KCC000610A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000610A_C01 KCC000610A_c01
cgCCGAGTACAAGATTACAATCCGTCAGATTCTCACCGAGACGACACCATGCAGCCGCGG
GCGCCCCGGCGACGCTGTGGTGAAAAGAATCTTGGGCCGCGAGCCCCAAACGCACCCACC
AACACACGGCGCAATTTGCGCCTGACATAAGTTCTAACAAGATTAGCTAACCAGTGACAT
GCGCAAGCGCGCGTTGGGGCCCACGCAGTCCATGCAATCGTGCGCTGTAACAGCGGTCGA
CCTAGTTGTTGTTCACTTCAGCCGCACCGCCCGTGCATACATGCCTGCTTCTTCGCGTCT
AAAACTAGGCAACACCGAAATGCCGCACAGCAACGTGCGATCCCTGGACCCTGTCGCTGC
ACACCAGCTGCCCCAACACGGGGTAAGGGCGGGGGCACACTTGCCGTAACAAACAACGAA
CCCCACGAGCTCGCATCCAGCGTCAACCCCGCGTGATACTAGCGGCCACCGGTGCTGCTG
CCGCTGTGCTTCACCCGTntcttccattcctccgtct


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000610A_C01 KCC000610A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL48902.1| RE30918p [Drosophila melanogaster]                      35  0.57
pir||TWFF transcription factor Krueppel - fruit fly (Drosophila ...    35  0.74
sp|P07247|KRUP_DROME Krueppel protein gi|8159|emb|CAA27148.1| Kr...    35  0.74
ref|NP_523867.1| Kruppel CG3340-PA [Drosophila melanogaster] gi|...    35  0.74
ref|NP_508681.2| metalloprotease ADAM/reprolysin M12B and thromb...    33  1.6

>gb|AAL48902.1| RE30918p [Drosophila melanogaster]
          Length = 501

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 30/112 (26%), Positives = 42/112 (36%), Gaps = 11/112 (9%)
 Frame = +2

Query: 170 TSDMRKRALGPTQSMQSCAVTAV-----DLVVVHFSRTARAYMPASSRLKLGNTEMPHSN 334
           TS     A+ P   +Q  A  +         ++  +R A A+M       L NT  PH+ 
Sbjct: 42  TSATSAAAIYPAMGLQQAAAASAFGMLSPTQLLAANRQAAAFMAQLPMSTLANTLFPHNP 101

Query: 335 VRSLDPVAAHQ-LPQHGVR-----AGAHLP*QTTNPTSSHPASTPRDTSGHR 472
                  AA Q LP  G       A  H P  T   +  HP ++P  T  H+
Sbjct: 102 AALFGAWAAQQSLPPQGTHLHSPPASPHSPLSTPLGSGKHPLNSPNSTPQHQ 153

>pir||TWFF transcription factor Krueppel - fruit fly (Drosophila melanogaster)
          Length = 466

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
 Frame = +2

Query: 170 TSDMRKRALGPTQSMQSCAVTAV-----DLVVVHFSRTARAYMPASSRLKLGNTEMPHSN 334
           TS     A+ P   +Q  A  +         ++  +R A A+M       L NT  PH+ 
Sbjct: 42  TSATSAAAIYPAMGLQQAAAASAFGMLSPTQLLAANRQAAAFMAQLPMSTLANTLFPHNP 101

Query: 335 VRSLDPVAAHQ-LPQHGVR-----AGAHLP*QTTNPTSSHPASTPRDTSGH 469
                  AA Q LP  G       A  H P  T   +  HP ++P  T  H
Sbjct: 102 AALFGAWAAQQSLPPQGTHLHSPPASPHSPLSTPLGSGKHPLNSPNSTPQH 152

>sp|P07247|KRUP_DROME Krueppel protein gi|8159|emb|CAA27148.1| Kr polypeptide [Drosophila
           melanogaster] gi|224875|prf||1202348A Krueppel gene
          Length = 466

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
 Frame = +2

Query: 170 TSDMRKRALGPTQSMQSCAVTAV-----DLVVVHFSRTARAYMPASSRLKLGNTEMPHSN 334
           TS     A+ P   +Q  A  +         ++  +R A A+M       L NT  PH+ 
Sbjct: 42  TSATSAAAIYPAMGLQQAAAASAFGMLSPTQLLAANRQAAAFMAQLPMSTLANTLFPHNP 101

Query: 335 VRSLDPVAAHQ-LPQHGVR-----AGAHLP*QTTNPTSSHPASTPRDTSGH 469
                  AA Q LP  G       A  H P  T   +  HP ++P  T  H
Sbjct: 102 AALFGAWAAQQSLPPQGTHLHSPPASPHSPLSTPLGSGKHPLNSPNSTPQH 152

>ref|NP_523867.1| Kruppel CG3340-PA [Drosophila melanogaster]
           gi|7291903|gb|AAF47321.1| CG3340-PA [Drosophila
           melanogaster]
          Length = 502

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
 Frame = +2

Query: 170 TSDMRKRALGPTQSMQSCAVTAV-----DLVVVHFSRTARAYMPASSRLKLGNTEMPHSN 334
           TS     A+ P   +Q  A  +         ++  +R A A+M       L NT  PH+ 
Sbjct: 42  TSATSAAAIYPAMGLQQAAAASAFGMLSPTQLLAANRQAAAFMAQLPMSTLANTLFPHNP 101

Query: 335 VRSLDPVAAHQ-LPQHGVR-----AGAHLP*QTTNPTSSHPASTPRDTSGH 469
                  AA Q LP  G       A  H P  T   +  HP ++P  T  H
Sbjct: 102 AALFGAWAAQQSLPPQGTHLHSPPASPHSPLSTPLGSGKHPLNSPNSTPQH 152

>ref|NP_508681.2| metalloprotease ADAM/reprolysin M12B and thrombospondin, type I
           family member (XE555) [Caenorhabditis elegans]
           gi|18030184|gb|AAA83600.2| Hypothetical protein T19D2.1
           [Caenorhabditis elegans]
          Length = 872

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 332 CCAAFRCCLVLDAKKQACMHGRCG*SEQQLGRPLLQRTIAWTAWAPTRACA 180
           C AAF  C   D+  + C   RC  SE    RPL+ R+  WT W+   +C+
Sbjct: 792 CFAAF--CRGKDSDVRNCYGQRC--SETTTRRPLVNRSGLWTGWSSWSSCS 838



EST assemble image


clone accession position
1 CL47g09_r AV395694 1 517
2 HCL057h03_r AV642782 3 464




Chlamydomonas reinhardtii
Kazusa DNA Research Institute