KCC000565A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000565A_C01 KCC000565A_c01
catgatccgccacgaccgcgactccgtgctggtgcccatcccgcagtacccgctgtacag
cgcctccatccgcctgtacgGCGGCACGCTGGTGGGCTACTTCCTGGATGAGCGCCGCGG
CTGGGGCCTGTCCGTGGAGGAGCTGCAGCGCGCGCTGCAGGAGGCGCGCGAGGAGGGCAA
GCTGGTGCGCGGCCTGGTGTTTATCAACCCCGGTAACCCCACCGGCCAGTGCTTGAGCAA
GGAGAACCTGCAGGAGCTGATCAAGTTTGCGTACCAGGAGAAGATTGTGCTCATGGCGGA
TGAGGTGTACCAGGAGAACGTGTACCAGGATGAGCGGCCGTTTGTGAGCGCCAAGAAGGT
GATGTGGGAGATGGGCGAGCCCTACCGCAGCCACGTGGAGCTGCTGTCCTTCCACACCGT
GTCCAAGGGCACTGCCGGCGAGTGCGGCCTGCGCGGCGGCTACGTGGAGATGACTAACAT
CCACCCCGGCGCCATTGAGGAGGTGTACAAGTGCGCCTCCATTAACCTGTCGCCCAACAC
CATGGGCCAGATCGCGCTGTCCGTGCTCGTCAACCCGCCCAAGCCCGGCGATCCCTCTTA
CGACCAGTACACCAAGGAGAAGGCCTCGGAGCTGGTGTCGCTGCGCCGCCGCGCGCACAT
GGTGACGGACGGCTTCAACGCGCTGGACGGCGTCACCTGCAACTTCACCGAGGGCGCCAT
GTACAGCTTCCCCCAGATTAAGCTGCCGGCCAAGGCGCTGGAGGCCGCCAAGGCCGCCGG
AAAGGCGGGCGACGTGTTCTACTGCCTCAAACTTCTGGAGGCCACCGGCATCTCCACCGT
GCCCGGCAGCGGCTTCGGCCAGGAGGAGGGCACCTTCCACCTGCGCACCACCATTCTGCC
TCGCGAGGAGGTGATGACGCACTTCGTGGAGAAGTTCGACAAGTTCCACAAGGACTTCAT
GAAGCAGTATTCGTAACAGCTTAGCAATTCGAGAAGCAGCGTAGCTGCGGAAGGTGTGCG
GAAACGTGGCGAGCCAGCAGCGGCGCATGGGGTTTCTACCGCAATTAAGCCATGTGAAGT
GGTATGAGGCTACGGCGTGTTGCCACGGCAGGTCATCCGGATCACGGTTGCATTGCTCCT
TTTTTGCCGCTGTTGCGCTACTGCTCCTGCTGTAATGCAGAACCCTATGCCTCCCGCCTT
GCTGACTGGCTGGGTGCAGCCACGCAGGGGCATCCCTGGCTTATGTCTGTCGTGCTGGGT
TAGGATGAGAGCTTTCCCATGAGCGGCCTTTGTTGGTGTCGTGTTTTGTTGCGCAATTGT
TGCTGTATCCTGGTGGAGAGCAGAGAGCGAGCTTATCTGAGCGCTAGGGGTCCATTCCCT
GGCCCACTGCGCCGGTTTTCCATGCATGCGGCAAGGTGACAGAGGTTGGGCTTTTTGAAG
CAGGCGTCTGGTCAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000565A_C01 KCC000565A_c01
         (1457 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T08064 alanine transaminase (EC 2.6.1.2) - Chlamydomonas re...   649  0.0
gb|AAK68842.1| alanine aminotransferase-like protein [Arabidopsi...   442  e-123
gb|AAL24255.1| At1g23310/F26F24_4 [Arabidopsis thaliana] gi|2736...   442  e-123
ref|NP_564192.2| alanine aminotransferase -related [Arabidopsis ...   442  e-123
ref|NP_177215.1| alanine aminotransferase, putative [Arabidopsis...   440  e-122

>pir||T08064 alanine transaminase (EC 2.6.1.2) - Chlamydomonas reinhardtii
            gi|1353352|gb|AAB01685.1| alanine aminotransferase
          Length = 521

 Score =  649 bits (1673), Expect = 0.0
 Identities = 320/324 (98%), Positives = 321/324 (98%)
 Frame = +2

Query: 2    MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQEAREEGK 181
            MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQE+REEGK
Sbjct: 198  MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQESREEGK 257

Query: 182  LVRGLVFINPGNPTGQCLSKENLQELIKFAYQEKIVLMADEVYQENVYQDERPFVSAKKV 361
            LVRGLVFINPGNPTGQCLSKENLQELIK AYQEKIVLMADEVYQENVYQDERPFVSAKKV
Sbjct: 258  LVRGLVFINPGNPTGQCLSKENLQELIKLAYQEKIVLMADEVYQENVYQDERPFVSAKKV 317

Query: 362  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 541
            MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT
Sbjct: 318  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 377

Query: 542  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRAHMVTDGFNALDGVTCNFTEGAM 721
            MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRR HMVTDGFNALDGVTCNFTEGAM
Sbjct: 378  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRRHMVTDGFNALDGVTCNFTEGAM 437

Query: 722  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 901
            YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP
Sbjct: 438  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 497

Query: 902  REEVMTHFVEKFDKFHKDFMKQYS 973
            REEVMT FVEKFDKFHKDFMKQYS
Sbjct: 498  REEVMTTFVEKFDKFHKDFMKQYS 521

>gb|AAK68842.1| alanine aminotransferase-like protein [Arabidopsis thaliana]
          Length = 379

 Score =  442 bits (1137), Expect = e-123
 Identities = 208/323 (64%), Positives = 255/323 (78%)
 Frame = +2

Query: 2    MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQEAREEGK 181
            +IR + D +LVP+PQYPLYSA+I L GGTLV Y+LDE   WGL V  L++++ +AR +G 
Sbjct: 48   VIRGNGDGILVPVPQYPLYSATISLLGGTLVPYYLDESENWGLDVANLRQSVAQARSQGI 107

Query: 182  LVRGLVFINPGNPTGQCLSKENLQELIKFAYQEKIVLMADEVYQENVYQDERPFVSAKKV 361
             VR +V INPGNPTGQCLS+ N++E++KF Y EK+VL+ DEVYQ+N+YQDERPF+S+KKV
Sbjct: 108  TVRAMVIINPGNPTGQCLSEANIREILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKV 167

Query: 362  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 541
            + EMG P+   V+L+SFHTVSKG  GECG RGGY EMTN+ P  +EE+YK ASI LSPN 
Sbjct: 168  LMEMGSPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNV 227

Query: 542  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRAHMVTDGFNALDGVTCNFTEGAM 721
              QI + ++VNPPKPGD SYDQ+ +E    L SLRRRA ++TDGFN+   V CNFTEGAM
Sbjct: 228  SAQIFMGLMVNPPKPGDISYDQFARESKGILESLRRRARLMTDGFNSCKNVVCNFTEGAM 287

Query: 722  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 901
            YSFPQI+LP  AL+AAK AGK  DVFYCLKLLEATGISTVPGSGFGQ+EG FHLRTTILP
Sbjct: 288  YSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 347

Query: 902  REEVMTHFVEKFDKFHKDFMKQY 970
             E+ M   ++ F KF+ +FM QY
Sbjct: 348  AEDEMPEIMDSFKKFNDEFMTQY 370

>gb|AAL24255.1| At1g23310/F26F24_4 [Arabidopsis thaliana] gi|27363280|gb|AAO11559.1|
            At1g23310/F26F24_4 [Arabidopsis thaliana]
          Length = 481

 Score =  442 bits (1137), Expect = e-123
 Identities = 208/323 (64%), Positives = 255/323 (78%)
 Frame = +2

Query: 2    MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQEAREEGK 181
            +IR + D +LVP+PQYPLYSA+I L GGTLV Y+LDE   WGL V  L++++ +AR +G 
Sbjct: 150  VIRGNGDGILVPVPQYPLYSATISLLGGTLVPYYLDESENWGLDVANLRQSVAQARSQGI 209

Query: 182  LVRGLVFINPGNPTGQCLSKENLQELIKFAYQEKIVLMADEVYQENVYQDERPFVSAKKV 361
             VR +V INPGNPTGQCLS+ N++E++KF Y EK+VL+ DEVYQ+N+YQDERPF+S+KKV
Sbjct: 210  TVRAMVIINPGNPTGQCLSEANIREILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKV 269

Query: 362  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 541
            + EMG P+   V+L+SFHTVSKG  GECG RGGY EMTN+ P  +EE+YK ASI LSPN 
Sbjct: 270  LMEMGSPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNV 329

Query: 542  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRAHMVTDGFNALDGVTCNFTEGAM 721
              QI + ++VNPPKPGD SYDQ+ +E    L SLRRRA ++TDGFN+   V CNFTEGAM
Sbjct: 330  SAQIFMGLMVNPPKPGDISYDQFARESKGILESLRRRARLMTDGFNSCKNVVCNFTEGAM 389

Query: 722  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 901
            YSFPQI+LP  AL+AAK AGK  DVFYCLKLLEATGISTVPGSGFGQ+EG FHLRTTILP
Sbjct: 390  YSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 449

Query: 902  REEVMTHFVEKFDKFHKDFMKQY 970
             E+ M   ++ F KF+ +FM QY
Sbjct: 450  AEDEMPEIMDSFKKFNDEFMTQY 472

>ref|NP_564192.2| alanine aminotransferase -related [Arabidopsis thaliana]
            gi|25287209|pir||B86367 protein F26F24.16 [imported] -
            Arabidopsis thaliana gi|9295709|gb|AAF87015.1|AC005292_24
            F26F24.16 [Arabidopsis thaliana]
            gi|15912203|gb|AAL08235.1| At1g23310/F26F24_4
            [Arabidopsis thaliana] gi|23297208|gb|AAN12918.1|
            putative alanine aminotransferase [Arabidopsis thaliana]
            gi|24461827|gb|AAN62332.1|AF479639_1 glutamate:glyoxylate
            aminotransferase 1 [Arabidopsis thaliana]
          Length = 481

 Score =  442 bits (1137), Expect = e-123
 Identities = 208/323 (64%), Positives = 255/323 (78%)
 Frame = +2

Query: 2    MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQEAREEGK 181
            +IR + D +LVP+PQYPLYSA+I L GGTLV Y+LDE   WGL V  L++++ +AR +G 
Sbjct: 150  VIRGNGDGILVPVPQYPLYSATISLLGGTLVPYYLDESENWGLDVANLRQSVAQARSQGI 209

Query: 182  LVRGLVFINPGNPTGQCLSKENLQELIKFAYQEKIVLMADEVYQENVYQDERPFVSAKKV 361
             VR +V INPGNPTGQCLS+ N++E++KF Y EK+VL+ DEVYQ+N+YQDERPF+S+KKV
Sbjct: 210  TVRAMVIINPGNPTGQCLSEANIREILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKV 269

Query: 362  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 541
            + EMG P+   V+L+SFHTVSKG  GECG RGGY EMTN+ P  +EE+YK ASI LSPN 
Sbjct: 270  LMEMGSPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNV 329

Query: 542  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRAHMVTDGFNALDGVTCNFTEGAM 721
              QI + ++VNPPKPGD SYDQ+ +E    L SLRRRA ++TDGFN+   V CNFTEGAM
Sbjct: 330  SAQIFMGLMVNPPKPGDISYDQFARESKGILESLRRRARLMTDGFNSCKNVVCNFTEGAM 389

Query: 722  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 901
            YSFPQI+LP  AL+AAK AGK  DVFYCLKLLEATGISTVPGSGFGQ+EG FHLRTTILP
Sbjct: 390  YSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 449

Query: 902  REEVMTHFVEKFDKFHKDFMKQY 970
             E+ M   ++ F KF+ +FM QY
Sbjct: 450  AEDEMPEIMDSFKKFNDEFMTQY 472

>ref|NP_177215.1| alanine aminotransferase, putative [Arabidopsis thaliana]
            gi|25287210|pir||H96729 probable alanine aminotransferase
            F5A18.24 - Arabidopsis thaliana
            gi|12324762|gb|AAG52344.1|AC011663_23 putative alanine
            aminotransferase; 91367-88744 [Arabidopsis thaliana]
            gi|12325053|gb|AAG52480.1|AC010796_19 putative alanine
            aminotransferase; 63135-65758 [Arabidopsis thaliana]
            gi|14334914|gb|AAK59635.1| putative alanine
            aminotransferase [Arabidopsis thaliana]
            gi|17104535|gb|AAL34156.1| putative alanine
            aminotransferase [Arabidopsis thaliana]
            gi|24461829|gb|AAN62333.1|AF479640_1 glutamate:glyoxylate
            aminotransferase 2 [Arabidopsis thaliana]
          Length = 481

 Score =  440 bits (1132), Expect = e-122
 Identities = 208/331 (62%), Positives = 258/331 (77%)
 Frame = +2

Query: 2    MIRHDRDSVLVPIPQYPLYSASIRLYGGTLVGYFLDERRGWGLSVEELQRALQEAREEGK 181
            +IR  +D +LVP+PQYPLYSA+I L GGTLV Y+L+E   WGL V  L++++ +AR +G 
Sbjct: 150  VIRGQKDGILVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSQGI 209

Query: 182  LVRGLVFINPGNPTGQCLSKENLQELIKFAYQEKIVLMADEVYQENVYQDERPFVSAKKV 361
             VR +V INPGNPTGQCLS+ N++E+++F   E++VL+ DEVYQ+N+YQDERPF+S+KKV
Sbjct: 210  TVRAMVIINPGNPTGQCLSEANIREILRFCCDERLVLLGDEVYQQNIYQDERPFISSKKV 269

Query: 362  MWEMGEPYRSHVELLSFHTVSKGTAGECGLRGGYVEMTNIHPGAIEEVYKCASINLSPNT 541
            + +MG P    V+L+SFHTVSKG  GECG RGGY EMTNI P  +EE+YK ASI LSPN 
Sbjct: 270  LMDMGAPISKEVQLISFHTVSKGYWGECGQRGGYFEMTNIPPRTVEEIYKVASIALSPNV 329

Query: 542  MGQIALSVLVNPPKPGDPSYDQYTKEKASELVSLRRRAHMVTDGFNALDGVTCNFTEGAM 721
              QI + ++V+PPKPGD SYDQ+ +E    L SLRRRA M+TDGFN+   V CNFTEGAM
Sbjct: 330  SAQIFMGLMVSPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAM 389

Query: 722  YSFPQIKLPAKALEAAKAAGKAGDVFYCLKLLEATGISTVPGSGFGQEEGTFHLRTTILP 901
            YSFPQIKLP+KA++AAK AGK  DVFYCLKLLEATGISTVPGSGFGQ+EG FHLRTTILP
Sbjct: 390  YSFPQIKLPSKAIQAAKQAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 449

Query: 902  REEVMTHFVEKFDKFHKDFMKQYS*QLSNSR 994
             EE M   ++ F KF+ +FM QY+     SR
Sbjct: 450  AEEEMPEIMDSFKKFNDEFMSQYADNFGYSR 480



EST assemble image


clone accession position
1 LC040f09_r AV621765 1 501
2 CM077h12_r AV391798 173 794
3 MX220a12_r BP090181 230 605
4 LC074b09_r AV624189 335 821
5 CM030a03_r AV397420 368 953
6 CM018f04_r AV387246 418 906
7 LC032h11_r AV621224 449 992
8 LC045f12_r AV622083 487 1051
9 LC045f08_r AV622289 727 1209
10 HC018b04_r AV633212 739 1327
11 MX237b05_r BP091336 739 1132
12 HC092g02_r AV638930 745 1281
13 CL42f09_r AV395488 797 1154
14 HC032a03_r AV634329 896 1390
15 LC030h04_r AV621075 920 1457
16 MX239g12_r BP091491 950 1370
17 HC090c01_r AV638740 980 1438




Chlamydomonas reinhardtii
Kazusa DNA Research Institute