KCC000607A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000607A_C01 KCC000607A_c01
CACAAGGCACGATTTGCATGTCATTCTTCCGTGCGCATAGATTGCGCAGGACCTGGCTGC
AAGCATGGTCCCTTCGATTTTGACCCCACGGCAATCCTCAGCATGTCTTCACTATGTCAC
GCAAAACTTATTTTTCAGGGCCGACAAAGCGCAAACCGGGCGGGAATGTGGGTGAGTGTG
CGCCAAGTCCGCGCCCGGCCGCCGCTACGCTCCATTCTCGGACGAGTCCGGATTGTGCCG
TCAGGCATAAGACTGCCCCACCCCGTTTAAGCTGCCTGCTTGTCGCCTTCTCTGGCCACA
GCCGCAACCTTGGGAGCGGGCACAGTCCCCGCACAACCCAATGCCTCTCTCGCAACATGG
CGTGCTTCACTACTACCCTTGCCAAGTCCGCTCATGCTTCCTAGAAAGCTTGTCTGCCCT
GAGGTGTCGATGTGTTAGATAAGAAATATGGCTACCGTACACGCACACACCCATGCCATG
CCACTGCAATGACAAGAGAATACCACGAGCCCAAGGAATACACACACACGGAACACGGGC
A


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000607A_C01 KCC000607A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_821703.1| putative integral membrane protein [Streptomyce...    34  1.4
ref|NP_519316.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] g...    33  2.4
ref|NP_860464.1| valyl-tRNA synthetase [Helicobacter hepaticus A...    33  3.2
ref|NP_631754.1| conserved hypothetical protein [Streptomyces co...    33  3.2
ref|NP_079162.1| hypothetical protein FLJ14280 [Homo sapiens] gi...    33  3.2

>ref|NP_821703.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680] gi|29604167|dbj|BAC68238.1| putative integral
           membrane protein [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 25/70 (35%), Positives = 28/70 (39%), Gaps = 1/70 (1%)
 Frame = -3

Query: 368 EARHVAREALGCAGTVPAPKVAAVAREGDKQAA*TGWGSLMPD-GTIRTRPRMERSGGRA 192
           EA  V R+ L  A T  AP VAA+          T W  L P      T PR  R   R 
Sbjct: 34  EACGVCRDRLSAAVTAEAPAVAALVG--------TVWSGLEPQLAATATMPRQRRWSARL 85

Query: 191 RTWRTLTHIP 162
             W T T +P
Sbjct: 86  SRWMTPTMMP 95

>ref|NP_519316.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
           gi|17428209|emb|CAD14897.1| HYPOTHETICAL PROTEIN
           [Ralstonia solanacearum]
          Length = 501

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 319 GTVPAQPNASLATWRASLLPLPSPLMLPRKLVCP 420
           G V A+P  SL  +R  L P P PL+ PR++  P
Sbjct: 7   GGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARP 40

>ref|NP_860464.1| valyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
           gi|32262482|gb|AAP77530.1| valyl-tRNA synthetase
           [Helicobacter hepaticus ATCC 51449]
          Length = 899

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 317 RAQSPHNPMPLSQHGVLHYYPCQVRSCFLESLSALRCRCVR*EIWLPYTHTPMPCHCNDK 496
           + ++ HN +    +G LH+YP Q  + +   +  L+  C+  ++W  +      C C +K
Sbjct: 375 KKETAHNAIQRVNNGELHFYPAQWLNNYNAWMRELKDWCISRQLWWGHRIPVWYCECGNK 434

>ref|NP_631754.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
           gi|12311708|emb|CAC22724.1| conserved hypothetical
           protein [Streptomyces coelicolor A3(2)]
          Length = 151

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 9/63 (14%)
 Frame = -2

Query: 540 ARVPCVCIPWARGILLSLQWH---GMGVCVYGSHISYL--THRHLRADKLS----RKHER 388
           AR+    +PW    L  L WH   G G+ ++G  + YL      +   KL+    R+H+R
Sbjct: 87  ARIAMKLVPWGDATLFVLDWHALRGPGIRMHGLPVDYLVEVRNGMMLTKLARIAVREHDR 146

Query: 387 TWQ 379
           T Q
Sbjct: 147 TLQ 149

>ref|NP_079162.1| hypothetical protein FLJ14280 [Homo sapiens]
           gi|10436705|dbj|BAB14892.1| unnamed protein product
           [Homo sapiens]
          Length = 257

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 12/122 (9%)
 Frame = +3

Query: 84  PHGNPQHVFTMSRKTYFSGPTKRKPGGNVGECAPSPRPAAATLHSRTSPDCAVRHKTAPP 263
           PHGN        R      P  R+PGG      P+PRP A       S DC  R     P
Sbjct: 100 PHGNTTASTAPPRH-----PRPRRPGGPA--LRPTPRPCAGPAPPPASRDCRCRRPRRWP 152

Query: 264 RL------------SCLLVAFSGHSRNLGSGHSPRTTQCLSRNMACFTTTLAKSAHAS*K 407
           R             SC   A+S     L S  +     C +R       T A  + A+  
Sbjct: 153 RAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCASPSAAASS 212

Query: 408 AC 413
            C
Sbjct: 213 CC 214



EST assemble image


clone accession position
1 MX203d11_r BP089235 1 459
2 HCL065d05_r AV643195 142 616
3 LCL037f12_r AV628163 146 346
4 LCL058e02_r AV629421 148 682
5 CL47d01_r AV395681 157 681




Chlamydomonas reinhardtii
Kazusa DNA Research Institute