KCC000560A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000560A_C01 KCC000560A_c01
caatgcttccaaatCTCCAGCCTATGTTCTCTGCCCGCCTTAGCTCCCTTCACGCGTCAT
CTGACAACTGCGCTGACAATTGCTTCAGCCGACGGGAACCCCCTCGTGACGCGCACTCGG
CGCGACACTGCCACGTTCATATGATAGTATAGGAAGATGAGTAATTTGAGGGGCTTTGCA
GCGAGCCTTGGAGCTGGGAGAGGTCGAGACTTCCAGCTCCGCGCGCTTTTGCAGCATACG
CTCGCGCTGATTGCCCTCTTGGGCTCGGTTTGCCAAGCGCAAGTGATGAGCAAAAATGGC
GCGGATAACGCAACGCAGCGGAGCCCCGCCGAGGAGCTGAACCACGTCCTGCATTGGGTG
GCGTACCTGCTGATGGCCTGCTCCGCTGGACTGCTGCTAACTTCAGCAGTGGCACTGTTT
CGATGGCCGTATCCAAGCTGCCTGTGCTACAACACTCCCTTTTCAGACTCCGCCATGTGC
CTAGGGTCGCCGTGCTGCGCCTGTGCCAATATACGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000560A_C01 KCC000560A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_315792.1| ENSANGP00000018663 [Anopheles gambiae] gi|21299...    36  0.33
ref|NP_788733.1| multiple ankyrin repeats single KH domain CG331...    35  0.57
gb|AAL65911.1|AF425651_1 multiple ankyrin repeat single KH domai...    35  0.57
gb|AAL68383.1| SD05950p [Drosophila melanogaster]                      35  0.57
gb|AAM11086.1| GH26759p [Drosophila melanogaster]                      35  0.57

>ref|XP_315792.1| ENSANGP00000018663 [Anopheles gambiae] gi|21299754|gb|EAA11899.1|
           ENSANGP00000018663 [Anopheles gambiae str. PEST]
          Length = 944

 Score = 35.8 bits (81), Expect = 0.33
 Identities = 29/121 (23%), Positives = 51/121 (41%), Gaps = 1/121 (0%)
 Frame = -1

Query: 505 HRRSTATLGTWRSLKRECCSTGSLDTAIETVPLLKLAAVQRSRPSAGTPPN-AGRGSAPR 329
           H+R  A  G     K     TG++ ++      L +++   + P +G  P+    GS P 
Sbjct: 2   HKRHVAAAGRKSMEKFPLKGTGNISSSNN----LSISSAATNHPLSGDHPSYQSVGSKPG 57

Query: 328 RGSAALRYPRHFCSSLALGKPSPRGQSARAYAAKARGAGSLDLSQLQGSLQSPSNYSSSY 149
           +GS A    RH  ++      +  G        +A   G +D++   G L +P+   SSY
Sbjct: 58  KGSPASGAERHITTTTTTSLTTAPGTVGAVPVYEADEDGMIDITPGNGGLTNPNYSYSSY 117

Query: 148 T 146
           +
Sbjct: 118 S 118

>ref|NP_788733.1| multiple ankyrin repeats single KH domain CG33106-PA [Drosophila
            melanogaster] gi|28571867|ref|NP_788734.1| multiple
            ankyrin repeats single KH domain CG33106-PB [Drosophila
            melanogaster] gi|28381452|gb|AAO41600.1| CG33106-PA
            [Drosophila melanogaster] gi|28381453|gb|AAO41601.1|
            CG33106-PB [Drosophila melanogaster]
          Length = 4001

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -1

Query: 448  STGSLDTAIETVPLLKLAAVQRSRPSAGTPPNAGR-GSAPRRG--SAALRYPRHFCSSLA 278
            S G +     TVP+ +   +  S P AG PP  G  GS P  G  SAA +      +S  
Sbjct: 3627 SPGVIKPPTATVPIQRHVPMPISAPEAGAPPTFGAIGSNPASGNNSAAAQAAAAAAASAM 3686

Query: 277  LGKPSPRGQSARAYAAKARGAGSLDLSQLQGSLQSPSNYSSSYTI 143
            + +     Q+ +      R  G+    Q Q  L  P + +SS+ +
Sbjct: 3687 IDRQQQNLQNLQTLQNLQRMVGASQQQQPQQQLNYPMDPTSSFIV 3731

>gb|AAL65911.1|AF425651_1 multiple ankyrin repeat single KH domain protein [Drosophila
            melanogaster]
          Length = 4001

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -1

Query: 448  STGSLDTAIETVPLLKLAAVQRSRPSAGTPPNAGR-GSAPRRG--SAALRYPRHFCSSLA 278
            S G +     TVP+ +   +  S P AG PP  G  GS P  G  SAA +      +S  
Sbjct: 3627 SPGVIKPPTATVPIQRHVPMPISAPEAGAPPTFGAIGSNPASGNNSAAAQAAAAAAASAM 3686

Query: 277  LGKPSPRGQSARAYAAKARGAGSLDLSQLQGSLQSPSNYSSSYTI 143
            + +     Q+ +      R  G+    Q Q  L  P + +SS+ +
Sbjct: 3687 IDRQQQNLQNLQTLQNLQRMVGASQQQQPQQQLNYPMDPTSSFIV 3731

>gb|AAL68383.1| SD05950p [Drosophila melanogaster]
          Length = 531

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -1

Query: 448 STGSLDTAIETVPLLKLAAVQRSRPSAGTPPNAGR-GSAPRRG--SAALRYPRHFCSSLA 278
           S G +     TVP+ +   +  S P AG PP  G  GS P  G  SAA +      +S  
Sbjct: 157 SPGVIKPPTATVPIQRHVPMPISAPEAGAPPTFGAIGSNPASGNNSAAAQAAAAAAASAM 216

Query: 277 LGKPSPRGQSARAYAAKARGAGSLDLSQLQGSLQSPSNYSSSYTI 143
           + +     Q+ +      R  G+    Q Q  L  P + +SS+ +
Sbjct: 217 IDRQQQNLQNLQTLQNLQRMVGASQQQQPQQQLNYPMDPTSSFIV 261

>gb|AAM11086.1| GH26759p [Drosophila melanogaster]
          Length = 404

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -1

Query: 448 STGSLDTAIETVPLLKLAAVQRSRPSAGTPPNAGR-GSAPRRG--SAALRYPRHFCSSLA 278
           S G +     TVP+ +   +  S P AG PP  G  GS P  G  SAA +      +S  
Sbjct: 30  SPGVIKPPTATVPIQRHVPMPISAPEAGAPPTFGAIGSNPASGNNSAAAQAAAAAAASAM 89

Query: 277 LGKPSPRGQSARAYAAKARGAGSLDLSQLQGSLQSPSNYSSSYTI 143
           + +     Q+ +      R  G+    Q Q  L  P + +SS+ +
Sbjct: 90  IDRQQQNLQNLQTLQNLQRMVGASQQQQPQQQLNYPMDPTSSFIV 134



EST assemble image


clone accession position
1 LCL085g01_r AV630885 1 245
2 LCL062h04_r AV629658 15 431
3 CL42b12_r AV395508 15 519
4 LCL029f12_r AV627627 26 376
5 HCL076g09_r AV643829 26 134
6 LCL014a11_r AV626708 26 232
7 LCL090e09_r AV631227 26 378
8 LCL097h05_r AV631665 179 318




Chlamydomonas reinhardtii
Kazusa DNA Research Institute