KCC000594A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000594A_C01 KCC000594A_c01
ctgaagGTCACCGGCGTGAATGTCTTCCCCACGACGCGCCAAATTTCGTCGAGCTCCGTG
CAGTTCCTCCAGGACCGCACCACGGTTTCGGTGGCTCAGAACTTCGAGGTCTCCTACTAC
AGCACCTTCAAGGTGGTGACCAACCTGTACACCTTCGCCAAGGAGACGTACGTGCTGTAC
CAGTGCGGCACGGCCGCCCCCAACCCCGCTGACTACGGCCTGCCTGCCGCCACCAAGGTG
CTGGCGGTGCCGCTGACGGCCGTGTCCGTGCAGGACACCACCGTGCTCAACTTCATGAAA
ATCCTCAACGTGCTGGACCGCGTGGCGTACGTCACCCCTTACGCCGTGGAGCCTTGCATG
CAGGCGCTGGCGGGCGGCAGCTGCAACCGCACCTCTGACAACGCGGTTGCCGACAAGATT
GACGGCAAGTTCGTGGGCTTCAGCGTCAAGCCCAGCGATCCCCAGGCGATCACCTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000594A_C01 KCC000594A_c01
         (477 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 51  8e-06
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc...    48  7e-05
ref|ZP_00017828.1| hypothetical protein [Chloroflexus aurantiacus]     46  2e-04
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         45  6e-04
ref|NP_862197.1| hypothetical protein [Streptomyces violaceorube...    45  6e-04

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 50.8 bits (120), Expect = 8e-06
 Identities = 55/164 (33%), Positives = 66/164 (39%), Gaps = 14/164 (8%)
 Frame = +2

Query: 26  SPRRAKFRRAPCSSSRTAPRFRWLRTSRSPTTAPSRW*PTCTP-------SPRRRTCCTS 184
           +P RA  RR P  +S T P  R   T   PT  P+R  PT +P       SP R     S
Sbjct: 57  TPPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTAS 116

Query: 185 AARPPPTPLTTACLPPPRCWRCR*RPCPCRTPPCS----TS*KSSTCWTAWRTSP-LTPW 349
            AR PP    T   P     R      P RTPP +    T  ++S   T  R SP  TP 
Sbjct: 117 PARTPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTPPRASPTRTPPRASPKRTPP 176

Query: 350 SLACRRWRAAAATAPLTTRLPTRLTASSWASASSP--AIPRRSP 475
             + RR    A+     TR P R +       +SP    PR SP
Sbjct: 177 RASPRRTPPRAS----PTRAPPRASPKRTPPTASPTRTPPRASP 216

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 52/163 (31%), Positives = 64/163 (38%), Gaps = 13/163 (7%)
 Frame = +2

Query: 26  SPRRAKFRRAPCSSSRTAPRFRWLRTSRSPTTAPSRW*PTCTP---SPRRRTCCTSAARP 196
           +P      R   ++S T P      T  SPT  P R  PT TP   SPRR     S  R 
Sbjct: 12  TPHTTSLTRILYTTSLTRPP-----TRASPTRMPPRASPTRTPPRASPRRTPPRASPRRT 66

Query: 197 PPTPLTTACLPPPRCWRCR*RPC--PCRTPPCSTS*KSSTCWTAWRTSPLTPWSLACRRW 370
           PP    T   PP R    R  P   P RTPP ++  ++    +  RT P           
Sbjct: 67  PPRASLTR--PPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTA--------- 115

Query: 371 RAAAATAPLT--TRLPTRLTASSWASASSP------AIPRRSP 475
            + A T P    TR P R +     S +SP      A PRR+P
Sbjct: 116 -SPARTPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTP 157

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +2

Query: 26  SPRRAKFRRAP--CSSSRTAPRFRWLRTS--RSPTTAPSRW*PTCTP---SPRRRTCCTS 184
           +P RA  RR P   S +RT PR    RT    SP   P R  PT  P   SP+R     S
Sbjct: 147 TPPRASPRRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTAS 206

Query: 185 AARPPPTPLTTACLPPPRCWRCR*RPCPCRTPPCSTS*KSSTCWTAWRTSP 337
             R PP    T   P     R   R  P RTPP  +  ++ +  +  RT P
Sbjct: 207 PTRTPPRASPTRTPPTESPARTPPRASPTRTPPTESPARTPSRASTRRTPP 257

 Score = 38.5 bits (88), Expect = 0.040
 Identities = 45/137 (32%), Positives = 53/137 (37%), Gaps = 20/137 (14%)
 Frame = +2

Query: 23  SSPRRAKFRRAP------CSSSRTAPRFRWLRTS--RSPTTAPSRW*PTCTP-------- 154
           +SPRR   R +P       S  RT PR    RT    SPT AP R  P  TP        
Sbjct: 151 ASPRRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTASPTRT 210

Query: 155 ----SPRRRTCCTSAARPPPTPLTTACLPPPRCWRCR*RPCPCRTPPCSTS*KSSTCWTA 322
               SP R     S AR PP    T   P     R   R    RTPP ++  ++    + 
Sbjct: 211 PPRASPTRTPPTESPARTPPRASPTRTPPTESPARTPSRASTRRTPPRASPTRTPPRASP 270

Query: 323 WRTSPLTPWSLACRRWR 373
            RT P T    +C R R
Sbjct: 271 KRTPP-TASPTSCIRHR 286

>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680] gi|29605870|dbj|BAC69934.1| putative
           protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680]
          Length = 474

 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 51/190 (26%), Positives = 71/190 (36%), Gaps = 34/190 (17%)
 Frame = +2

Query: 8   SPA*MSSPRRAKFRRAPCSSSRTAPRFRWLRTSRSPTTAPSRW*PTCT-------PSPRR 166
           +P   SSP   +   + C+     PR  W  +S    T P RW P+ T       P    
Sbjct: 276 TPTPWSSPCPPRPPPSCCAPRHPPPRPSWPASS----TRPWRWSPSPTAAVGPASPKAAA 331

Query: 167 RTCCTSAARP------PPTPLTTACLPPPRCWRCR*RP-------CPCRTPPCSTS*KSS 307
            +C  S   P      PP     +    P CW C  R            T P S + +++
Sbjct: 332 SSCLPSTGAPSRHRRSPPRSGAGSRTRTPTCWCCARRSGGTARRRSSAGTTPASWTSRAT 391

Query: 308 TC-----WTAWRTSPLTPW---------SLACRRWRAAAATAPLTTRLPTRLTASSWASA 445
           TC     W   R+   +P          S   R W A+A T+P     P+    ++ ASA
Sbjct: 392 TCARRPAWPPRRSPAASPAGPTACRSTPSATTRAWPASATTSPSCPASPSAARRTT-ASA 450

Query: 446 SSPAIPRRSP 475
           S PA P R+P
Sbjct: 451 SRPASPARTP 460

 Score = 38.5 bits (88), Expect = 0.040
 Identities = 27/91 (29%), Positives = 37/91 (39%)
 Frame = +2

Query: 203 TPLTTACLPPPRCWRCR*RPCPCRTPPCSTS*KSSTCWTAWRTSPLTPWSLACRRWRAAA 382
           +P    C P P  W     PCP R PP   + +      +W  S   PW     RW + +
Sbjct: 269 SPAVVCCTPTP--WSS---PCPPRPPPSCCAPRHPPPRPSWPASSTRPW-----RW-SPS 317

Query: 383 ATAPLTTRLPTRLTASSWASASSPAIPRRSP 475
            TA +    P    +S   S  +P+  RRSP
Sbjct: 318 PTAAVGPASPKAAASSCLPSTGAPSRHRRSP 348

>ref|ZP_00017828.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 435

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
 Frame = +1

Query: 58  VQFLQDRTTVSVAQNFEVSYYSTFKVVTNLYTFAKET----YVLYQCGTAAPNPADYGLP 225
           + +  ++ T+S A  + + Y++ +KV+T L  +        Y+L QCGT  P  +D  L 
Sbjct: 82  IDYFPEKVTLSDATGWTIEYFNHYKVITVLNPWRNADTQFQYILVQCGTPPPPASDNAL- 140

Query: 226 AATKVLAVPLTAVSVQDTTVLNFMKILNVLDRVAYVTPY 342
               ++ +P+  V    TT L  +  L VLD++  V  +
Sbjct: 141 ----IIEIPVQRVIAMSTTQLPHLDGLGVLDKLIGVDSF 175

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 54/176 (30%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
 Frame = +2

Query: 23  SSPRRAKFRRAP------CSSSRTAPRFRWLRT--SRSPTTAPSRW*PTCTP-------- 154
           +SPRRA  R +P       S +RT P     RT  + SP   PSR  P  TP        
Sbjct: 70  ASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRASPRRTPPRASPTRT 129

Query: 155 ----SPRRRTCCTSAARPPPTPLTTACLPPPRCWRCR*RPCPCRTPPCSTS*KSSTCWTA 322
               SPRR     S  R PP    T   P     R   R  P RTPP ++  ++    + 
Sbjct: 130 PPRASPRRTPPRASPRRTPPRASPTRAPPRASPKRTPPRASPTRTPPRASPTRTPPTESP 189

Query: 323 WRTSPL-----TPWSLACRRWRAAAATAPLTTRLPTRLTASSWASASSPAIPRRSP 475
            RT P      TP   + RR    A+     TR P R + +     +S   P+R+P
Sbjct: 190 ARTPPTASPARTPSRASPRRMPPRAS----PTRTPPRASPTRTPPRAS---PKRTP 238

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 57/163 (34%), Positives = 64/163 (38%), Gaps = 7/163 (4%)
 Frame = +2

Query: 8   SPA*MSSPRRAKFRRAP--CSSSRTAPRFRWLRTS--RSPTTAPSRW*PTCTPSPRRRTC 175
           SPA   +P RA   R P   S  RT PR    RT    SP  AP R       SPRR   
Sbjct: 35  SPA--RTPPRASPARTPPRASPGRTPPRASPRRTPPRASPRRAPPR------ASPRRTPP 86

Query: 176 CTSAARPPPTPLTTACLPPPRCWRCR*RPCPCRTPPCSTS*KSSTCWTAWRTSP-LTPWS 352
             S  R PPT       P     R   R  P RTPP     ++S   T  R SP  TP  
Sbjct: 87  TASPTRTPPTESPARTPPTASPARTPSRASPRRTPP-----RASPTRTPPRASPRRTPPR 141

Query: 353 LACRRWRAAAATAPLTTRLPTRLTASSWASASSP--AIPRRSP 475
            + RR    A+     TR P R +       +SP    PR SP
Sbjct: 142 ASPRRTPPRAS----PTRAPPRASPKRTPPRASPTRTPPRASP 180

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 34/91 (37%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
 Frame = +2

Query: 26  SPRRAKFRRAP--CSSSRTAPRFRWLRTSRSPTTAPSRW*PTCTPSPRRRTCCTSAARPP 199
           +P RA  +R P   S +RT PR    RT   PT +P+R  PT   SP R     S  R P
Sbjct: 156 APPRASPKRTPPRASPTRTPPRASPTRTP--PTESPARTPPTA--SPARTPSRASPRRMP 211

Query: 200 PTPLTTACLPPPRCWRCR*RPCPCRTPPCST 292
           P    T   P     R   R  P RTPP ++
Sbjct: 212 PRASPTRTPPRASPTRTPPRASPKRTPPTAS 242

 Score = 38.9 bits (89), Expect = 0.031
 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
 Frame = +2

Query: 101 TSRSPTTAPSRW*PTCTPSPRRRTCCTSAARPPPTPLTTACLPPPRCWRCR*RPCPCRTP 280
           T   PT +P+R  P  T SP R     S AR PP        P     R   R  P RTP
Sbjct: 10  TRTPPTASPARTPP--TESPARTPPTASPARTPPRASPARTPPRASPGRTPPRASPRRTP 67

Query: 281 PCSTS*KSSTCWTAWRTSPL-----TPWSLACRRWRAAAATAPLTTRLPTRLTASSWASA 445
           P ++  ++    +  RT P      TP + +  R    A+ A   +R   R T    +  
Sbjct: 68  PRASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRASPRRTPPRASPT 127

Query: 446 SSP--AIPRRSP 475
            +P  A PRR+P
Sbjct: 128 RTPPRASPRRTP 139

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 46/129 (35%), Positives = 56/129 (42%), Gaps = 6/129 (4%)
 Frame = +2

Query: 107 RSP-TTAPSRW*PTCTPSPRRRTCCTSAARPPPTPLTTACLPPPRCWRCR*RP--CPCRT 277
           R+P TT+ +R  PT   SP R     S AR PPT   +    PPR    R  P   P RT
Sbjct: 2   RTPYTTSLTRTPPTA--SPARTPPTESPARTPPT--ASPARTPPRASPARTPPRASPGRT 57

Query: 278 PPCSTS*KSSTCWTAWRTSP--LTPWSLACRRWRAAAATAPLTTRLPTRL-TASSWASAS 448
           PP     ++S   T  R SP    P +   R    A+ T    T  P R    +S A   
Sbjct: 58  PP-----RASPRRTPPRASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTP 112

Query: 449 SPAIPRRSP 475
           S A PRR+P
Sbjct: 113 SRASPRRTP 121

 Score = 34.3 bits (77), Expect = 0.76
 Identities = 28/72 (38%), Positives = 32/72 (43%), Gaps = 6/72 (8%)
 Frame = +2

Query: 29  PRRAKFRRAPCSS-SRTAPRFRWLRTSR--SPTTAPSRW*PTCTP---SPRRRTCCTSAA 190
           PR +  R  P  S +RT P     RT    SP   P R  PT TP   SP R     S  
Sbjct: 176 PRASPTRTPPTESPARTPPTASPARTPSRASPRRMPPRASPTRTPPRASPTRTPPRASPK 235

Query: 191 RPPPTPLTTACL 226
           R PPT   T+C+
Sbjct: 236 RTPPTASPTSCI 247

>ref|NP_862197.1| hypothetical protein [Streptomyces violaceoruber]
           gi|28797341|gb|AAO50188.1| hypothetical protein
           [Streptomyces violaceoruber]
          Length = 172

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 44/134 (32%), Positives = 58/134 (42%), Gaps = 4/134 (2%)
 Frame = +2

Query: 62  SSSRTAPRFRWLRTSRSPTTAPSRW*PTCTPSPRRRTCCTSAARP--PPTPLTTACLPPP 235
           SS R A   RW R S +P T PS       P+   R+  T+ +R   P T  TTA  PP 
Sbjct: 2   SSRRCASWARWSRPSPAPATKPSGTNSPGEPAGTSRSTSTAGSRTPWPCTSGTTAIRPP- 60

Query: 236 RCWRCR*RPC--PCRTPPCSTS*KSSTCWTAWRTSPLTPWSLACRRWRAAAATAPLTTRL 409
                R +P   PCR+   S++ + S    AW  +P      A   WR+   + P   + 
Sbjct: 61  ----ARKQPAFSPCRS---SSTLRCSPHSPAWSPAP------ASTSWRSRPGSPPPNPKP 107

Query: 410 PTRLTASSWASASS 451
           P R   SS A A S
Sbjct: 108 PARSPRSSPAPARS 121



EST assemble image


clone accession position
1 MXL096e09_r BP098630 1 452
2 CL45h06_r AV397779 7 477
3 MXL097f06_r BP098701 22 345




Chlamydomonas reinhardtii
Kazusa DNA Research Institute