KCC000563A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000563A_C01 KCC000563A_c01
gtaaactcgctattaTTCTTAGGCCTATAAAGTGCCGTGAGCAGCTGTAGAAACAGAAAC
TTGCCTCGCGCGCTGCTTGGCACGGATCACCATGACGTAGTCTTTTCGCGGCAGAGCCGC
TCAAGTGTGTTAGCGTTAGAAATTCTGCGCTAGCTTTAGAATGTCGGTAGCGGGTCCCCG
CTCGGGGAGCAAGCTCGCTGGAGCCGCTTCTAAGAGCTACAATGTGGCAGCGATTTGGGA
GAAGACAGCGGCTTTGAGCGAAGGCCAGCTTCGGGCCATCGAGTCGCTGGGTCAATGCTG
CTCGCAGCGGCCCCTGCCCTCACACGTGGTGGACGACGTACGCTCCGCCTCCTCCGCGCA
AGGGGGCGCCGAGCCCCGCAGTGGCGGCGCAGCCGCCACCTCCACCAGCAGCAGCGGCGG
CGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000563A_C01 KCC000563A_c01
         (423 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H96760 unknown protein [imported] - Arabidopsis thaliana gi...    47  6e-05
ref|NP_177485.2| expressed protein [Arabidopsis thaliana]              47  6e-05
gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana]               47  6e-05
ref|NP_033541.1| Wiskott-Aldrich syndrome homolog; Wiskott-Aldri...    40  0.010
gb|AAH02961.1|AAH02961 Unknown (protein for IMAGE:3542929) [Homo...    40  0.010

>pir||H96760 unknown protein [imported] - Arabidopsis thaliana
           gi|11120801|gb|AAG30981.1|AC012396_17 unknown protein
           [Arabidopsis thaliana]
          Length = 745

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 170 AGPRSGSKLAGAASKSYNVAAIWEKTAALSEGQLRAIESLGQCCSQRPLPSHVVDD 337
           A   S    +GA SK YN A+ WE++A L+E Q  AI SL    ++RP P+++V +
Sbjct: 5   AASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60

>ref|NP_177485.2| expressed protein [Arabidopsis thaliana]
          Length = 784

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 170 AGPRSGSKLAGAASKSYNVAAIWEKTAALSEGQLRAIESLGQCCSQRPLPSHVVDD 337
           A   S    +GA SK YN A+ WE++A L+E Q  AI SL    ++RP P+++V +
Sbjct: 5   AASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60

>gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana]
          Length = 784

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 170 AGPRSGSKLAGAASKSYNVAAIWEKTAALSEGQLRAIESLGQCCSQRPLPSHVVDD 337
           A   S    +GA SK YN A+ WE++A L+E Q  AI SL    ++RP P+++V +
Sbjct: 5   AASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60

>ref|NP_033541.1| Wiskott-Aldrich syndrome homolog; Wiskott-Aldrich syndrome protein
           [Mus musculus] gi|2499130|sp|P70315|WASP_MOUSE
           Wiskott-Aldrich syndrome protein homolog (WASp)
           gi|1314755|gb|AAC52556.1| Wiskott-Aldrich Syndrome
           Protein gi|4096355|gb|AAC99855.1| Wiskott-Aldrich
           syndrome protein (WASP) [Mus musculus]
           gi|1584081|prf||2122283A Wiskott-Aldrich syndrome
           protein
          Length = 520

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +3

Query: 294 NAARSGPCPHTWWTTYAPPPPRKGAPSPAVAAQPPPPPAA 413
           N  RSGP P        PPP  +G P P     PPPPP A
Sbjct: 352 NKGRSGPLPPVPMGGAPPPPTPRGPPPPGRGGPPPPPPPA 391

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 312 PCPHTWWTTYAPPPPRKGAPSPAVAAQPPPPP 407
           P P     +  PPPP  GA  P     PPPPP
Sbjct: 387 PPPPATGRSGPPPPPLPGAGGPPAPPPPPPPP 418

>gb|AAH02961.1|AAH02961 Unknown (protein for IMAGE:3542929) [Homo sapiens]
          Length = 514

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +3

Query: 294 NAARSGPCPHTWWTTYAPPPPRKGAPSPAVAAQPPPPPAA 413
           N  RSGP P        PPP  +G P P     PPPPP A
Sbjct: 347 NKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPA 386

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 303 RSGPCPHTWWTTYAPPPPRKGAPSPAVAAQPPPPPAAA 416
           RSGP P        PPPP  G P       PPPPP ++
Sbjct: 389 RSGPLP--------PPPPGAGGPPMPPPPPPPPPPPSS 418



EST assemble image


clone accession position
1 CL42d12_r AV395509 1 253
2 LCL020f07_r AV627071 16 355
3 LCL036a04_r AV628051 64 270
4 HCL021e07_r AV640735 125 424




Chlamydomonas reinhardtii
Kazusa DNA Research Institute