KCC000588A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000588A_C01 KCC000588A_c01
ttagcaggttgtCTGAACACTTGGTAAACTTGTTCGGGGCGCAGCCCGACCTTACGCGGC
CCTCTGCTGCTTGCACTAAGAATGACGCACACGCTCATTGGCTGGGCGGCCATCTTGGCG
CTCGGCATGATGCTCATCAACGATTTTGCAATTCTGGGCTCGCAAGGCCGCCTGGGCCTC
GGAGGTGGCGCCATGCAAGCGAGCGGCGAGCCGAAATCGCTTTTCGAGGTTTTCGCCGAG
CGTGTGGCCCCCCACGGCTACGGTGTCCAGGAGCACTTTGCCACCACGGGGGACGGATAC
ATCCTGCGCCTGTTCCGCGTGTGCGCGGGCGGCAGCTGTGATGACTACCACAACAACACC
AACACCTTCGGCGGCAGTAGCGGCGACAGCAGTAGCAGTAGCGATGGTGCCGACACCGCC
GCTCCCGGGCCCTCCTGTTCGTCTACCTCGGCGTCATCTCACTCGCTGCGCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000588A_C01 KCC000588A_c01
         (473 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_608776.1| CG2772-PA [Drosophila melanogaster] gi|7295808|...    44  0.001
gb|AAC84007.1| serum amyloid A-activating factor SAF-1 [Oryctola...    43  0.002
gb|AAO50894.1| similar to triglyceride lipase-cholesterol estera...    42  0.004
ref|NP_695231.1| angiomotin [Mus musculus] gi|18479137|gb|AAL734...    42  0.005
dbj|BAC98087.1| mKIAA1071 protein [Mus musculus]                       42  0.005

>ref|NP_608776.1| CG2772-PA [Drosophila melanogaster] gi|7295808|gb|AAF51110.1|
           CG2772-PA [Drosophila melanogaster]
           gi|21429164|gb|AAM50301.1| RE45077p [Drosophila
           melanogaster]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 22/63 (34%), Positives = 32/63 (49%)
 Frame = +1

Query: 211 PKSLFEVFAERVAPHGYGVQEHFATTGDGYILRLFRVCAGGSCDDYHNNTNTFGGSSGDS 390
           P    +  AER+A HGY  + HF  T DGY+L +FR+         H+      G+ G+S
Sbjct: 28  PFKRLKTSAERIAEHGYPAESHFVETPDGYVLNVFRI--------PHSPKLNSNGNEGES 79

Query: 391 SSS 399
            +S
Sbjct: 80  EAS 82

>gb|AAC84007.1| serum amyloid A-activating factor SAF-1 [Oryctolagus cuniculus]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +2

Query: 296 DTSCACSACARAAAVMTTTTTPTPSAAVAATAVAVAMVPTPPLPGPPVRLP 448
           +++ A +A A AAA    T  P P+AA      A+   P PP P PPV  P
Sbjct: 93  ESAAAAAAAAAAAAAAVVTAPPAPAAASTVDTAALKQPPAPPPPPPPVSAP 143

>gb|AAO50894.1| similar to triglyceride lipase-cholesterol esterase.
           [Schizosaccharomyces pombe] [Dictyostelium discoideum]
          Length = 602

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 26/91 (28%), Positives = 45/91 (48%)
 Frame = +1

Query: 199 ASGEPKSLFEVFAERVAPHGYGVQEHFATTGDGYILRLFRVCAGGSCDDYHNNTNTFGGS 378
           A+   K L     E +   GY V+EHF TT DG+IL L R+      +   ++  T   S
Sbjct: 61  ATEAEKDLERDAIEMITARGYPVEEHFVTTPDGFILGLHRITGPKQFNTPPDSPPTSPRS 120

Query: 379 SGDSSSSSDGADTAAPGPSCSSTSASSHSLR 471
           + +++ +   +   + G S SST+ ++ + R
Sbjct: 121 NNNNNHNHSRSSNNSNGTSSSSTTTTTTTNR 151

>ref|NP_695231.1| angiomotin [Mus musculus] gi|18479137|gb|AAL73436.1|AF461135_1
           angiomotin [Mus musculus]
          Length = 891

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 34/102 (33%), Positives = 47/102 (45%), Gaps = 10/102 (9%)
 Frame = +2

Query: 158 ARKAAWASEVAPCKRAASRNRFSRFSP----SVWPPTATVSRST---LPPRGTDTSCACS 316
           A  AA A+ V+     ++ N  S  +P    +V PP A VS +    +P   + T    S
Sbjct: 690 AAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAAAVQIPAAASLTPATVS 749

Query: 317 ---ACARAAAVMTTTTTPTPSAAVAATAVAVAMVPTPPLPGP 433
              A A AA    TT   T +AA A TA+ VA   + P+P P
Sbjct: 750 PTAATATAAVAAATTAAITAAAAAATTAIQVAPATSAPVPSP 791

>dbj|BAC98087.1| mKIAA1071 protein [Mus musculus]
          Length = 539

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 34/102 (33%), Positives = 47/102 (45%), Gaps = 10/102 (9%)
 Frame = +2

Query: 158 ARKAAWASEVAPCKRAASRNRFSRFSP----SVWPPTATVSRST---LPPRGTDTSCACS 316
           A  AA A+ V+     ++ N  S  +P    +V PP A VS +    +P   + T    S
Sbjct: 338 AAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAAAVQIPAAASLTPATVS 397

Query: 317 ---ACARAAAVMTTTTTPTPSAAVAATAVAVAMVPTPPLPGP 433
              A A AA    TT   T +AA A TA+ VA   + P+P P
Sbjct: 398 PTAATATAAVAAATTAAITAAAAAATTAIQVAPATSAPVPSP 439



EST assemble image


clone accession position
1 HCL007g08_r AV639950 1 373
2 HCL054d03_r AV642593 13 392
3 HCL048d04_r AV642253 13 205
4 CL45c05_r AV397785 18 327
5 HCL034f07_r AV641492 25 474




Chlamydomonas reinhardtii
Kazusa DNA Research Institute