KCC000577A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000577A_C01 KCC000577A_c01
taGAAGCACAATTTACGTCAACGGCTTGCGAATACACACCGACGACCCACGGAGGACCCA
ACGTCAACGACTTCTCGCAGGCCCTCTGGAGGCCCGCTTGCCTACGTAACGGCTGCTGAA
GCAGCAACTTAGATAAGGAAGCGCCCACCAGCGCAGCGACCTGCTGACCACGCAATCTTG
CATCAGTCCCATCTCATCAGGCCCTTTCTCAACCGGCTCCAGCGCCAGCTTCTGCCTACT
TTTTAGCCCAGGAAAGGGTTAGGTCGTCAATTGACTTGAACAGCAAGTCTCTTGACTCCA
TCCCGACCCGCTCAAGGGCACACTTACACGTTTTAGGGGACCATGCGTGCTTCGCTTCAG
ATTCCGGCCGCAAGGCCGCGTGTGGCAGCTGTGCGTCCTGCTGCTCGGAAGCTGCTTTCT
CCCGGCGTTGTGCGGGTGCCTGTGGCGACCGTGTTCTGCGCTGCGGGTGGAGTCGCCGAC
CGTTCCAACGAGGAGGCCCACAAGGGCGACTTCCTGGGCTCCTTCGATGCTGGAATGCGC
GTTCCGAACATCGTTGCTGCCAAGGGTGGTGGTGGTGGCGGAAACATGGGCTCCAGCGGT
AGCCTCGGCGCGGTCATGGAGCGCAGCAGGCTGGAGTTCGTCATGCCCACGCCTCCGGCC
CAGGCTCCCAAGCTGGACGATGGTGGCGATGGCGGTGATATTGGCAAGCACAACCACAAC
GGCGGTGGCGGTGGCGACGACGGTGGCGACGATGACGATTACTTCAACGAGGACGGGGAC
GGCGATGGCGAGGGTGGCGAGGGCGAGGGCGGCAACTCCTTCTTCCGTACCGTGATTCCG
GAGTCGTATGACAAGCTTTCCATCGGCGCGGTGTTCTCGGAGTGGATGCGAACCGTCGCG
GAGCTGCCCCTCATAATCCGTCGTGCAGTGGAGATGGGCCTGTTCAGCTCTGCGCAGCTG
GTCCGCTTCTTCTCGATGGACGTGCGGCCGAACATCACCCGCACGGTTTCGCGCAACCTG
CCCCCAGCTTGGGCCCGCGACTTCGTTGGCCGCCTAATGGCCGACCCGGCGTTCGTGCAG
AAGATGGTCATCGAGAGCGCCATCTCCGCCGTGGCCTCGCTCTACTACGAGTACCGCGCC
CGCGGCGACCGCTTCAAGGACGAGCTCGATCTGGTGCTGATCAACACAATCGGCATGGCT
GCCGCCACCAGCGCCACCGTGTGGATGGTGGCGCCCACCCGCTGCTACGGAACCGTGCAC
AAGTTCCCCTGGCAGCAGATGCTGGACAGCCTACCCAACTGCGTGTGTCGACGCCAACGG
CCCGTTGCGCGCTTACACGCCCCAGAGCCGCATCGCCGCCTTCTTCAGGCACGGCGGCGG
AGCTGTCGGCCGTGGGCCTGCTCACCGGCGCTGGCACCAGCCTGCTCTCACAGGCCGCGG
TGGCACTGCGCCGCACGTACGTGGACCCCAACTTCGAGCCCAGCGTGCCCGTGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000577A_C01 KCC000577A_c01
         (1496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197857.2| expressed protein [Arabidopsis thaliana] gi|138...   204  3e-51
dbj|BAB09651.1| gb|AAD25674.1~gene_id:MXC17.8~similar to unknown...   146  8e-34
ref|NP_565930.1| chloroplast lumen common protein family [Arabid...    72  3e-11
dbj|BAB68096.1| B1088C09.1 [Oryza sativa (japonica cultivar-group)]    71  4e-11
ref|NP_191173.2| chloroplast lumen common protein family [Arabid...    69  2e-10

>ref|NP_197857.2| expressed protein [Arabidopsis thaliana]
            gi|13877883|gb|AAK44019.1|AF370204_1 unknown protein
            [Arabidopsis thaliana] gi|15912313|gb|AAL08290.1|
            AT5g24690/MXC17_8 [Arabidopsis thaliana]
            gi|22136914|gb|AAM91801.1| unknown protein [Arabidopsis
            thaliana]
          Length = 521

 Score =  204 bits (520), Expect = 3e-51
 Identities = 108/249 (43%), Positives = 160/249 (63%), Gaps = 3/249 (1%)
 Frame = +1

Query: 589  GSSGSLGAV-MERSRLEFVMPTPPAQAPKLDDGGDGGDIGKHNHNGGG-GGDDGGDDDDY 762
            G  GS+GAV +E+ +L+         +P++  GG GG+IGK  +NGGG GGDD GDDDDY
Sbjct: 88   GKFGSVGAVTLEKGKLDMTQKISET-SPEIATGGGGGNIGKSINNGGGDGGDDNGDDDDY 146

Query: 763  FNEDGDGDGEGGEGEGGNSFFRTV-IPESYDKLSIGAVFSEWMRTVAELPLIIRRAVEMG 939
            F+E  DGD    EG+    F R + + E +D+  + AV +EW +T+ +LP  +R+A EMG
Sbjct: 147  FDEFDDGD----EGDDDGLFRRRMFLAEIFDRKFVDAVLNEWQKTMMDLPAGLRQAYEMG 202

Query: 940  LFSSAQLVRFFSMDVRPNITRTVSRNLPPAWARDFVGRLMADPAFVQKMVIESAISAVAS 1119
            L SSAQ+V+F +++ RP  TR +SR LP   +R FVGR++ADPAF+ K+++E A +   S
Sbjct: 203  LVSSAQMVKFLAINARPTTTRMISRALPQGLSRAFVGRMLADPAFLYKLLLEQAATVGCS 262

Query: 1120 LYYEYRARGDRFKDELDLVLINTIGMAAATSATVWMVAPTRCYGTVHKFPWQQMLDSLPN 1299
            +++E + R +R K+E DL LIN + ++A  +A VW++AP R YG   +F  Q  L  LPN
Sbjct: 263  VWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLLAPCRSYGNTFRFDLQNTLQKLPN 322

Query: 1300 CVCRRQRPV 1326
             +     P+
Sbjct: 323  NLFEMSYPL 331

>dbj|BAB09651.1| gb|AAD25674.1~gene_id:MXC17.8~similar to unknown protein [Arabidopsis
            thaliana]
          Length = 356

 Score =  146 bits (369), Expect = 8e-34
 Identities = 69/164 (42%), Positives = 108/164 (65%)
 Frame = +1

Query: 835  IPESYDKLSIGAVFSEWMRTVAELPLIIRRAVEMGLFSSAQLVRFFSMDVRPNITRTVSR 1014
            + E +D+  + AV +EW +T+ +LP  +R+A EMGL SSAQ+V+F +++ RP  TR +SR
Sbjct: 3    LAEIFDRKFVDAVLNEWQKTMMDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRMISR 62

Query: 1015 NLPPAWARDFVGRLMADPAFVQKMVIESAISAVASLYYEYRARGDRFKDELDLVLINTIG 1194
             LP   +R FVGR++ADPAF+ K+++E A +   S+++E + R +R K+E DL LIN + 
Sbjct: 63   ALPQGLSRAFVGRMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLT 122

Query: 1195 MAAATSATVWMVAPTRCYGTVHKFPWQQMLDSLPNCVCRRQRPV 1326
            ++A  +A VW++AP R YG   +F  Q  L  LPN +     P+
Sbjct: 123  VSACNAAAVWLLAPCRSYGNTFRFDLQNTLQKLPNNLFEMSYPL 166

>ref|NP_565930.1| chloroplast lumen common protein family [Arabidopsis thaliana]
            gi|30688262|ref|NP_850329.1| chloroplast lumen common
            protein family [Arabidopsis thaliana]
            gi|25344247|pir||A84829 hypothetical protein At2g40400
            [imported] - Arabidopsis thaliana
            gi|4586056|gb|AAD25674.1| chloroplast lumen common
            protein family [Arabidopsis thaliana]
            gi|15294188|gb|AAK95271.1|AF410285_1 At2g40400/T3G21.17
            [Arabidopsis thaliana] gi|20857082|gb|AAM26698.1|
            At2g40400/T3G21.17 [Arabidopsis thaliana]
          Length = 735

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 42/131 (32%), Positives = 68/131 (51%)
 Frame = +1

Query: 847  YDKLSIGAVFSEWMRTVAELPLIIRRAVEMGLFSSAQLVRFFSMDVRPNITRTVSRNLPP 1026
            +D+  I  V +   R    LP  I++ +++GL S   L  FF ++  P I+    R    
Sbjct: 409  FDRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQR---- 464

Query: 1027 AWARDFVGRLMADPAFVQKMVIESAISAVASLYYEYRARGDRFKDELDLVLINTIGMAAA 1206
               + F  RL+ADP F+ ++ IE AIS   +L  +Y  R + F +ELD V+ +++  +  
Sbjct: 465  --FQGFRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVV 522

Query: 1207 TSATVWMVAPT 1239
               TVW+ APT
Sbjct: 523  DFFTVWLPAPT 533

>dbj|BAB68096.1| B1088C09.1 [Oryza sativa (japonica cultivar-group)]
          Length = 723

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 41/131 (31%), Positives = 67/131 (50%)
 Frame = +1

Query: 847  YDKLSIGAVFSEWMRTVAELPLIIRRAVEMGLFSSAQLVRFFSMDVRPNITRTVSRNLPP 1026
            +D+  I  V +   R    LP  +++ +++G+ S   L  FF ++  P +   + R    
Sbjct: 391  FDRAEIARVMNAAGRRREALPQDLQKGIDLGVVSPEILQNFFDLEKYPVMAELIHR---- 446

Query: 1027 AWARDFVGRLMADPAFVQKMVIESAISAVASLYYEYRARGDRFKDELDLVLINTIGMAAA 1206
               + F  RL+ADP F+ ++ IE  IS   +L  +Y  R  RF +E+D VL +TI  +  
Sbjct: 447  --FQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEEIDYVLTDTIRGSVV 504

Query: 1207 TSATVWMVAPT 1239
               TVW+ APT
Sbjct: 505  DFFTVWLPAPT 515

>ref|NP_191173.2| chloroplast lumen common protein family [Arabidopsis thaliana]
            gi|20260424|gb|AAM13110.1| putative protein [Arabidopsis
            thaliana] gi|34098801|gb|AAQ56783.1| At3g56140
            [Arabidopsis thaliana]
          Length = 745

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 41/131 (31%), Positives = 66/131 (50%)
 Frame = +1

Query: 847  YDKLSIGAVFSEWMRTVAELPLIIRRAVEMGLFSSAQLVRFFSMDVRPNITRTVSRNLPP 1026
            +D+  I  V +   R    LP  I+  +++GL S   L   F ++  P I+    R    
Sbjct: 418  FDRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQR---- 473

Query: 1027 AWARDFVGRLMADPAFVQKMVIESAISAVASLYYEYRARGDRFKDELDLVLINTIGMAAA 1206
               + F  RL+ADP F+ ++ IE AIS   +L  +Y  R + F +E+D V+ +T+  +  
Sbjct: 474  --FQGFRERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVV 531

Query: 1207 TSATVWMVAPT 1239
               TVW+ APT
Sbjct: 532  DFFTVWLPAPT 542



EST assemble image


clone accession position
1 MXL071c12_r BP097179 1 455
2 LCL004e10_r AV626221 3 438
3 LCL011d01_r AV626560 5 181
4 CL44a01_r AV395601 14 501
5 MXL030c08_r BP094817 15 313
6 LCL046g05_r AV628766 251 768
7 MXL049g03_r BP095940 252 642
8 HC012f09_r AV632795 252 696
9 MXL075h07_r BP097448 253 635
10 MXL032e12_r BP094923 256 650
11 HC061f11_r AV636602 258 692
12 HC036h10_r AV634718 258 722
13 HCL001c02_r AV639576 259 596
14 MXL044b06_r BP095581 265 482
15 LCL095f01_r AV631523 265 596
16 MXL036g04_r BP095152 634 932
17 HCL070g06_r AV643502 752 1230
18 MXL048d05_r BP095854 850 1247
19 MXL013g12_r BP093790 1090 1442
20 HC074b09_r AV637524 1119 1502




Chlamydomonas reinhardtii
Kazusa DNA Research Institute