLL++ G VVERPQHMLMRVAV
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAV 176



EST assemble image


clone accession position
1 LCL010e04_r AV626518 1 367
2 LCL016b09_r AV626830 6 294
3 MXL006c01_r BP093288 11 519
4 MXL099b07_r BP098787 11 513
5 LCL040b03_r AV628324 14 552
6 MXL091f12_r BP098333 18 394
7 LCL034h08_r AV627985 20 352
8 MXL035a01_r BP095048 20 496
9 HCL072e03_r AV643598 23 531
10 MXL022h02_r BP094423 28 297
11 LCL061d02_r AV629582 230 673
12 CL48a09_r AV395785 261 773
13 LCL002a10_r AV626078 314 650




Chlamydomonas reinhardtii
Kazusa DNA Research Institute