Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000552A_C01 KCC000552A_c01
(1433 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49728|UCRI_CHLRE Cytochrome B6-F complex iron-sulfur subunit... 245 2e-63
sp|Q9SBN3|UCRI_VOLCA Cytochrome B6-F complex iron-sulfur subunit... 234 3e-60
gb|AAC04807.1| cytochrome B6-F complex iron-sulfur subunit precu... 189 1e-46
gb|AAC78103.1| Rieske Fe-S precursor protein [Oryza sativa] 183 8e-45
emb|CAC03598.1| Rieske FeS protein [Arabidopsis thaliana] 181 2e-44
>sp|P49728|UCRI_CHLRE Cytochrome B6-F complex iron-sulfur subunit, chloroplast precursor
(Rieske iron-sulfur protein) (RISP)
gi|541541|pir||A53412 probable plastoquinol-plastocyanin
reductase (EC 1.10.99.1) Rieske iron-sulfur protein -
Chlamydomonas reinhardtii gi|510968|emb|CAA53947.1|
rieske iron-sulfur protein of cytochrome B6/F complex
[Chlamydomonas reinhardtii] gi|2381483|dbj|BAA22147.1|
chloroplast Rieske Fe-S precursor protein [Chlamydomonas
reinhardtii]
Length = 206
Score = 245 bits (625), Expect = 2e-63
Identities = 122/145 (84%), Positives = 124/145 (85%)
Frame = +2
Query: 230 YGAFFVPPSSGWCAAGGQVR*GRSGQRHQGRGSG*RPTWAGDRSLSQGLKGDPTYLIVTA 409
YGAFFVPPSSG GGQ G + G + AGDRSLSQGLKGDPTYLIVTA
Sbjct: 64 YGAFFVPPSSGG-GGGGQAAKDALGNDIKA-GEWLKTHLAGDRSLSQGLKGDPTYLIVTA 121
Query: 410 DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV 589
DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV
Sbjct: 122 DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV 181
Query: 590 AESGLVTFSTWTETDFRTGLEPWWA 664
AESGLVTFSTWTETDFRTGLEPWWA
Sbjct: 182 AESGLVTFSTWTETDFRTGLEPWWA 206
Score = 131 bits (330), Expect = 3e-29
Identities = 76/95 (80%), Positives = 79/95 (83%)
Frame = +3
Query: 39 MAMLSSRRVAAPAKASAIRRSRVMPVVRAAAASSEVPDMNKRNIMNLILAGGAGLPITTL 218
MAMLSSRRVAAPAKASAIRRSRVMPVVRAAAASSEVPDMNKRNIMNLILAGGAGLPITTL
Sbjct: 1 MAMLSSRRVAAPAKASAIRRSRVMPVVRAAAASSEVPDMNKRNIMNLILAGGAGLPITTL 60
Query: 219 ASGPTVPSSCPPALAGVRLVARCAKDALGNDIKAG 323
A G + P +G + AKDALGNDIKAG
Sbjct: 61 ALG--YGAFFVPPSSGGGGGGQAAKDALGNDIKAG 93
>sp|Q9SBN3|UCRI_VOLCA Cytochrome B6-F complex iron-sulfur subunit, chloroplast precursor
(Rieske iron-sulfur protein) (RISP)
gi|5902590|gb|AAD55565.1|AF110783_1 rieske iron-sulfur
protein precursor [Volvox carteri f. nagariensis]
Length = 206
Score = 234 bits (597), Expect = 3e-60
Identities = 117/150 (78%), Positives = 120/150 (80%), Gaps = 5/150 (3%)
Frame = +2
Query: 230 YGAFFVPPSSGWCAAGGQVR*GRSGQRHQGRGSG*RPTWA-----GDRSLSQGLKGDPTY 394
YGAFFVPPSSG +GGQ G + W GDRSLSQGLKGDPTY
Sbjct: 64 YGAFFVPPSSGG-GSGGQAAKDALGNDIKANA------WLATHQKGDRSLSQGLKGDPTY 116
Query: 395 LIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLAL 574
LIVTAD TIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLAL
Sbjct: 117 LIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLAL 176
Query: 575 AHCDVAESGLVTFSTWTETDFRTGLEPWWA 664
AHCDV E GLVTFSTW+ETDFRTGLEPWWA
Sbjct: 177 AHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206
Score = 109 bits (273), Expect = 1e-22
Identities = 63/96 (65%), Positives = 70/96 (72%)
Frame = +3
Query: 39 MAMLSSRRVAAPAKASAIRRSRVMPVVRAAAASSEVPDMNKRNIMNLILAGGAGLPITTL 218
MAM++SRR AAP KA A RRSRVM VVRAAA SSEVPDMNKRNIMNLIL GGA LP+ +L
Sbjct: 1 MAMITSRRAAAPCKAQATRRSRVMSVVRAAAVSSEVPDMNKRNIMNLILLGGASLPVGSL 60
Query: 219 ASGPTVPSSCPPALAGVRLVARCAKDALGNDIKAGA 326
A G + P +G + AKDALGNDIKA A
Sbjct: 61 ALG--YGAFFVPPSSGGGSGGQAAKDALGNDIKANA 94
>gb|AAC04807.1| cytochrome B6-F complex iron-sulfur subunit precursor [Fritillaria
agrestis]
Length = 230
Score = 189 bits (479), Expect = 1e-46
Identities = 91/145 (62%), Positives = 105/145 (71%)
Frame = +2
Query: 230 YGAFFVPPSSGWCAAGGQVR*GRSGQRHQGRGSG*RPTWAGDRSLSQGLKGDPTYLIVTA 409
YGAFFVPPSSG GG V G + + GDR+L+QGL+GDPTYL+V
Sbjct: 88 YGAFFVPPSSGG-GGGGIVAKDAVGNDIVA-AAWLKTHGPGDRTLAQGLRGDPTYLVVEN 145
Query: 410 DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV 589
D ++ YG+NAVCTHLGCVVPW AENKF CPCHGSQYN +GKVVRGPAPLSLAL+HCD+
Sbjct: 146 DRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDI 205
Query: 590 AESGLVTFSTWTETDFRTGLEPWWA 664
+E G V F W ETDFRTG PWW+
Sbjct: 206 SEEGKVVFVPWVETDFRTGENPWWS 230
Score = 41.6 bits (96), Expect = 0.035
Identities = 30/79 (37%), Positives = 38/79 (47%), Gaps = 3/79 (3%)
Frame = +3
Query: 99 SRVMPVVRAAAASSEVPDMNKRNIMNLILAGGAGLPITTLASGPTVPSSC---PPALAGV 269
SR + + + VPDM KR MNL+L G LP +G +P PP+ G
Sbjct: 45 SRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLP----TAGMLIPYGAFFVPPSSGGG 100
Query: 270 RLVARCAKDALGNDIKAGA 326
AKDA+GNDI A A
Sbjct: 101 G-GGIVAKDAVGNDIVAAA 118
>gb|AAC78103.1| Rieske Fe-S precursor protein [Oryza sativa]
Length = 225
Score = 183 bits (464), Expect = 8e-45
Identities = 92/145 (63%), Positives = 103/145 (70%)
Frame = +2
Query: 230 YGAFFVPPSSGWCAAGGQVR*GRSGQRHQGRGSG*RPTWAGDRSLSQGLKGDPTYLIVTA 409
YGAFF+P SG A GGQV + G + DR+L+QGLKGDPTYL+V A
Sbjct: 84 YGAFFIPAGSG-NAGGGQVAKDKLGNDVLAE-EWLKTHGPNDRTLTQGLKGDPTYLVVEA 141
Query: 410 DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV 589
D T+ YG+NAVCTHLGCVVPW AAENKF CPCHGSQYN +G+VVRGPAPLSLAL H DV
Sbjct: 142 DKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADV 201
Query: 590 AESGLVTFSTWTETDFRTGLEPWWA 664
+ G V F W ETDFRTG PWWA
Sbjct: 202 -DDGKVLFVPWVETDFRTGDNPWWA 225
Score = 44.7 bits (104), Expect = 0.004
Identities = 38/104 (36%), Positives = 45/104 (42%), Gaps = 9/104 (8%)
Frame = +3
Query: 36 TMAMLSSRRVAAPAKASAIRRSRV---MPVVRAAAASS----EVPDMNKRNIMNLILAGG 194
T S + P K R RV + AASS VPDM KR +MNL+L G
Sbjct: 13 TQLCRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGA 72
Query: 195 AGLPITTLASGPTVPSSC--PPALAGVRLVARCAKDALGNDIKA 320
LP G VP PA +G + AKD LGND+ A
Sbjct: 73 ISLPTV----GMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLA 112
>emb|CAC03598.1| Rieske FeS protein [Arabidopsis thaliana]
Length = 229
Score = 181 bits (460), Expect = 2e-44
Identities = 86/145 (59%), Positives = 99/145 (67%)
Frame = +2
Query: 230 YGAFFVPPSSGWCAAGGQVR*GRSGQRHQGRGSG*RPTWAGDRSLSQGLKGDPTYLIVTA 409
Y FFVPP +G G + + GDR+L+QGLKGDPTYL+V
Sbjct: 87 YATFFVPPGTGGGGGGTPAKDALGNDVVAAEWL--KTHGPGDRTLTQGLKGDPTYLVVEN 144
Query: 410 DSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDV 589
D T+ YG+NAVCTHLGCVVPW AENKF CPCHGSQYNA+G+VVRGPAPLSLALAH D+
Sbjct: 145 DKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADI 204
Query: 590 AESGLVTFSTWTETDFRTGLEPWWA 664
E+G V F W ETDFRTG PWW+
Sbjct: 205 DEAGKVLFVPWVETDFRTGDAPWWS 229
Score = 41.6 bits (96), Expect = 0.035
Identities = 34/101 (33%), Positives = 46/101 (44%), Gaps = 5/101 (4%)
Frame = +3
Query: 33 STMAMLSSRRVAAPAKAS--AIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGA 197
S + +SS P K + +R+ ++ + A+S VPDM KR +NL+L G
Sbjct: 17 SALMAMSSGLFVKPTKMNHQMVRKEKIGLRIACQASSIPADRVPDMEKRKTLNLLLLGAL 76
Query: 198 GLPITTLASGPTVPSSCPPALAGVRLVARCAKDALGNDIKA 320
LP T P PP G AKDALGND+ A
Sbjct: 77 SLP-TGYMLVPYATFFVPPGTGGGG-GGTPAKDALGNDVVA 115
