Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000570A_C02 KCC000570A_c02
(1429 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC79991.1| putative 40S ribosomal protein [Oryza sativa (ja... 265 3e-88
sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin rec... 255 3e-87
ref|NP_187128.1| 40S ribosomal protein SA (RPSaB) [Arabidopsis t... 256 3e-87
ref|NP_177381.1| 40S ribosomal protein SA (RPSaA) [Arabidopsis t... 256 4e-87
gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza ... 264 5e-87
>dbj|BAC79991.1| putative 40S ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 305
Score = 265 bits (677), Expect(2) = 3e-88
Identities = 126/159 (79%), Positives = 142/159 (89%)
Frame = +2
Query: 47 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVA 226
LSQ+EQDIQMMLAA HLGTKNC +QMERY+Y+RR DGIYIINL KT+EKLQ+AAR+IVA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 227 IENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDP 406
IENPQDI V SARPYGQRAV KFAQY G ++AGRHTPGTFTNQ+Q +F EPRLLILTDP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 407 RTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNK 523
RTDHQP+KES+ NIPTIAFCDTDSP+ +VD+ IPANNK
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 84.7 bits (208), Expect(2) = 3e-88
Identities = 56/124 (45%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Frame = +3
Query: 510 PPTTRCKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREPEEAKEAGEEETF-- 683
P + K SIG L++LLARMVL+MR I + W V VDLFFYR+PEEAKE EEE
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALV 225
Query: 684 -----EAEGYALPAPVGAAENWGEAAAPAPEA----AGYDGAAAAGGFEAAAGFEAAAPP 836
YA PA WG AA P A AG D AA AA G++ AA P
Sbjct: 226 APDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAPA--PAAGGWDTAAAP 283
Query: 837 VAGY 848
G+
Sbjct: 284 APGW 287
>sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin receptor-like protein)
gi|3769681|gb|AAC97937.1| laminin receptor-like protein
[Brassica napus]
Length = 292
Score = 255 bits (651), Expect(2) = 3e-87
Identities = 121/159 (76%), Positives = 137/159 (86%)
Frame = +2
Query: 47 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVA 226
LSQKE DI+MM AA+ HLGTKNC+YQMERY+++RR DGIYI NL KT+EKL MAAR+IVA
Sbjct: 9 LSQKEADIKMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLMMAARVIVA 68
Query: 227 IENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDP 406
IENPQDI V SARPYGQRAV KFAQY G ++AGRHTPGTFTNQ+Q +F EPRLLILTDP
Sbjct: 69 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 128
Query: 407 RTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNK 523
RTDHQP+KE + NIP IAFCDTDSP+ VD+ IPANNK
Sbjct: 129 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNK 167
Score = 91.3 bits (225), Expect(2) = 3e-87
Identities = 55/124 (44%), Positives = 67/124 (53%), Gaps = 15/124 (12%)
Frame = +3
Query: 510 PPTTRCKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREPEEAKEAGEEETFEA 689
P + KHSIG L++LLARMVL+MR I W V VDLFFYREPEE K E+E
Sbjct: 163 PANNKGKHSIGCLFWLLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVAPQ 222
Query: 690 EGYALPAP-VGAAENW-----------GEAAAP---APEAAGYDGAAAAGGFEAAAGFEA 824
+ LPAP G + W GEA AP AP A ++ +AA A G++A
Sbjct: 223 AEFGLPAPEYGGGDQWTTAAIPDAAWPGEAQAPISAAPAAGSWNDSAAPAA--AEGGWDA 280
Query: 825 AAPP 836
A PP
Sbjct: 281 AVPP 284
>ref|NP_187128.1| 40S ribosomal protein SA (RPSaB) [Arabidopsis thaliana]
gi|1498629|gb|AAB67866.1| p40 protein homolog
[Arabidopsis thaliana]
gi|6175177|gb|AAF04903.1|AC011437_18 putative 40S
ribosomal protein [Arabidopsis thaliana]
Length = 280
Score = 256 bits (655), Expect(2) = 3e-87
Identities = 121/159 (76%), Positives = 140/159 (87%)
Frame = +2
Query: 47 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVA 226
+S+KE DIQMML+A HLGTKNC+YQMERY+++RR DGIYIINL KT++KLQMAAR+IVA
Sbjct: 13 VSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVA 72
Query: 227 IENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDP 406
IENP+DI V SARPYGQRAV KFAQY G ++AGRHTPGTFTNQ+Q +F EPRLLILTDP
Sbjct: 73 IENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 132
Query: 407 RTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNK 523
RTDHQP+KE + NIPTIAFCDTDSP+ VD+ IPANNK
Sbjct: 133 RTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNK 171
Score = 89.7 bits (221), Expect(2) = 3e-87
Identities = 56/117 (47%), Positives = 68/117 (57%), Gaps = 4/117 (3%)
Frame = +3
Query: 510 PPTTRCKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREPEEAKEAGEEETFEA 689
P + KHSIG L++LLARMVL+MR I W V VDLFFYREPEEAK+ G+EE
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQ 226
Query: 690 EGYALPAPVGAAENWGEA----AAPAPEAAGYDGAAAAGGFEAAAGFEAAAPPVAGY 848
Y + VG + W A AA + E AA A G AAG+EAA+ P AG+
Sbjct: 227 ADYGM---VG-GDQWTTAQISDAAWSGEVEQPISAAPAVGVTVAAGWEAASVPAAGW 279
>ref|NP_177381.1| 40S ribosomal protein SA (RPSaA) [Arabidopsis thaliana]
gi|25295580|pir||F96747 hypothetical protein T10D10.16
[imported] - Arabidopsis thaliana
gi|402904|gb|AAA53425.1| laminin receptor-like protein
gi|12325280|gb|AAG52587.1|AC016529_18 putative 40S
ribosomal protein SA (laminin receptor-like protein);
68387-70081 [Arabidopsis thaliana]
gi|15809888|gb|AAL06872.1| At1g72370/T10D10_16
[Arabidopsis thaliana] gi|16604531|gb|AAL24271.1|
At1g72370/T10D10_16 [Arabidopsis thaliana]
gi|17473615|gb|AAL38272.1| putative 40S ribosomal
protein SA (laminin receptor-like protein) [Arabidopsis
thaliana] gi|18958036|gb|AAL79591.1| At1g72370/T10D10_16
[Arabidopsis thaliana] gi|21386953|gb|AAM47880.1|
putative 40S ribosomal protein SA (laminin receptor-like
protein) [Arabidopsis thaliana]
gi|21593556|gb|AAM65523.1| putative 40S ribosomal
protein SA (laminin receptor-like protein) [Arabidopsis
thaliana] gi|22530972|gb|AAM96990.1| putative 40S
ribosomal protein SA (laminin receptor-like protein)
[Arabidopsis thaliana] gi|23198426|gb|AAN15740.1|
putative 40S ribosomal protein SA (laminin receptor-like
protein) [Arabidopsis thaliana]
Length = 298
Score = 256 bits (655), Expect(2) = 4e-87
Identities = 121/159 (76%), Positives = 138/159 (86%)
Frame = +2
Query: 47 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVA 226
LSQKE D++MM AA+ HLGTKNC+YQMERY+++RR DGIYI NL KT+EKLQMAAR+IVA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 227 IENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDP 406
IENPQDI V SARPYGQRAV KFAQY G ++AGRHTPGTFTNQ+Q +F EPRLLILTDP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 407 RTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNK 523
RTDHQP+KE + NIP IAFCDTDSP+ VD+ IPANNK
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNK 170
Score = 89.4 bits (220), Expect(2) = 4e-87
Identities = 60/127 (47%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Frame = +3
Query: 510 PPTTRCKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREPEEAKEAGEEETF-E 686
P + KHSIG L++LLARMVL+MR I W V VDLFFYREPEE K E+E +
Sbjct: 166 PANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225
Query: 687 AEGYALPAP---VGAAENW-----------GEAAAP---APEAAGYDGAAAAGGFEAAAG 815
AE ALPAP + + W GE AP AP AA + +AAA A G
Sbjct: 226 AEYGALPAPEYGMVGGDQWTTAQIPDAAWPGEGQAPISAAPAAASWSDSAAA---PADGG 282
Query: 816 FEAAAPP 836
+EAAAPP
Sbjct: 283 WEAAAPP 289
>gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza sativa]
Length = 305
Score = 264 bits (674), Expect(2) = 5e-87
Identities = 125/159 (78%), Positives = 141/159 (88%)
Frame = +2
Query: 47 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVA 226
LSQ EQD+QMMLAA HLGTKNC +QMERY+Y+RR DGIYIINL KT+EKLQ+AAR+IVA
Sbjct: 12 LSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVA 71
Query: 227 IENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDP 406
IENPQDI V SARPYGQRAV KFAQY G ++AGRHTPGTFTNQ+Q +F EPRLLILTDP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 407 RTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNK 523
RTDHQP+KES+ NIPTIAFCDTDSP+ +VD+ IPANNK
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 81.6 bits (200), Expect(2) = 5e-87
Identities = 52/117 (44%), Positives = 66/117 (55%), Gaps = 6/117 (5%)
Frame = +3
Query: 510 PPTTRCKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREPEEAKEAGEEETFEA 689
P + ++SIG L++LLARMVL+MR I + W V VDLFFYR+PEEAKE +EE A
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKE--QEEEAPA 223
Query: 690 EGYALPAPVGAAENW------GEAAAPAPEAAGYDGAAAAGGFEAAAGFEAAAPPVA 842
+ +A A E W + AAP P A D AA AA G++ A PVA
Sbjct: 224 QDFAAITDYTAPEQWSADQWTSDVAAP-PAATVGDWGAAPAPVAAAEGWDQAGAPVA 279
