Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000542A_C01 KCC000542A_c01
(540 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA qual... 87 1e-16
gb|AAH52380.1| Unknown (protein for IMAGE:5697399) [Mus musculus] 83 3e-15
gb|AAH51974.1| 60kD Ro/SSA autoantigen [Mus musculus] 83 3e-15
ref|NP_038863.1| 60kD Ro/SSA autoantigen [Mus musculus] gi|12643... 83 3e-15
gb|AAL77518.1|L81154_1 ribonucleoprotein [Mus musculus] 83 3e-15
>ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA quality control
checkpoint (72.8 kD) (rop-1) [Caenorhabditis elegans]
gi|12643738|sp|Q27274|RO60_CAEEL 60-kDa SS-A/Ro
ribonucleoprotein homolog gi|7511637|pir||T19225 Ro
autoantigen 60K homolog - Caenorhabditis elegans
gi|784872|gb|AAC41575.1| Ro ribonucleoprotein
autoantigen gi|905359|gb|AAA96949.1| ribonucleoprotein
Ro autoantigen homolog gi|3874263|emb|CAA98241.1| C.
elegans ROP-1 protein (corresponding sequence C12D8.11)
[Caenorhabditis elegans] gi|3880715|emb|CAA16325.1| C.
elegans ROP-1 protein (corresponding sequence C12D8.11)
[Caenorhabditis elegans] gi|1586552|prf||2204248A 60kD
Ro autoantigen
Length = 643
Score = 87.0 bits (214), Expect = 1e-16
Identities = 43/95 (45%), Positives = 62/95 (65%)
Frame = +2
Query: 254 QSEPLSEDQVLNNAGGFVFKVDDFTLLRRFIILGSDANNYYVSRKSVDLASAQCVVRLLA 433
Q E + + QV NNAGGFVF V D T +RRF+ILGSD +Y+ S + + + +AQ +++++
Sbjct: 54 QMEKVKDGQVENNAGGFVFPVSDETQVRRFLILGSDKGSYHQSSEKITIDNAQRIIKIIE 113
Query: 434 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCAR 538
G G V+KE+ I+ E R PK I LA+CAR
Sbjct: 114 QGNGHMVLKELALINAENRNPKMNAMIFTLAICAR 148
>gb|AAH52380.1| Unknown (protein for IMAGE:5697399) [Mus musculus]
Length = 547
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/95 (40%), Positives = 62/95 (65%)
Frame = +2
Query: 254 QSEPLSEDQVLNNAGGFVFKVDDFTLLRRFIILGSDANNYYVSRKSVDLASAQCVVRLLA 433
Q +PLSE QV+N+ GG V++V D LRRF+ GS+ YY+ + + L +A+ ++RL+
Sbjct: 16 QLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGLENAEALIRLIE 75
Query: 434 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCAR 538
G+G V++E+ S+EGR KQ + LA+C++
Sbjct: 76 DGRGCEVIQEIKSFSQEGRTAKQEPLLFALAVCSQ 110
>gb|AAH51974.1| 60kD Ro/SSA autoantigen [Mus musculus]
Length = 538
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/95 (40%), Positives = 62/95 (65%)
Frame = +2
Query: 254 QSEPLSEDQVLNNAGGFVFKVDDFTLLRRFIILGSDANNYYVSRKSVDLASAQCVVRLLA 433
Q +PLSE QV+N+ GG V++V D LRRF+ GS+ YY+ + + L +A+ ++RL+
Sbjct: 7 QLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGLENAEALIRLIE 66
Query: 434 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCAR 538
G+G V++E+ S+EGR KQ + LA+C++
Sbjct: 67 DGRGCEVIQEIKSFSQEGRTAKQEPLLFALAVCSQ 101
>ref|NP_038863.1| 60kD Ro/SSA autoantigen [Mus musculus]
gi|12643534|sp|O08848|RO60_MOUSE 60-kDa SS-A/Ro
ribonucleoprotein (60 kDa Ro protein) (60 kDa
ribonucleoprotein Ro) (RoRNP) gi|1946306|gb|AAC53142.1|
Mus musculus 60kDa SS-A/Ro
Length = 538
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/95 (40%), Positives = 62/95 (65%)
Frame = +2
Query: 254 QSEPLSEDQVLNNAGGFVFKVDDFTLLRRFIILGSDANNYYVSRKSVDLASAQCVVRLLA 433
Q +PLSE QV+N+ GG V++V D LRRF+ GS+ YY+ + + L +A+ ++RL+
Sbjct: 7 QLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGLENAEALIRLIE 66
Query: 434 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCAR 538
G+G V++E+ S+EGR KQ + LA+C++
Sbjct: 67 DGRGCEVIQEIKSFSQEGRTAKQEPLLFALAVCSQ 101
>gb|AAL77518.1|L81154_1 ribonucleoprotein [Mus musculus]
Length = 538
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/95 (40%), Positives = 62/95 (65%)
Frame = +2
Query: 254 QSEPLSEDQVLNNAGGFVFKVDDFTLLRRFIILGSDANNYYVSRKSVDLASAQCVVRLLA 433
Q +PLSE QV+N+ GG V++V D LRRF+ GS+ YY+ + + L +A+ ++RL+
Sbjct: 7 QLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGLENAEALIRLIE 66
Query: 434 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCAR 538
G+G V++E+ S+EGR KQ + LA+C++
Sbjct: 67 DGRGCEVIQEIKSFSQEGRTAKQEPLLFALAVCSQ 101
