KCC000602A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000602A_C01 KCC000602A_c01
GTTCATATACGTTGCTGCCTTTATCGCTGCTGACCACTTTGCCGAAAGTCTCGTTCCGAA
GCACAAATGGCACTGCTGCACAAGACCCAGCTCAACGCCGGCGCGCGCCGGGCTTCTCGC
CCGGCCGTGGCTCGCGTGTCTACTGTTCGTGTGCAGGCTACCGTTGCCATGCCTTCGCCC
ACCTCCACGTTCGCGCAGCCCCACGGCCGCGTCTTCAATTTCAGCGCGGGCCCTGCCGTC
CTTCCGGTTGATGTGCTGGAGCGTGCCCAGGCCGAGCTGCTCAACTGGCACGGCAGCGGC
ATGAGCATTATGGAGATGAGCCACCGTGGCAAGGAGTTCGAGAGCGTGATTCAGAAGGCC
GAGGCCGACCTGCGCACGCTGCTCAACATCCCCTCCAACTACAAGGTGCTCTTCCTCCAG
GGCGGTGCCTCCACCCAGTTCTCCATGATCCCCCTCAACCTGGCGAAGGCTGGTGAGACT
GTGGATTACGTTGTGACCGGCGCCTGGTCCAAGAAGGCCGCTGAGGAGGCCGCCAAGTAC
TGCAAGGTCAACATCGCTGCCAAGGGCGACAACAAGTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000602A_C01 KCC000602A_c01
         (579 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P52877|SERC_SPIOL Phosphoserine aminotransferase, chloroplast...   185  4e-46
gb|AAM64881.1| phosphoserine aminotransferase [Arabidopsis thali...   177  7e-44
ref|NP_195288.1| phosphoserine aminotransferase [Arabidopsis tha...   176  2e-43
gb|AAM91543.1| phosphoserine aminotransferase [Arabidopsis thali...   175  5e-43
ref|NP_179354.1| phosphoserine aminotransferase -related [Arabid...   169  3e-41

>sp|P52877|SERC_SPIOL Phosphoserine aminotransferase, chloroplast precursor (PSAT)
           gi|7434195|pir||T09156 phosphoserine aminotransferase -
           spinach gi|1256204|dbj|BAA12206.1| phosphoserine
           aminotransferase [Spinacia oleracea]
          Length = 430

 Score =  185 bits (469), Expect = 4e-46
 Identities = 94/154 (61%), Positives = 114/154 (73%), Gaps = 2/154 (1%)
 Frame = +1

Query: 118 RPAVARVSTVRVQATVAMPSPTSTFAQPHGRVFNFSAGPAVLPVDVLERAQAELLNWHGS 297
           R  ++R++        A+ + T    +   RVFNF+AGPAVLP +VL++AQ+ELLNW GS
Sbjct: 38  RNPISRITCSATPTATAVSTTTKIDQRSEERVFNFAAGPAVLPENVLQKAQSELLNWRGS 97

Query: 298 GMSIMEMSHRGKEFESVIQKAEADLRTLLNIPSNYKVLFLQGGASTQFSMIPLNLAKAGE 477
           GMS+MEMSHRGKEF S+I KAEADLRTLLNIPS+Y VLFLQGGASTQFS IPLNL     
Sbjct: 98  GMSVMEMSHRGKEFTSIIDKAEADLRTLLNIPSDYTVLFLQGGASTQFSAIPLNLCTPDS 157

Query: 478 TVDYVVTGAWSKKAAEEAAKYCKVNI--AAKGDN 573
            VDY+VTG+W  KAA+EAAKY  V+   + K DN
Sbjct: 158 AVDYIVTGSWGDKAAKEAAKYAAVSSIWSGKSDN 191

>gb|AAM64881.1| phosphoserine aminotransferase [Arabidopsis thaliana]
          Length = 430

 Score =  177 bits (450), Expect = 7e-44
 Identities = 96/179 (53%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
 Frame = +1

Query: 46  KSRSEAQMALLHKTQLNAGARRASRPAVAR--VSTVRVQATVAMPSPTSTFAQPHGRVFN 219
           KS S++ + L     +N  ++  ++P   R   ST +VQ  V   S  S       RVFN
Sbjct: 23  KSSSQSFLHLSKPNTVNFASK--TKPVAVRCVASTTQVQDGVRSGSVGS-----QERVFN 75

Query: 220 FSAGPAVLPVDVLERAQAELLNWHGSGMSIMEMSHRGKEFESVIQKAEADLRTLLNIPSN 399
           F+AGPA LP +VL +AQA+L NW GSGMS+MEMSHRGKEF S+IQKAE+DLR LL IP  
Sbjct: 76  FAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLEIPQE 135

Query: 400 YKVLFLQGGASTQFSMIPLNLAKAGETVDYVVTGAWSKKAAEEAAKYCKVNIAAKGDNK 576
           Y VLFLQGGA+TQF+ +PLNL K+ +TVD+VVTG+W  KA +EA KYCK N+   G ++
Sbjct: 136 YSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSGKSE 194

>ref|NP_195288.1| phosphoserine aminotransferase [Arabidopsis thaliana]
           gi|3914996|sp|Q96255|SERC_ARATH Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           gi|7434196|pir||T04668 phosphoserine transaminase
           homolog F8D20.140 - Arabidopsis thaliana
           gi|1665831|dbj|BAA13640.1| phosphoserine
           aminotransferase [Arabidopsis thaliana]
           gi|2804260|dbj|BAA24441.1| phosphoserine
           aminotransferase [Arabidopsis thaliana]
           gi|3367581|emb|CAA20033.1| phosphoserine
           aminotransferase [Arabidopsis thaliana]
           gi|7270514|emb|CAB80279.1| phosphoserine
           aminotransferase [Arabidopsis thaliana]
          Length = 430

 Score =  176 bits (447), Expect = 2e-43
 Identities = 96/179 (53%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
 Frame = +1

Query: 46  KSRSEAQMALLHKTQLNAGARRASRPAVAR--VSTVRVQATVAMPSPTSTFAQPHGRVFN 219
           KS S++ + L     +N  ++  ++P   R   ST +VQ  V   S  S       RVFN
Sbjct: 23  KSSSQSFLHLSKPNTVNFVSK--TKPVAVRCVASTTQVQDGVRSGSVGS-----QERVFN 75

Query: 220 FSAGPAVLPVDVLERAQAELLNWHGSGMSIMEMSHRGKEFESVIQKAEADLRTLLNIPSN 399
           F+AGPA LP +VL +AQA+L NW GSGMS+MEMSHRGKEF S+IQKAE+DLR LL IP  
Sbjct: 76  FAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLEIPQE 135

Query: 400 YKVLFLQGGASTQFSMIPLNLAKAGETVDYVVTGAWSKKAAEEAAKYCKVNIAAKGDNK 576
           Y VLFLQGGA+TQF+ +PLNL K+ +TVD+VVTG+W  KA +EA KYCK N+   G ++
Sbjct: 136 YSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSGKSE 194

>gb|AAM91543.1| phosphoserine aminotransferase [Arabidopsis thaliana]
          Length = 430

 Score =  175 bits (443), Expect = 5e-43
 Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
 Frame = +1

Query: 46  KSRSEAQMALLHKTQLNAGARRASRPAVAR--VSTVRVQATVAMPSPTSTFAQPHGRVFN 219
           KS S++ + L     +N  ++  ++P   R   ST +VQ  V   S  S       RVFN
Sbjct: 23  KSSSQSFLHLSKPNTVNFVSK--TKPVAVRCVASTTQVQDGVRSGSVGS-----QERVFN 75

Query: 220 FSAGPAVLPVDVLERAQAELLNWHGSGMSIMEMSHRGKEFESVIQKAEADLRTLLNIPSN 399
           F+AGPA LP +VL +AQA+L NW GSGMS+MEMSHRGKEF S+I+KAE+DLR LL IP  
Sbjct: 76  FAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIRKAESDLRQLLEIPQE 135

Query: 400 YKVLFLQGGASTQFSMIPLNLAKAGETVDYVVTGAWSKKAAEEAAKYCKVNIAAKGDNK 576
           Y VLFLQGGA+TQF+ +PLNL K+ +TVD+VVTG+W  KA +EA KYCK N+   G ++
Sbjct: 136 YSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSGKSE 194

>ref|NP_179354.1| phosphoserine aminotransferase -related [Arabidopsis thaliana]
           gi|25287375|pir||E84554 probable phosphoserine
           aminotransferase [imported] - Arabidopsis thaliana
           gi|4926868|gb|AAD32948.1| putative phosphoserine
           aminotransferase [Arabidopsis thaliana]
          Length = 422

 Score =  169 bits (427), Expect = 3e-41
 Identities = 82/145 (56%), Positives = 105/145 (71%)
 Frame = +1

Query: 142 TVRVQATVAMPSPTSTFAQPHGRVFNFSAGPAVLPVDVLERAQAELLNWHGSGMSIMEMS 321
           T R ++     +  ST      RV NF+AGPA LP +VL +AQ++L NW GSGMS+MEMS
Sbjct: 40  TTRTKSVSIRCASASTTVGSEQRVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMS 99

Query: 322 HRGKEFESVIQKAEADLRTLLNIPSNYKVLFLQGGASTQFSMIPLNLAKAGETVDYVVTG 501
           HRGKEF S+IQKAE+DLR LL IPS Y VLFLQGGA+TQF+ +PLNL K+ ++VDY+VTG
Sbjct: 100 HRGKEFLSIIQKAESDLRQLLEIPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTG 159

Query: 502 AWSKKAAEEAAKYCKVNIAAKGDNK 576
           +W  KA +EA KYC   +   G ++
Sbjct: 160 SWGDKAFKEAKKYCNPKVIWSGKSE 184



EST assemble image


clone accession position
1 CM036c03_r AV388775 1 211
2 HC095c05_r AV639123 3 410
3 MXL043b02_r BP095520 3 381
4 HCL008e04_r AV639998 25 463
5 HCL027c03_r AV641071 25 511
6 CL46g10_r AV395669 45 581




Chlamydomonas reinhardtii
Kazusa DNA Research Institute