KCC000581A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000581A_C01 KCC000581A_c01
GTAGCTTGAGCCCTACCATAGTCGCGATACTTTCTAGGAGTCTTACTACAGCTCGAGCAA
CAGTCGCGAACCGCAACACGCACTCGCGTGCCCTTTCTAGCCCCTCCGCCAACATGCTGC
GCGCTCCTGTCATGTCTTCGGGCCGCTTCCCGCAAGGTTGCCGCTCCCGCGGTGGCCGCG
CGGGCAGGTTGCCGCCGCGTCGGTGTCATGCGCGTCTTCGCATTCCAGAAGGCCGGCCAG
CTGCGACAACTTGCACGACAAGAATGCCCTGCATGAGCGCATCCAAAAAAGCAAGGAGCT
GCTGGACGCCGAGAGCGCCATGATGTGCTACCAGTGCGAGCAGACCAAGAGCGGCACCGG
CTGCACCGACATCGGGGTGTGCGGCAAGACGCCCGAGGTGTCGGCGCTGCAGGACCTGCT
CATCTACTCGGTCAAGGGCCTGGGCAGCCTGGCGCACGTGGCCCGCACCTCGCCCGCCAA
GATCGAGGACGCCGCCGTCAACACCTTCATCAACGGCGCCATCTTCTCCACCCTCACCAA
CGTCAACTTCGCAGATGACCGCTTCCTGGAGTTTGTGACCGACTGCCGCAAGCTTCACGC
GCAGCTGGCAGCCAAGATGGCCGCGGCGGGCGTGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000581A_C01 KCC000581A_c01
         (635 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster prot...    92  8e-18
pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio De...    92  8e-18
pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio De...    92  8e-18
ref|ZP_00129319.1| COG1151: 6Fe-6S prismane cluster-containing p...    91  2e-17
ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp...    91  2e-17

>sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster protein) (Prismane protein)
           (HCP) gi|97362|pir||S24389 hybrid cluster [4Fe-2S-3O]
           protein [validated] - Desulfovibrio desulfuricans
           gi|49286|emb|CAA78029.1| prismane protein [Desulfovibrio
           desulfuricans]
          Length = 545

 Score = 91.7 bits (226), Expect = 8e-18
 Identities = 46/102 (45%), Positives = 61/102 (59%)
 Frame = +2

Query: 314 SAMMCYQCEQTKSGTGCTDIGVCGKTPEVSALQDLLIYSVKGLGSLAHVARTSPAKIEDA 493
           +AM CYQC++T    GCT +GVCGK PE +ALQD LIY  KGLG +A   R +  K  D 
Sbjct: 3   NAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLR-AEGKAVDH 61

Query: 494 AVNTFINGAIFSTLTNVNFADDRFLEFVTDCRKLHAQLAAKM 619
            ++  + G +F+T+TN NF DD   E V        +LAA +
Sbjct: 62  RIDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAASL 103

>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
           X-Ray Structure At 1.25a Resolution Using Synchrotron
           Radiation At A Wavelength Of 0.933a
           gi|20663616|pdb|1GNL|B Chain B, Hybrid Cluster Protein
           From Desulfovibrio Desulfuricans X-Ray Structure At
           1.25a Resolution Using Synchrotron Radiation At A
           Wavelength Of 0.933a gi|30749855|pdb|1OA0|A Chain A,
           Reduced Hybrid Cluster Protein From Desulfovibrio
           Desulfuricans X-Ray Structure At 1.25a Resolution
           gi|30749856|pdb|1OA0|B Chain B, Reduced Hybrid Cluster
           Protein From Desulfovibrio Desulfuricans X-Ray Structure
           At 1.25a Resolution
          Length = 544

 Score = 91.7 bits (226), Expect = 8e-18
 Identities = 46/102 (45%), Positives = 61/102 (59%)
 Frame = +2

Query: 314 SAMMCYQCEQTKSGTGCTDIGVCGKTPEVSALQDLLIYSVKGLGSLAHVARTSPAKIEDA 493
           +AM CYQC++T    GCT +GVCGK PE +ALQD LIY  KGLG +A   R +  K  D 
Sbjct: 2   NAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLR-AEGKAVDH 60

Query: 494 AVNTFINGAIFSTLTNVNFADDRFLEFVTDCRKLHAQLAAKM 619
            ++  + G +F+T+TN NF DD   E V        +LAA +
Sbjct: 61  RIDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAASL 102

>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
           Atcc 27774 X-Ray Structure At 2.6a Resolution Using
           Synchrotron Radiation At A Wavelength Of 1.722a
           gi|20663612|pdb|1GN9|B Chain B, Hybrid Cluster Protein
           From Desulfovibrio Desulfuricans Atcc 27774 X-Ray
           Structure At 2.6a Resolution Using Synchrotron Radiation
           At A Wavelength Of 1.722a
          Length = 544

 Score = 91.7 bits (226), Expect = 8e-18
 Identities = 46/102 (45%), Positives = 61/102 (59%)
 Frame = +2

Query: 314 SAMMCYQCEQTKSGTGCTDIGVCGKTPEVSALQDLLIYSVKGLGSLAHVARTSPAKIEDA 493
           +AM CYQC++T    GCT +GVCGK PE +ALQD LIY  KGLG +A   R +  K  D 
Sbjct: 2   NAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLR-AEGKAVDH 60

Query: 494 AVNTFINGAIFSTLTNVNFADDRFLEFVTDCRKLHAQLAAKM 619
            ++  + G +F+T+TN NF DD   E V        +LAA +
Sbjct: 61  RIDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAASL 102

>ref|ZP_00129319.1| COG1151: 6Fe-6S prismane cluster-containing protein [Desulfovibrio
           desulfuricans G20]
          Length = 575

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 50/115 (43%), Positives = 68/115 (58%), Gaps = 1/115 (0%)
 Frame = +2

Query: 275 ERIQKSKELLDAESAMMCYQCEQTKSGTGCTDIGVCGKTPEVSALQDLLIYSVKGLGSLA 454
           +RI    E    E +M C QCEQT  GTGCT +GVCGK PEVS LQD  +Y+++G   LA
Sbjct: 24  DRIPVYFETKPKEYSMFCNQCEQTAKGTGCTAMGVCGKQPEVSDLQDATVYALRG---LA 80

Query: 455 HVARTSPAK-IEDAAVNTFINGAIFSTLTNVNFADDRFLEFVTDCRKLHAQLAAK 616
             A+ + AK + +  +  +    +FSTLTNVNF  DRF+ +V +   +   L  K
Sbjct: 81  IAAQDAAAKGVREQGMGHYTAARLFSTLTNVNFDPDRFVPWVHEITAMRDDLVRK 135

>ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586] gi|23821957|sp|Q8RFL1|HCP_FUSNN Hydroxylamine
           reductase (Hybrid-cluster protein) (HCP)
           gi|19714209|gb|AAL94880.1| Prismane protein
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 566

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
 Frame = +2

Query: 320 MMCYQCEQTKSGTGCTDIGVCGKTPEVSALQDLLIYSVKGLGSLAHVARTS--PAKIEDA 493
           M CYQC++T  GTGCT IGVCGKT E S LQDLL+Y+ KG+ + + V R +    ++ + 
Sbjct: 4   MFCYQCQETAKGTGCTSIGVCGKTSETSGLQDLLLYTEKGVAAYSTVFRKNGKAKELLEG 63

Query: 494 AVNTFINGAIFSTLTNVNFADDRFLEFVTDCRKLHAQLAA 613
            VN ++  ++F T+TN NF D+  L+ +    KL  +L A
Sbjct: 64  KVNRYLINSLFITITNANFDDNAILDEIKAGLKLREELKA 103



EST assemble image


clone accession position
1 MXL088e10_r BP098165 1 543
2 HCL020d06_r AV640675 -3 205
3 HCL073a06_r AV643626 -3 486
4 MXL088e10_r BP098165 1 543
5 CL44d11_r AV395597 1 473
6 HCL007g02_r AV639945 1 408
7 HCL037a07_r AV641594 1 525
8 CL55c02_r AV396049 2 574
9 MXL035b04_r BP095057 4 402
10 HCL092c05_r AV644686 20 447
11 HC023h03_r AV633676 20 546
12 HCL055e08_r AV642658 30 556
13 MXL074d02_r BP097353 53 454
14 CL69f09_r AV396799 70 624
15 MXL084d07_r BP097969 289 654




Chlamydomonas reinhardtii
Kazusa DNA Research Institute