Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000547A_C01 KCC000547A_c01
(741 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82688.1| Epa4p [Candida glabrata] 55 1e-06
gb|AAQ82687.1| Epa5p [Candida glabrata] 50 4e-05
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 49 1e-04
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|... 49 1e-04
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 49 1e-04
>gb|AAQ82688.1| Epa4p [Candida glabrata]
Length = 1416
Score = 55.1 bits (131), Expect = 1e-06
Identities = 51/190 (26%), Positives = 83/190 (42%)
Frame = -3
Query: 643 VKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSSRSLANSVLRASSASS*L*DVLT 464
+++V P +QD S+S+P S + SS S ++S +SS+SS +
Sbjct: 315 IRDVCEPLPTPSQDINSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 374
Query: 463 KVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDEFIQQYDDSFSESNDPT 284
P +SSSSSSS+SSS SP S SSS + S S S+ +
Sbjct: 375 PSPS-----SSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 429
Query: 283 SLQVSGADEQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWHGTGEHSSMLPTATAAA 104
S S + ++S S +S SSS + P P+S SS ++++++
Sbjct: 430 SPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSS---------SSSSSSSSSSS 480
Query: 103 NKGLEHSINP 74
+ ++ S P
Sbjct: 481 SPSIQPSSKP 490
Score = 42.4 bits (98), Expect = 0.008
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = -3
Query: 436 ASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDEFIQQYDDSFSESNDPT-SLQVSGAD 260
+SSSSSSS+SSS S S SSS + S S S+ P+ S S +
Sbjct: 344 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSSSSSSS 403
Query: 259 EQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWHGTGEHSSMLPTATAAANKGLEHSI 80
++S S +S SSS + P P+S + SS +++++++ S
Sbjct: 404 SSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 463
Query: 79 NPPAKHDLSGLS 44
+P S S
Sbjct: 464 SPSPSSSSSSSS 475
Score = 41.6 bits (96), Expect = 0.013
Identities = 48/194 (24%), Positives = 79/194 (39%), Gaps = 9/194 (4%)
Frame = -3
Query: 724 SAAICNSESGTFPSPLARRKRSRIDADVKNVAGAKPCSTQDCRIHSTST---PRYSGRMG 554
S++ +S S + PSP + S + + + + S+ S+S+ P S
Sbjct: 381 SSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSS 440
Query: 553 GDA*GPSSRSLANSVLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPG 374
+ SS S ++S +SS+SS + P +SSSSSSS S P P +P
Sbjct: 441 SSSSSSSSSSSSSSSSSSSSSSS------SPSPSSSSSSSSSSSSSSPSIQPSSKPVDPS 494
Query: 373 RSERSSSLFNVEDEFIQQYDDSFSESNDPTSLQVSGADEQDGGNASV------WRSRLHR 212
++ S++ +V + + S S S+ +G +V
Sbjct: 495 PADPSNNPSSVNPSSVNPSSINSSPSIISPSVSTKTVTLSNGSTITVTVTVTPTSPNGGN 554
Query: 211 PNSDSSSIFAEPPP 170
NSDS S F+ PPP
Sbjct: 555 SNSDSDS-FSLPPP 567
Score = 39.3 bits (90), Expect = 0.065
Identities = 46/178 (25%), Positives = 69/178 (37%)
Frame = -3
Query: 724 SAAICNSESGTFPSPLARRKRSRIDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA 545
S++ +S S + S + S + + + P S+ S+S+ S +
Sbjct: 342 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSSSSS 401
Query: 544 *GPSSRSLANSVLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSE 365
SS S ++S +SS+SS + P +SSSSSSS+SSS S S
Sbjct: 402 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP-SSSSSSSSSSSSSSSSSSSSSSSSSSS 460
Query: 364 RSSSLFNVEDEFIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSS 191
SSS S S S P+S V + N S P+S +SS
Sbjct: 461 SSSSPSPSSSSSSSSSSSSSSPSIQPSSKPVDPSPADPSNNPSSVNPSSVNPSSINSS 518
>gb|AAQ82687.1| Epa5p [Candida glabrata]
Length = 1218
Score = 50.1 bits (118), Expect = 4e-05
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 1/180 (0%)
Frame = -3
Query: 643 VKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSSRSLANSVLRASSASS*L*DVLT 464
+++V P +QD S+S+P S + SS S ++S +SS+SS +
Sbjct: 315 IRDVCEPLPTPSQDINSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 374
Query: 463 KVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDEFIQQYDDSFSESNDPT 284
P +SSSSSSS+SSS SP S SSS + S S S+ +
Sbjct: 375 PSPSS----SSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 430
Query: 283 SLQVS-GADEQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWHGTGEHSSMLPTATAA 107
S S ++S S +S SSS + P P+S + SS +++++
Sbjct: 431 SSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSS 490
Score = 48.9 bits (115), Expect = 8e-05
Identities = 46/173 (26%), Positives = 70/173 (39%)
Frame = -3
Query: 709 NSESGTFPSPLARRKRSRIDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSS 530
NS S + PSP + S + + + + S+ S+S+ + SS
Sbjct: 330 NSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSS 389
Query: 529 RSLANSVLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSL 350
S ++S +SS+SS + +SSSSSSS+SSS SP S SSS
Sbjct: 390 SSSSSSPSPSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSS 446
Query: 349 FNVEDEFIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSS 191
+ S S S+ P+ S + ++S S P+S SSS
Sbjct: 447 SSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSPSPSSSSSS 499
Score = 40.4 bits (93), Expect = 0.029
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 6/191 (3%)
Frame = -3
Query: 724 SAAICNSESGTFPSPLARRKRSRIDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA 545
S++ +S S + PSP RS + + + + S+ S+S+P
Sbjct: 422 SSSSSSSSSSSSPSP----SRSSSSSSSSSSSSSSSSSSSSSSSSSSSSP---------- 467
Query: 544 *GPSSRSLANSVLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSE 365
PSS S ++S +SS+SS + P +SSSSSSS S P P +P ++
Sbjct: 468 -SPSSSSSSSSSSSSSSSSS---SSSSPSPSSSSSSSSSSSSSSPSIQPSSKPVDPSPAD 523
Query: 364 RSSSLFNVEDEFIQQYDDSFSESNDPTSLQVSGADEQDGGNASV------WRSRLHRPNS 203
S++ +V + + S S S+ +G +V NS
Sbjct: 524 PSNNPSSVNPSSVNPSSINSSPSIISPSVSTKTVTLSNGSTITVTVTVTPTSPNGGNSNS 583
Query: 202 DSSSIFAEPPP 170
DS S F+ PPP
Sbjct: 584 DSDS-FSLPPP 593
Score = 39.7 bits (91), Expect = 0.050
Identities = 44/183 (24%), Positives = 72/183 (39%)
Frame = -3
Query: 724 SAAICNSESGTFPSPLARRKRSRIDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA 545
S++ +S S + PSP + S + + + P S+ S+S+ S +
Sbjct: 363 SSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSS 422
Query: 544 *GPSSRSLANSVLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSE 365
SS S ++S + S+SS + +SSSSSSS S S S S
Sbjct: 423 SSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSS 482
Query: 364 RSSSLFNVEDEFIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSSIF 185
SSS + S S S+ P+ S + + S S ++ + + SSI
Sbjct: 483 SSSSSSSSPSPSSSSSSSSSSSSSSPSIQPSSKPVDPSPADPSNNPSSVNPSSVNPSSIN 542
Query: 184 AEP 176
+ P
Sbjct: 543 SSP 545
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 48.5 bits (114), Expect = 1e-04
Identities = 58/185 (31%), Positives = 80/185 (42%), Gaps = 3/185 (1%)
Frame = +1
Query: 163 SCSEEAPRKWKRSRCSVCAVATARHSRSRRPARQRQRLAVMLDHLTQRTSRHTAG*THPP 342
S S +P WKRSR S + AT R SRSR P R+R +++R SR T
Sbjct: 1852 SRSRTSPAPWKRSR-SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT--- 1907
Query: 343 R*KARRTSRCALALRGSSAARTM-CWKTTTRTQLAFTGPGPS*ARPIITRTQRRL*ERSS 519
+ R SR + R S +RT + +R++ T P +TR + R R+
Sbjct: 1908 --RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR--SRTP 1963
Query: 520 PRSASWGLTHRRPSFRS--IVEYSSSGCGSLACCRASHRRHSSRRRRSSTAFYAPVARGM 693
P +T RR R+ I S S R S R S RR S + +PV R
Sbjct: 1964 P------VTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRR 2017
Query: 694 SRSQS 708
SRS++
Sbjct: 2018 SRSRT 2022
Score = 43.1 bits (100), Expect = 0.005
Identities = 62/235 (26%), Positives = 85/235 (35%), Gaps = 17/235 (7%)
Frame = -1
Query: 708 TLRAGHSPRHWRVESGRGSTPT*RMSPVRSPAAR----------------KTAASTRRVL 577
T R S R R TP R S RSP R +T A R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSR 659
Query: 576 HDTPEGWAAMR-EAPARAPWRTPFLEPPLRPRDYRTCSRRSRAGKSELRPRRRLPAHRPR 400
TP R PAR R+ P R R RR R+ L R R + P+
Sbjct: 660 SRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQ 719
Query: 399 RRRAPESQGAARGPPRFSTWRMSSSSSMTTRSLSQMIQHHCKSLALTSRTAGTRVSGGRD 220
RR S + R S R S+SS + S++ +SL+ A +R+S R
Sbjct: 720 RRGRSGSSSERKNKSRTSQRRSRSNSSPEMKK-SRISSRRSRSLSSPRSKAKSRLSLRRS 778
Query: 219 CTDRTATPLPFSRSLLRTAGVGTALASILACCRQRRQPQIRGSSTPLIPPPNTTS 55
+ + P S++ R + G++ + RR R SS+ PPP S
Sbjct: 779 LSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRS---RSSSS---PPPKQKS 827
Score = 40.0 bits (92), Expect = 0.038
Identities = 64/233 (27%), Positives = 92/233 (39%), Gaps = 27/233 (11%)
Frame = -1
Query: 660 RGSTPT*RMSPVRSPAARKTAAST----RRVLHDTPEGWAAMREAPARAPWRTPFLEPPL 493
R TPT R S R+PA R + S RR +P + +PAR R+ P
Sbjct: 595 RSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Query: 492 RPRDY-RTCSRRSRA-----GKSELRPRRRLPAHRPRRRRAPESQGAARGPP-------- 355
R R RT +RR R+ + R R R PA R R R +G +R
Sbjct: 655 RGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSH 714
Query: 354 -RFSTWRMSSSSSMTTRSLSQMIQHHCKSLALTSRTAGTRVSGGRDCTDRTATPLPFSRS 178
R R S SS ++ S+ Q +S + + +R+S R + + SR
Sbjct: 715 SRTPQRRGRSGSSSERKNKSRTSQRRSRSNS-SPEMKKSRISSRRSRSLSSPRSKAKSRL 773
Query: 177 LLRTAGVGTALASILACCRQRRQPQIR----GSSTP----LIPPPNTTSLACP 43
LR + G++ C +Q+ Q R GSS P PP + S + P
Sbjct: 774 SLRRSLSGSS-----PCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSP 821
Score = 39.3 bits (90), Expect = 0.065
Identities = 47/189 (24%), Positives = 74/189 (38%), Gaps = 23/189 (12%)
Frame = -1
Query: 675 RVESGRGSTPT*RMSPVRSPAARKTAASTRRVLHDTPEGWAAMREAPARAPW-------- 520
R +SG S+P + R+ R + S+ + +PEG ++ +P P
Sbjct: 1613 RAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGS 1672
Query: 519 ------RTPFLEPPLRPRDYRT---------CSRRSRAGKSELRPRRRLPAHRPRRRRAP 385
+T PP R R R+ SRRSR+ S R R P PR RR+P
Sbjct: 1673 RSSPEPKTKSRTPP-RRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP---PRHRRSP 1728
Query: 384 ESQGAARGPPRFSTWRMSSSSSMTTRSLSQMIQHHCKSLALTSRTAGTRVSGGRDCTDRT 205
S+ R S+SS T++ S+ + + + + G + S R ++T
Sbjct: 1729 SVSSPEPAEKSRSSRRRRSASSPRTKTTSR------RGRSPSPKPRGLQRSRSRSRREKT 1782
Query: 204 ATPLPFSRS 178
T RS
Sbjct: 1783 RTTRRRDRS 1791
Score = 33.9 bits (76), Expect = 2.7
Identities = 39/121 (32%), Positives = 51/121 (41%), Gaps = 7/121 (5%)
Frame = -1
Query: 669 ESGRGSTPT*RMSP-VRSPA-ARKTAASTRRVLHDTPEGWAAMREAPARAPWRTPFLEPP 496
E+ + P R SP V SP A K+ +S RR +P R + +P
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR 1774
Query: 495 LRPR--DYRTCSRRSRAGKSELRPRRRLPAH---RPRRRRAPESQGAARGPPRFSTWRMS 331
R R RT RR R+G S+ RRR + R RRR S +R P R + R S
Sbjct: 1775 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTS 1834
Query: 330 S 328
S
Sbjct: 1835 S 1835
Score = 33.5 bits (75), Expect = 3.6
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 1/183 (0%)
Frame = -1
Query: 621 SPAARKTAASTRRVLH-DTPEGWAAMREAPARAPWRTPFLEPPLRPRDYRTCSRRSRAGK 445
SP +K+ S+RR +P A R + R+ + P + +T RRSR+G
Sbjct: 746 SPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSS----PCPKQKSQTPPRRSRSGS 801
Query: 444 SELRPRRRLPAHRPRRRRAPESQGAARGPPRFSTWRMSSSSSMTTRSLSQMIQHHCKSLA 265
S+ + + R P R R +P + ++ P R S SSS + S+
Sbjct: 802 SQPKAKSRTPPRRSRSSSSPPPKQKSKTPS-----RQSHSSSSPHPKVKSGTPPRQGSIT 856
Query: 264 LTSRTAGTRVSGGRDCTDRTATPLPFSRSLLRTAGVGTALASILACCRQRRQPQIRGSST 85
+ R C + + P SR+ R + G++ + + R+ P S
Sbjct: 857 SPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ 916
Query: 84 PLI 76
P +
Sbjct: 917 PKV 919
Score = 33.5 bits (75), Expect = 3.6
Identities = 47/206 (22%), Positives = 84/206 (39%), Gaps = 1/206 (0%)
Frame = -3
Query: 688 PSPLARRKRSR-IDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSSRSLANS 512
P P A +SR + A VAG++ S+ ++S ++G + A G +
Sbjct: 2450 PVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEP 2509
Query: 511 VLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDE 332
AS+ + + P + +R +SSSSSSS+SSS S S SSS +
Sbjct: 2510 P--ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Query: 331 FIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWH 152
Q + + PT ++G ++ R +S SSS + +S
Sbjct: 2568 LPVQPEVALKRVPSPTPAPKEAV--REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSS 2625
Query: 151 GTGEHSSMLPTATAAANKGLEHSINP 74
+ SS +++++++ S +P
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Score = 32.3 bits (72), Expect = 8.0
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 6/212 (2%)
Frame = -1
Query: 690 SPRHWRVESGRGSTPT*RMSPVRSPAARKTAAST---RRVLHDTPEGWAAMREAPARAPW 520
SP+ +V S+P P +P + + +S+ + H + + P+R
Sbjct: 424 SPQPTKVSRHASSSPE-SPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMG 482
Query: 519 RTPFLEPPLRPRDY-RTCSRRSRAGKSELRPRRRLPAHRPRRRRAPESQGAARGPPRFST 343
R+ R R RT ++R + + RR A R R R+P+ +G +R P R
Sbjct: 483 RSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR-PG 541
Query: 342 WRMSSSSSMTTRSLS-QMIQHHCKSLALTSRTAGTRVSGGRDCTDRTATPLPFSRSLLRT 166
W S ++ RS S + + H +S A R+ R+ TP RS RT
Sbjct: 542 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRS-------------RSRTPARRGRSRSRT 588
Query: 165 AGVGTALASILACCRQR-RQPQIRGSSTPLIP 73
+ + R R R P RG S P
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTP 620
>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
Length = 1791
Score = 48.5 bits (114), Expect = 1e-04
Identities = 58/185 (31%), Positives = 80/185 (42%), Gaps = 3/185 (1%)
Frame = +1
Query: 163 SCSEEAPRKWKRSRCSVCAVATARHSRSRRPARQRQRLAVMLDHLTQRTSRHTAG*THPP 342
S S +P WKRSR S + AT R SRSR P R+R +++R SR T
Sbjct: 884 SRSRTSPAPWKRSR-SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT--- 939
Query: 343 R*KARRTSRCALALRGSSAARTM-CWKTTTRTQLAFTGPGPS*ARPIITRTQRRL*ERSS 519
+ R SR + R S +RT + +R++ T P +TR + R R+
Sbjct: 940 --RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR--SRTP 995
Query: 520 PRSASWGLTHRRPSFRS--IVEYSSSGCGSLACCRASHRRHSSRRRRSSTAFYAPVARGM 693
P +T RR R+ I S S R S R S RR S + +PV R
Sbjct: 996 P------VTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRR 1049
Query: 694 SRSQS 708
SRS++
Sbjct: 1050 SRSRT 1054
Score = 39.3 bits (90), Expect = 0.065
Identities = 47/189 (24%), Positives = 74/189 (38%), Gaps = 23/189 (12%)
Frame = -1
Query: 675 RVESGRGSTPT*RMSPVRSPAARKTAASTRRVLHDTPEGWAAMREAPARAPW-------- 520
R +SG S+P + R+ R + S+ + +PEG ++ +P P
Sbjct: 645 RAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGS 704
Query: 519 ------RTPFLEPPLRPRDYRT---------CSRRSRAGKSELRPRRRLPAHRPRRRRAP 385
+T PP R R R+ SRRSR+ S R R P PR RR+P
Sbjct: 705 RSSPEPKTKSRTPP-RRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP---PRHRRSP 760
Query: 384 ESQGAARGPPRFSTWRMSSSSSMTTRSLSQMIQHHCKSLALTSRTAGTRVSGGRDCTDRT 205
S+ R S+SS T++ S+ + + + + G + S R ++T
Sbjct: 761 SVSSPEPAEKSRSSRRRRSASSPRTKTTSR------RGRSPSPKPRGLQRSRSRSRREKT 814
Query: 204 ATPLPFSRS 178
T RS
Sbjct: 815 RTTRRRDRS 823
Score = 33.9 bits (76), Expect = 2.7
Identities = 39/121 (32%), Positives = 51/121 (41%), Gaps = 7/121 (5%)
Frame = -1
Query: 669 ESGRGSTPT*RMSP-VRSPA-ARKTAASTRRVLHDTPEGWAAMREAPARAPWRTPFLEPP 496
E+ + P R SP V SP A K+ +S RR +P R + +P
Sbjct: 747 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR 806
Query: 495 LRPR--DYRTCSRRSRAGKSELRPRRRLPAH---RPRRRRAPESQGAARGPPRFSTWRMS 331
R R RT RR R+G S+ RRR + R RRR S +R P R + R S
Sbjct: 807 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTS 866
Query: 330 S 328
S
Sbjct: 867 S 867
Score = 33.5 bits (75), Expect = 3.6
Identities = 47/206 (22%), Positives = 84/206 (39%), Gaps = 1/206 (0%)
Frame = -3
Query: 688 PSPLARRKRSR-IDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSSRSLANS 512
P P A +SR + A VAG++ S+ ++S ++G + A G +
Sbjct: 1482 PVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEP 1541
Query: 511 VLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDE 332
AS+ + + P + +R +SSSSSSS+SSS S S SSS +
Sbjct: 1542 P--ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 1599
Query: 331 FIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWH 152
Q + + PT ++G ++ R +S SSS + +S
Sbjct: 1600 LPVQPEVALKRVPSPTPAPKEAV--REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSS 1657
Query: 151 GTGEHSSMLPTATAAANKGLEHSINP 74
+ SS +++++++ S +P
Sbjct: 1658 SSSSSSSSSSSSSSSSSSSSSSSPSP 1683
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 48.5 bits (114), Expect = 1e-04
Identities = 58/185 (31%), Positives = 80/185 (42%), Gaps = 3/185 (1%)
Frame = +1
Query: 163 SCSEEAPRKWKRSRCSVCAVATARHSRSRRPARQRQRLAVMLDHLTQRTSRHTAG*THPP 342
S S +P WKRSR S + AT R SRSR P R+R +++R SR T
Sbjct: 375 SRSRTSPAPWKRSR-SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT--- 430
Query: 343 R*KARRTSRCALALRGSSAARTM-CWKTTTRTQLAFTGPGPS*ARPIITRTQRRL*ERSS 519
+ R SR + R S +RT + +R++ T P +TR + R R+
Sbjct: 431 --RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR--SRTP 486
Query: 520 PRSASWGLTHRRPSFRS--IVEYSSSGCGSLACCRASHRRHSSRRRRSSTAFYAPVARGM 693
P +T RR R+ I S S R S R S RR S + +PV R
Sbjct: 487 P------VTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRR 540
Query: 694 SRSQS 708
SRS++
Sbjct: 541 SRSRT 545
Score = 39.3 bits (90), Expect = 0.065
Identities = 47/189 (24%), Positives = 74/189 (38%), Gaps = 23/189 (12%)
Frame = -1
Query: 675 RVESGRGSTPT*RMSPVRSPAARKTAASTRRVLHDTPEGWAAMREAPARAPW-------- 520
R +SG S+P + R+ R + S+ + +PEG ++ +P P
Sbjct: 136 RAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGS 195
Query: 519 ------RTPFLEPPLRPRDYRT---------CSRRSRAGKSELRPRRRLPAHRPRRRRAP 385
+T PP R R R+ SRRSR+ S R R P PR RR+P
Sbjct: 196 RSSPEPKTKSRTPP-RRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP---PRHRRSP 251
Query: 384 ESQGAARGPPRFSTWRMSSSSSMTTRSLSQMIQHHCKSLALTSRTAGTRVSGGRDCTDRT 205
S+ R S+SS T++ S+ + + + + G + S R ++T
Sbjct: 252 SVSSPEPAEKSRSSRRRRSASSPRTKTTSR------RGRSPSPKPRGLQRSRSRSRREKT 305
Query: 204 ATPLPFSRS 178
T RS
Sbjct: 306 RTTRRRDRS 314
Score = 33.9 bits (76), Expect = 2.7
Identities = 39/121 (32%), Positives = 51/121 (41%), Gaps = 7/121 (5%)
Frame = -1
Query: 669 ESGRGSTPT*RMSP-VRSPA-ARKTAASTRRVLHDTPEGWAAMREAPARAPWRTPFLEPP 496
E+ + P R SP V SP A K+ +S RR +P R + +P
Sbjct: 238 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR 297
Query: 495 LRPR--DYRTCSRRSRAGKSELRPRRRLPAH---RPRRRRAPESQGAARGPPRFSTWRMS 331
R R RT RR R+G S+ RRR + R RRR S +R P R + R S
Sbjct: 298 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTS 357
Query: 330 S 328
S
Sbjct: 358 S 358
Score = 33.5 bits (75), Expect = 3.6
Identities = 47/206 (22%), Positives = 84/206 (39%), Gaps = 1/206 (0%)
Frame = -3
Query: 688 PSPLARRKRSR-IDADVKNVAGAKPCSTQDCRIHSTSTPRYSGRMGGDA*GPSSRSLANS 512
P P A +SR + A VAG++ S+ ++S ++G + A G +
Sbjct: 973 PVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEP 1032
Query: 511 VLRASSASS*L*DVLTKVPGR*KRVASSSSSSSTSSSPQKSPGEPGRSERSSSLFNVEDE 332
AS+ + + P + +R +SSSSSSS+SSS S S SSS +
Sbjct: 1033 P--ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 1090
Query: 331 FIQQYDDSFSESNDPTSLQVSGADEQDGGNASVWRSRLHRPNSDSSSIFAEPPPNSWRWH 152
Q + + PT ++G ++ R +S SSS + +S
Sbjct: 1091 LPVQPEVALKRVPSPTPAPKEAV--REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSS 1148
Query: 151 GTGEHSSMLPTATAAANKGLEHSINP 74
+ SS +++++++ S +P
Sbjct: 1149 SSSSSSSSSSSSSSSSSSSSSSSPSP 1174
