KCC000584A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000584A_C01 KCC000584A_c01
GGCAACTTGACACTTGAGCTACTCGAAGGCAGGGCCGTGTGCAGAGCTCCTTCCCCACTA
TCCTTCCTTTGCGTACCATACTTATCTTGCTAACAGCCTATAGAAGATGAGCTACGGGGG
CACGGAGGAGGATGACCTTTATGGAGGATATGATGAGCAATCGAACCCGCTTGCGGGCTC
GGGTGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGCCATGAT
GGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGGCTATGCGGGGCGGCAC
GGCGATGCAGCAGGACCCCAGCCTGGCGCGGCCTATGACCTCGAACCGGGGTGCTGGCTT
CACGTCGGCGCCTAACAAGAAGTTTGACCCCCTCAATCGCTCAATGGGGTCGACACTGGG
CTCGTCGGGGGGTGGCGCAATGCTGGTGGCTCGCAAGGGTGACACCAGCCCGGAGGAGCA
GGCGCGCGGGATGGAGAAGACGGTGCATGAGCTGCTTGAGAAGAGCGCGGCGGACGCGGC
TAAGAATGACATCAACTCGGCCCTGGAGAACGCCATGGAGGCGAAGAAGAATGAGCGAAA
GCTGTGCCGCTTCCGGGAACAGAACAACATGGCGGACCAGATCAACCTGGAGCTGATGTA
CGCCGTGGACTTCAACCTGGCACACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000584A_C01 KCC000584A_c01
         (686 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG37228.1|AF298884_1 intraflagellar transport particle prote...   389  e-107
ref|NP_006522.2| Tg737 protein isoform 2 [Homo sapiens]                95  1e-18
gb|AAH12250.1| Tg737 protein [Mus musculus]                            95  1e-18
ref|NP_783195.2| Tg737 protein isoform 1 [Homo sapiens]                95  1e-18
gb|AAH30776.2| Tg737 protein, isoform 1 [Homo sapiens]                 95  1e-18

>gb|AAG37228.1|AF298884_1 intraflagellar transport particle protein IFT88 [Chlamydomonas
           reinhardtii]
          Length = 782

 Score =  389 bits (998), Expect = e-107
 Identities = 193/193 (100%), Positives = 193/193 (100%)
 Frame = +2

Query: 107 MSYGGTEEDDLYGGYDEQSNPLAGSGGAAFKALGADGAPPGTAMMGPPGTAMKSFVPGTA 286
           MSYGGTEEDDLYGGYDEQSNPLAGSGGAAFKALGADGAPPGTAMMGPPGTAMKSFVPGTA
Sbjct: 1   MSYGGTEEDDLYGGYDEQSNPLAGSGGAAFKALGADGAPPGTAMMGPPGTAMKSFVPGTA 60

Query: 287 MRGGTAMQQDPSLARPMTSNRGAGFTSAPNKKFDPLNRSMGSTLGSSGGGAMLVARKGDT 466
           MRGGTAMQQDPSLARPMTSNRGAGFTSAPNKKFDPLNRSMGSTLGSSGGGAMLVARKGDT
Sbjct: 61  MRGGTAMQQDPSLARPMTSNRGAGFTSAPNKKFDPLNRSMGSTLGSSGGGAMLVARKGDT 120

Query: 467 SPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCRFREQNNMADQIN 646
           SPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCRFREQNNMADQIN
Sbjct: 121 SPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCRFREQNNMADQIN 180

Query: 647 LELMYAVDFNLAH 685
           LELMYAVDFNLAH
Sbjct: 181 LELMYAVDFNLAH 193

>ref|NP_006522.2| Tg737 protein isoform 2 [Homo sapiens]
          Length = 824

 Score = 94.7 bits (234), Expect = 1e-18
 Identities = 77/204 (37%), Positives = 105/204 (50%), Gaps = 17/204 (8%)
 Frame = +2

Query: 122 TEEDDLYGGYDEQSNPLAG----SGGAAFKALGADG---APPGTAMMGPP--------GT 256
           T+EDDLY GY++  NP+         AAF+          PP TA +           G 
Sbjct: 11  TDEDDLYSGYNDY-NPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGY 69

Query: 257 AMKSFVPGTAMRGGTAMQQDPSLARPMTSNRGAGFTSAP--NKKFDPLNRSMGSTLGSSG 430
             K+ +  +  R  T   QD  + RPMT+ R AGFT A      FDPL++S G       
Sbjct: 70  GSKTSLASSIGRPMTGAIQD-GVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPA----- 123

Query: 431 GGAMLVARKGDTSPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCR 610
             + L A+K D SPEE+ + +EK V+EL+E+S    +  D+  ALE A +A + ER L R
Sbjct: 124 --SPLEAKKKD-SPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR 180

Query: 611 FREQNNMADQINLELMYAVDFNLA 682
            REQ    + INL+L Y+V FNLA
Sbjct: 181 QREQVTTPENINLDLTYSVLFNLA 204

>gb|AAH12250.1| Tg737 protein [Mus musculus]
          Length = 824

 Score = 94.7 bits (234), Expect = 1e-18
 Identities = 75/203 (36%), Positives = 100/203 (48%), Gaps = 16/203 (7%)
 Frame = +2

Query: 122 TEEDDLYGGYDE-----QSNPLAGSGGAAFKALGADGAPP-------GTAMMGPPGTAMK 265
           T+EDDLY G+++      +  L    G       + G  P        TA+  P  T   
Sbjct: 10  TDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPTATGYG 69

Query: 266 SFVPGTAMRGG--TAMQQDPSLARPMTSNRGAGFTSAP--NKKFDPLNRSMGSTLGSSGG 433
           S    T+  G   T   QD  +ARPMT+ R AGF+ A      FDPL        G S G
Sbjct: 70  SKTSLTSSMGRPMTGTIQD-GVARPMTAVRAAGFSKAALRGSAFDPL--------GQSRG 120

Query: 434 GAMLVARKGDTSPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCRF 613
            A  +  K + SPEE+ R +EK V+EL+E+S    +  D+  ALE A +A + ER L R 
Sbjct: 121 PAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQ 180

Query: 614 REQNNMADQINLELMYAVDFNLA 682
           REQ    + INL+L Y+V FNLA
Sbjct: 181 REQVTSPENINLDLTYSVLFNLA 203

>ref|NP_783195.2| Tg737 protein isoform 1 [Homo sapiens]
          Length = 833

 Score = 94.7 bits (234), Expect = 1e-18
 Identities = 77/204 (37%), Positives = 105/204 (50%), Gaps = 17/204 (8%)
 Frame = +2

Query: 122 TEEDDLYGGYDEQSNPLAG----SGGAAFKALGADG---APPGTAMMGPP--------GT 256
           T+EDDLY GY++  NP+         AAF+          PP TA +           G 
Sbjct: 20  TDEDDLYSGYNDY-NPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGY 78

Query: 257 AMKSFVPGTAMRGGTAMQQDPSLARPMTSNRGAGFTSAP--NKKFDPLNRSMGSTLGSSG 430
             K+ +  +  R  T   QD  + RPMT+ R AGFT A      FDPL++S G       
Sbjct: 79  GSKTSLASSIGRPMTGAIQD-GVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPA----- 132

Query: 431 GGAMLVARKGDTSPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCR 610
             + L A+K D SPEE+ + +EK V+EL+E+S    +  D+  ALE A +A + ER L R
Sbjct: 133 --SPLEAKKKD-SPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR 189

Query: 611 FREQNNMADQINLELMYAVDFNLA 682
            REQ    + INL+L Y+V FNLA
Sbjct: 190 QREQVTTPENINLDLTYSVLFNLA 213

>gb|AAH30776.2| Tg737 protein, isoform 1 [Homo sapiens]
          Length = 833

 Score = 94.7 bits (234), Expect = 1e-18
 Identities = 77/204 (37%), Positives = 105/204 (50%), Gaps = 17/204 (8%)
 Frame = +2

Query: 122 TEEDDLYGGYDEQSNPLAG----SGGAAFKALGADG---APPGTAMMGPP--------GT 256
           T+EDDLY GY++  NP+         AAF+          PP TA +           G 
Sbjct: 20  TDEDDLYSGYNDY-NPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGY 78

Query: 257 AMKSFVPGTAMRGGTAMQQDPSLARPMTSNRGAGFTSAP--NKKFDPLNRSMGSTLGSSG 430
             K+ +  +  R  T   QD  + RPMT+ R AGFT A      FDPL++S G       
Sbjct: 79  GSKTSLASSIGRPMTGAIQD-GVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPA----- 132

Query: 431 GGAMLVARKGDTSPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCR 610
             + L A+K D SPEE+ + +EK V+EL+E+S    +  D+  ALE A +A + ER L R
Sbjct: 133 --SPLEAKKKD-SPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR 189

Query: 611 FREQNNMADQINLELMYAVDFNLA 682
            REQ    + INL+L Y+V FNLA
Sbjct: 190 QREQVTTPENINLDLTYSVLFNLA 213



EST assemble image


clone accession position
1 MXL090c04_r BP098255 1 460
2 LCL100b09_r AV631809 64 602
3 HCL089b11_r AV644477 67 602
4 LCL001b06_r AV626019 79 568
5 MXL008e02_r BP093442 80 529
6 MXL010f09_r BP093595 82 361
7 MXL100b06_r BP098850 82 436
8 LCL043c08_r AV628526 100 602
9 CL44f03_r AV395576 105 516
10 MXL092b09_r BP098359 106 541
11 LCL045a10_r AV628646 109 527
12 MXL001e11_r BP092970 317 792




Chlamydomonas reinhardtii
Kazusa DNA Research Institute