Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000576A_C01 KCC000576A_c01
(467 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum] 56 2e-07
dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella... 55 5e-07
gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] 54 7e-07
ref|XP_330147.1| hypothetical protein [Neurospora crassa] gi|289... 54 1e-06
ref|NP_193696.2| RNA recognition motif (RRM)-containing protein ... 51 8e-06
>gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 55.8 bits (133), Expect = 2e-07
Identities = 31/82 (37%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Frame = +3
Query: 222 SRSLFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHR-SGRSAGFAIVTFLRHEEAVAAM 398
S LF GL+ G + L FS +G V + ++ R +GRS GF ++F EEA +AM
Sbjct: 39 SSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAM 98
Query: 399 QAVDNLMFMGRRLSVKWFSPER 464
QA+D GRR+ V + + +R
Sbjct: 99 QAMDGQDLHGRRIKVNYATEKR 120
>dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 54.7 bits (130), Expect = 5e-07
Identities = 32/74 (43%), Positives = 43/74 (57%), Gaps = 1/74 (1%)
Frame = +3
Query: 231 LFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHR-SGRSAGFAIVTFLRHEEAVAAMQAV 407
LF GLA G T ++ FS FG VT+ +I R +GRS GF VTF ++A AA+QA+
Sbjct: 44 LFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQAL 103
Query: 408 DNLMFMGRRLSVKW 449
D GR + V +
Sbjct: 104 DGRDLAGRTIRVNY 117
>gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/82 (36%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Frame = +3
Query: 222 SRSLFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHR-SGRSAGFAIVTFLRHEEAVAAM 398
S LF GL+ G + L FS +G V + ++ R +GRS GF ++F EEA +A+
Sbjct: 39 SSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASAL 98
Query: 399 QAVDNLMFMGRRLSVKWFSPER 464
QA+D GRR+ V + + +R
Sbjct: 99 QAMDGQDLHGRRIRVNYATEKR 120
>ref|XP_330147.1| hypothetical protein [Neurospora crassa] gi|28927154|gb|EAA36110.1|
hypothetical protein [Neurospora crassa]
Length = 606
Score = 53.5 bits (127), Expect = 1e-06
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 183 PAAT--AGPQSVIGPSRSLFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHRSGRSAGFA 356
PAAT A Q + F + + T HL F FG VTD +AR G S G+
Sbjct: 334 PAATEEAAVQKDTTEGHAAFVRNIVFDATEEHLKGAFEKFGNVTDVFLARDPRGLSKGYG 393
Query: 357 IVTFLRHEEAVAAMQAVDNLMFMGRRLSVKWFSPERA 467
VTF E A VD + GRR+SV+ P RA
Sbjct: 394 FVTFATREALEEACSQVDGSFWHGRRISVE---PRRA 427
>ref|NP_193696.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 50.8 bits (120), Expect = 8e-06
Identities = 25/83 (30%), Positives = 44/83 (52%)
Frame = +3
Query: 219 PSRSLFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHRSGRSAGFAIVTFLRHEEAVAAM 398
P L K +A T L +FS FG + ++ + G+ AG+A V F+ +EA+ A
Sbjct: 667 PCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAK 726
Query: 399 QAVDNLMFMGRRLSVKWFSPERA 467
+A+ + F GR L ++W + + +
Sbjct: 727 KALASTHFYGRHLVLEWANDDNS 749
Score = 40.0 bits (92), Expect = 0.013
Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 LFAKGLAKGCTSAHLHAIFSNFGVVTDCQIARHR-SGRSAGFAIVTFLRHEEAVAAMQAV 407
LF + L T L FS FG +++ + + + RS G A + +L E A AM+ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 408 DNLMFMGRRLSV 443
DN F GR L +
Sbjct: 323 DNSSFQGRLLHI 334
