KCC000603A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000603A_C01 KCC000603A_c01
CCAAACTGTCCTCTGCAACCGAGAACGGACGATTGTTTCGCGCGCAGCACCCCCTGCGGG
TTTCGCCAACCTTTCAACCCATCGACCTTCCAAATGGCTTCCCTGGCGTATGTAGCAGCT
AGATAAAAGACCGGGCGGTCTTCCGTAGAGCGTGGAAGCTGAAGAGGAGAGGGAGCTCGC
CTTAAAATGAAATGCCACTGCGCGCACTGGCCTATGCGGCGATGGTTCCGCCTGCTATGG
TGGTGCCTGTGCCTGCTCACGTTCATCGCCCTGCCGCTGACCATCTGGGAGTTTCAAAAG
CAGCACTACGACGTGCACTACCAAGCCTGGTTCATAGGCGGCATCTTTGTCATCCTGTCC
ATGCCCATTTCGATCTATGAGATCGCTATGCACACCGAGTACTACACTCAGCCGCGGCTG
CAGAAGCACGTGATCCGCATCTTGCTCATGGTGCCCATCTACGCCGTGGACGCGTGGTTC
GCGCTGAGGTTCCGCAGGTCTCGCGAGTACCTTGACCCCATTCGCGAGTGCTACGAGGCG
TTCGTCATCTACTCCTTCTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000603A_C01 KCC000603A_c01
         (561 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_060711.1| hypothetical protein FLJ10846 [Homo sapiens] gi...   130  9e-30
gb|AAH46128.1| FLJ10846 protein [Homo sapiens]                        130  9e-30
dbj|BAC28273.1| unnamed protein product [Mus musculus]                129  3e-29
ref|NP_663574.1| similar to CG5850 gene product [Mus musculus] g...   129  3e-29
ref|NP_847900.1| hypothetical protein FLJ10846-like [Rattus norv...   128  6e-29

>ref|NP_060711.1| hypothetical protein FLJ10846 [Homo sapiens]
           gi|7023136|dbj|BAA91851.1| unnamed protein product [Homo
           sapiens]
          Length = 438

 Score =  130 bits (328), Expect = 9e-30
 Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
 Frame = +1

Query: 187 MKCHCAHWPMRRWFRLLWWCLCLLTFI-ALPLTIWEFQKQHYDVHYQAWFIGGIFVILSM 363
           M C C     R+W R L   + L++ + A+PL +WE QK    +H +AWFI GIF++L++
Sbjct: 1   MPCTCTWRNWRQWIRPLVAVIYLVSIVVAVPLCVWELQKLEVGIHTKAWFIAGIFLLLTI 60

Query: 364 PISIYEIAMHTEYYTQPRLQKHVIRILLMVPIYAVDAWFALRFRRSREYLDPIRECYEAF 543
           PIS++ I  H  +YTQP LQK +IRIL MVPIY++D+W AL++     Y+D  RECYEA+
Sbjct: 61  PISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIALKYPGIAIYVDTCRECYEAY 120

Query: 544 VIYSF 558
           VIY+F
Sbjct: 121 VIYNF 125

>gb|AAH46128.1| FLJ10846 protein [Homo sapiens]
          Length = 261

 Score =  130 bits (328), Expect = 9e-30
 Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
 Frame = +1

Query: 187 MKCHCAHWPMRRWFRLLWWCLCLLTFI-ALPLTIWEFQKQHYDVHYQAWFIGGIFVILSM 363
           M C C     R+W R L   + L++ + A+PL +WE QK    +H +AWFI GIF++L++
Sbjct: 1   MPCTCTWRNWRQWIRPLVAVIYLVSIVVAVPLCVWELQKLEVGIHTKAWFIAGIFLLLTI 60

Query: 364 PISIYEIAMHTEYYTQPRLQKHVIRILLMVPIYAVDAWFALRFRRSREYLDPIRECYEAF 543
           PIS++ I  H  +YTQP LQK +IRIL MVPIY++D+W AL++     Y+D  RECYEA+
Sbjct: 61  PISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIALKYPGIAIYVDTCRECYEAY 120

Query: 544 VIYSF 558
           VIY+F
Sbjct: 121 VIYNF 125

>dbj|BAC28273.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  129 bits (324), Expect = 3e-29
 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
 Frame = +1

Query: 187 MKCHCAHWPMRRWFR---LLWWCLCLLTFIALPLTIWEFQKQHYDVHYQAWFIGGIFVIL 357
           M C C     RRW R   +L++   +L  +A+P+ IW+FQK    +H ++WFI GIF++L
Sbjct: 1   MPCACNRSNWRRWIRPLLVLFYATTIL--VAVPICIWKFQKMKVGMHTKSWFIAGIFLLL 58

Query: 358 SMPISIYEIAMHTEYYTQPRLQKHVIRILLMVPIYAVDAWFALRFRRSREYLDPIRECYE 537
           ++P+S++ I  H  +YTQP LQK +IRIL MVPIY+VD+W AL + +   Y+D  RECYE
Sbjct: 59  TIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPKIAIYVDTWRECYE 118

Query: 538 AFVIYSF 558
           A+VIY+F
Sbjct: 119 AYVIYNF 125

>ref|NP_663574.1| similar to CG5850 gene product [Mus musculus]
           gi|13278516|gb|AAH04056.1| Similar to CG5850 gene
           product [Mus musculus]
          Length = 622

 Score =  129 bits (324), Expect = 3e-29
 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
 Frame = +1

Query: 187 MKCHCAHWPMRRWFR---LLWWCLCLLTFIALPLTIWEFQKQHYDVHYQAWFIGGIFVIL 357
           M C C     RRW R   +L++   +L  +A+P+ IW+FQK    +H ++WFI GIF++L
Sbjct: 1   MPCACNRSNWRRWIRPLLVLFYATTIL--VAVPICIWKFQKMKVGMHTKSWFIAGIFLLL 58

Query: 358 SMPISIYEIAMHTEYYTQPRLQKHVIRILLMVPIYAVDAWFALRFRRSREYLDPIRECYE 537
           ++P+S++ I  H  +YTQP LQK +IRIL MVPIY+VD+W AL + +   Y+D  RECYE
Sbjct: 59  TIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPKIAIYVDTWRECYE 118

Query: 538 AFVIYSF 558
           A+VIY+F
Sbjct: 119 AYVIYNF 125

>ref|NP_847900.1| hypothetical protein FLJ10846-like [Rattus norvegicus]
           gi|29469650|gb|AAO73557.1| hypothetical protein
           FLJ10846-like protein [Rattus norvegicus]
          Length = 503

 Score =  128 bits (321), Expect = 6e-29
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
 Frame = +1

Query: 187 MKCHCAHWPMRRWFR-LLWWCLCLLTFIALPLTIWEFQKQHYDVHYQAWFIGGIFVILSM 363
           M C C     R+W R LL     L   + +P+ IWEFQK    +H + WFI GIF++L++
Sbjct: 1   MPCACNRNNWRKWIRPLLILLYALAILVTVPVCIWEFQKLKVGIHTKVWFIAGIFLLLTI 60

Query: 364 PISIYEIAMHTEYYTQPRLQKHVIRILLMVPIYAVDAWFALRFRRSREYLDPIRECYEAF 543
           P+S+  I  H  +YTQP LQK +IRIL MVPIY++D+W AL++ +   Y+D  RECYEA+
Sbjct: 61  PVSMCGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWVALKYPKIAIYVDTWRECYEAY 120

Query: 544 VIYSF 558
           VIY+F
Sbjct: 121 VIYNF 125



EST assemble image


clone accession position
1 CL47b03_r AV395682 1 561
2 LCL078d07_r AV630405 1 508
3 HCL057b12_r AV642752 4 487
4 HCL011e12_r AV640171 8 131




Chlamydomonas reinhardtii
Kazusa DNA Research Institute