KCC000538A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000538A_C01 KCC000538A_c01
GACGAGTGTCCAGCTAGGAGGAGCGTATCCACACATTACATTTAGGTCTTAAGAGTAGGC
AAAATGGCTTACCAGAGTGGTCAGTATGTCCCTCCGCATCTCCGGGGTATGGCTATGGGG
GCGCCTCCTCCCCCGCCTCCGGGTGGTCCGGGGCCTGTGATGGGCGGCTACGGCGGCTTC
CCTGTCGCCGGCGCGGGCGCGGCTGTTCCGGGTGCTGCACCTTTTGGCGATGATCGCGGT
CCTCGCGGCGGCTATGGCGGGGGCTATGGTGCTCCTCGCGGTGGCTATGGCCGGTGGTGG
CTACGGTGGTGGTGGTCGTGGTGGCTTTGGTGGCGAGCGCGGTGGCTACGCGGGCCGCGG
TGGTGCTGGTCGCGGCGAGGGAGGCATCGGCTTCAACCGGCCCTATGACGATCCTTTCAA
GAAGGCTGAGGCGGAAAAGGCGGAGATCGATGCGCTCTACGGCGCTGAGAACACGGGTAT
TAACTTCGAGGCTTATGAGGATATTCCCGTGGAGACCAGCGGCAAGGACGTGCCGCCGCC
GGTGCACAGCTTCGAGGACCTCCAGCTGCCTGCGTGCATGATGGAGAACATCAAGCGCTG
CAAGTTCACCAAGCCCACGCCCGTGCAGAAGCACTCGATTACCATTGGTCTGGCTGGTCG
CGACCTGATGGCTTGCGCCCAGACCGGCTCGGGCAAGACCGCCGCGTTCTGCTTCCCCAT
CATCGCGTCCATGCTCATGAAGGGCTACCAGCCCGCGGCCGGCCGCAACAGCCGCAAGGC
GCTGCCTGGCGCCCTGGTGCTGGCTCCCACCCGTGAGCTGACCAGCCAGATTTACGACGA
GGCCCGCAAGTTCACGTACATGACGGGCCTGCGCCCCGTGGTCATCTATGGTGGCGCCCC
CGCGCCCAACCAGCTGCGTGACCTGGAGCGCGGCTGCGACATCCTGGTCGCCACGCCCGG
CCGCCTGAGCGACTTCATTGAGCGCGGCCGCGTGGGCCTGTCCTCCATCGTGTTCCTGTG
CCTGGACGAGGCGGACCGCATGCTGGACATGGGCTTCGAGCCCCAGATCCGCCGCATCGT
GGAGCAGGAGGACATGCCGCCCGTGGGCCACCGCCAGACGCTGATGTTCAGCGCCACCTT
CCCCAAGGAGATCCAGCGCCTGGCCTCCGACTTCCTGGCCAACTACGTCTTCCTGACGGT
GGGCCGCGTGGGCTCCTCCACCGACCTGATCGTGCAGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000538A_C01 KCC000538A_c01
(1238 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3(i|6753620) ... 408 e-112
ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis th... 380 e-104
gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis ... 379 e-104
ref|NP_567067.1| DEAD box RNA helicase, putative [Arabidopsis th... 378 e-103
pir||T45671 ATP-dependent RNA helicase-like protein - Arabidopsi... 378 e-103
>dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3(i|6753620) [Oryza sativa
(japonica cultivar-group)]
Length = 638
Score = 408 bits (1048), Expect = e-112
Identities = 228/389 (58%), Positives = 270/389 (68%), Gaps = 31/389 (7%)
Frame = +2
Query: 164 AATAASLSPARARLFRVL----HLLAMIAVLAAAMAGAMVLLAVA---------MAGG-- 298
+A AA+ + +RL R HL A A A AGA+ A A + GG
Sbjct: 15 SAPAAAANHGNSRLPRSSYVPPHLRGQAAPAAPAQAGALPSAAAAAQPSVGQPGVVGGPR 74
Query: 299 ------GYGGGGRGGFGGERGGYA--GRGGAGRGEGGIGFNRP--------YDDPFKKAE 430
G GGGG G GG R G+ GRGG G G GG +RP DPF +E
Sbjct: 75 WAGIVNGGGGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWNSRPGGWDRRDREPDPFANSE 134
Query: 431 AEKAEIDALYGAENTGINFEAYEDIPVETSGKDVPPPVHSFEDLQLPACMMENIKRCKFT 610
A AE+D + ENTGINFEAYEDIPVETSG DVPPP ++F ++ L + ENI+RCK+
Sbjct: 135 A--AEVD--FEGENTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENIRRCKYV 190
Query: 611 KPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNSRKALPG 790
KPTPVQ+++I I +AGRDLMACAQTGSGKTAAFCFPII+ +M+ P R SR A P
Sbjct: 191 KPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG-IMRSRPPPRSRGSRTAYPL 249
Query: 791 ALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGRLS 970
AL+L+PTREL+ QI++EARKF Y TG++ VV YGGAP QLR+LERG +ILVATPGRL
Sbjct: 250 ALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLM 309
Query: 971 DFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGHRQTLMFSATFPKE 1150
D +ER RV L I +L LDEADRMLDMGFEPQIR+IVEQ DMPP G RQT++FSATFPKE
Sbjct: 310 DLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKE 369
Query: 1151 IQRLASDFLANYVFLTVGRVGSSTDLIVQ 1237
IQR+ASDFLA+Y+FL VGRVGSSTDLIVQ
Sbjct: 370 IQRMASDFLADYIFLAVGRVGSSTDLIVQ 398
Score = 44.7 bits (104), Expect(2) = 2e-04
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = +2
Query: 293 GGGYGGGGRGGFGGERGGYAGRGGAG-------RGEGGIGFNRPYD 409
GGGYGGGG GG+GG GGY G GG G G GG GF+ +D
Sbjct: 596 GGGYGGGG-GGYGG--GGYGGGGGGGGYGGGSSYGGGGQGFSSAWD 638
Score = 42.0 bits (97), Expect = 0.022
Identities = 29/78 (37%), Positives = 30/78 (38%)
Frame = +1
Query: 58 GKMAYQSGQYVPPHLRGMAMGAPPPPPPGGPGPVMGGYGGFPVAGAGAAVPGAAPFGDDR 237
G YVPPHLRG A AP P G P P G V G G
Sbjct: 24 GNSRLPRSSYVPPHLRGQA--APAAPAQAGALP-SAAAAAQPSVGQPGVVGGPRWAGIVN 80
Query: 238 GPRGGYGGGYGAPRGGYG 291
G GG GG G R G+G
Sbjct: 81 GGGGGGGGSVGGSRQGFG 98
Score = 36.6 bits (83), Expect = 0.93
Identities = 18/34 (52%), Positives = 19/34 (54%), Gaps = 1/34 (2%)
Frame = +2
Query: 308 GGGRGGFGGERGGYAGRG-GAGRGEGGIGFNRPY 406
G G GG+GG GGY G G G G G GG G Y
Sbjct: 593 GSGGGGYGGGGGGYGGGGYGGGGGGGGYGGGSSY 626
Score = 23.9 bits (50), Expect(2) = 2e-04
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 69 LPEWSVCPSASPGYGYGGASSPASGWSGACDGRLRRLPCRRRGRGCSG 212
+P+W +A +G GG + SG GR R R RG G G
Sbjct: 554 VPQWLERYAARSSFGGGGGRNRRSGGGARFGGRDFR---RDRGSGGGG 598
>ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
gi|25290840|pir||H84854 probable ATP-dependent RNA
helicase [imported] - Arabidopsis thaliana
gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA
helicase [Arabidopsis thaliana]
Length = 633
Score = 380 bits (975), Expect = e-104
Identities = 200/326 (61%), Positives = 240/326 (73%), Gaps = 8/326 (2%)
Frame = +2
Query: 284 AMAGGGYGGGGRGGFGGERG------GYAGRGGAGRGEGGIGFNRPYDD--PFKKAEAEK 439
A G G G GG GG+ + G GY GRGG G G++R + PF+ ++E
Sbjct: 66 APGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFENDDSEP 125
Query: 440 AEIDALYGAENTGINFEAYEDIPVETSGKDVPPPVHSFEDLQLPACMMENIKRCKFTKPT 619
A +NT INF+AYEDIP+ETSG +VPPPV++F ++ L + NI+RCK+ KPT
Sbjct: 126 EP--AFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPT 183
Query: 620 PVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNSRKALPGALV 799
PVQ+H+I I L GRDLMACAQTGSGKTAAFCFPII+ +MK R SR P A++
Sbjct: 184 PVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG-IMKDQHVQRPRGSRTVYPLAVI 242
Query: 800 LAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGRLSDFI 979
L+PTREL SQI+DEA+KF+Y TG++ VV YGG P QLR+LERG DILVATPGRL+D +
Sbjct: 243 LSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL 302
Query: 980 ERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGHRQTLMFSATFPKEIQR 1159
ER RV + I FL LDEADRMLDMGFEPQIR+IVEQ DMPP G RQTL+FSATFP+EIQR
Sbjct: 303 ERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQR 362
Query: 1160 LASDFLANYVFLTVGRVGSSTDLIVQ 1237
LA+DFLANY+FL VGRVGSSTDLIVQ
Sbjct: 363 LAADFLANYIFLAVGRVGSSTDLIVQ 388
Score = 41.6 bits (96), Expect = 0.029
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = +2
Query: 293 GGGYGGGGRGGFGGERGGYAGRGGAGRGEGG 385
GGGYGGG GG+GG GGY G GG G G GG
Sbjct: 591 GGGYGGG--GGYGG-GGGYGGGGGYGGGYGG 618
Score = 40.4 bits (93), Expect = 0.065
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 GGPGPVMGGYGGFPVAGAGAAVPGAAPFGDDRGPRGGYGGGY-GAPRGGYG 291
G G GGYGG G G G G G GGYGGGY GA GGYG
Sbjct: 578 GSFGSGRGGYGG---GGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGYG 625
Score = 40.0 bits (92), Expect = 0.085
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = +2
Query: 296 GGYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
GGYGGGG GG+GG GGY G GG G G GG G
Sbjct: 585 GGYGGGG-GGYGG-GGGYGGGGGYG-GGGGYG 613
Score = 39.3 bits (90), Expect = 0.14
Identities = 31/89 (34%), Positives = 37/89 (40%), Gaps = 19/89 (21%)
Frame = +1
Query: 85 YVPPHLRGMAMGAPPPPP-------------------PGGPGPVMGGYGGFPVAGAGAAV 207
YVPPHLR + P P PGG G +GG GG+ A A
Sbjct: 30 YVPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWAPGGSGVGVGGGGGYR---ADAGR 86
Query: 208 PGAAPFGDDRGPRGGYGGGYGAPRGGYGR 294
PG+ G G RGG GG+ GG+ R
Sbjct: 87 PGS---GSGYGGRGG--GGWNNRSGGWDR 110
Score = 38.9 bits (89), Expect = 0.19
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +2
Query: 299 GYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
G G GRGG+GG GGY G GG G G GG G
Sbjct: 578 GSFGSGRGGYGGGGGGYGGGGGYG-GGGGYG 607
Score = 37.7 bits (86), Expect = 0.42
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 293 GGGYGGGGR-GGFGGERGGYAGRGGAGRG 376
GGGYGGGG GG GG GGY G G G
Sbjct: 597 GGGYGGGGGYGGGGGYGGGYGGASSGGYG 625
Score = 35.8 bits (81), Expect = 1.6
Identities = 18/37 (48%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = +2
Query: 290 AGGGYGGGG---RGGFGGERGGYAGRGGAGRGEGGIG 391
+GG +GG G FG RGGY G GG G GG G
Sbjct: 565 SGGRFGGRDFRREGSFGSGRGGYGGGGGGYGGGGGYG 601
>gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
Length = 633
Score = 379 bits (972), Expect = e-104
Identities = 199/326 (61%), Positives = 240/326 (73%), Gaps = 8/326 (2%)
Frame = +2
Query: 284 AMAGGGYGGGGRGGFGGERG------GYAGRGGAGRGEGGIGFNRPYDD--PFKKAEAEK 439
A G G G GG GG+ + G GY GRGG G G++R + PF+ ++E
Sbjct: 66 APGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFENDDSEP 125
Query: 440 AEIDALYGAENTGINFEAYEDIPVETSGKDVPPPVHSFEDLQLPACMMENIKRCKFTKPT 619
A +NT INF+AYEDIP+ETSG +VPPPV++F ++ L + NI+RCK+ KPT
Sbjct: 126 EP--AFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPT 183
Query: 620 PVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNSRKALPGALV 799
PVQ+H+I I L GRDLMACAQTGSGKTAAFCFPII+ +MK R SR P A++
Sbjct: 184 PVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG-IMKDQHVQRPRGSRTVYPLAVI 242
Query: 800 LAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGRLSDFI 979
L+PTREL SQI+DEA++F+Y TG++ VV YGG P QLR+LERG DILVATPGRL+D +
Sbjct: 243 LSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL 302
Query: 980 ERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGHRQTLMFSATFPKEIQR 1159
ER RV + I FL LDEADRMLDMGFEPQIR+IVEQ DMPP G RQTL+FSATFP+EIQR
Sbjct: 303 ERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQR 362
Query: 1160 LASDFLANYVFLTVGRVGSSTDLIVQ 1237
LA+DFLANY+FL VGRVGSSTDLIVQ
Sbjct: 363 LAADFLANYIFLAVGRVGSSTDLIVQ 388
Score = 41.6 bits (96), Expect = 0.029
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = +2
Query: 293 GGGYGGGGRGGFGGERGGYAGRGGAGRGEGG 385
GGGYGGG GG+GG GGY G GG G G GG
Sbjct: 591 GGGYGGG--GGYGG-GGGYGGGGGYGGGYGG 618
Score = 40.4 bits (93), Expect = 0.065
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 GGPGPVMGGYGGFPVAGAGAAVPGAAPFGDDRGPRGGYGGGY-GAPRGGYG 291
G G GGYGG G G G G G GGYGGGY GA GGYG
Sbjct: 578 GSFGSGRGGYGG---GGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGYG 625
Score = 40.0 bits (92), Expect = 0.085
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = +2
Query: 296 GGYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
GGYGGGG GG+GG GGY G GG G G GG G
Sbjct: 585 GGYGGGG-GGYGG-GGGYGGGGGYG-GGGGYG 613
Score = 39.3 bits (90), Expect = 0.14
Identities = 31/89 (34%), Positives = 37/89 (40%), Gaps = 19/89 (21%)
Frame = +1
Query: 85 YVPPHLRGMAMGAPPPPP-------------------PGGPGPVMGGYGGFPVAGAGAAV 207
YVPPHLR + P P PGG G +GG GG+ A A
Sbjct: 30 YVPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWAPGGSGVGVGGGGGYR---ADAGR 86
Query: 208 PGAAPFGDDRGPRGGYGGGYGAPRGGYGR 294
PG+ G G RGG GG+ GG+ R
Sbjct: 87 PGS---GSGYGGRGG--GGWNNRSGGWDR 110
Score = 38.9 bits (89), Expect = 0.19
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +2
Query: 299 GYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
G G GRGG+GG GGY G GG G G GG G
Sbjct: 578 GSFGSGRGGYGGGGGGYGGGGGYG-GGGGYG 607
Score = 37.7 bits (86), Expect = 0.42
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 293 GGGYGGGGR-GGFGGERGGYAGRGGAGRG 376
GGGYGGGG GG GG GGY G G G
Sbjct: 597 GGGYGGGGGYGGGGGYGGGYGGASSGGYG 625
Score = 35.8 bits (81), Expect = 1.6
Identities = 18/37 (48%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = +2
Query: 290 AGGGYGGGG---RGGFGGERGGYAGRGGAGRGEGGIG 391
+GG +GG G FG RGGY G GG G GG G
Sbjct: 565 SGGRFGGRDFRREGSFGSGRGGYGGGGGGYGGGGGYG 601
>ref|NP_567067.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
gi|21593670|gb|AAM65637.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 612
Score = 378 bits (971), Expect = e-103
Identities = 199/319 (62%), Positives = 238/319 (74%), Gaps = 3/319 (0%)
Frame = +2
Query: 290 AGGGY-GGGGRGGFG-GERGGYAGRGGAGRGEGGIGFNRPYDDPFKKAEAEKAEIDALY- 460
+GGGY GGR G+G G GG G GG GG +PF + AE++ ++
Sbjct: 67 SGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGGWDRREREVNPF----GDDAELEPVFT 122
Query: 461 GAENTGINFEAYEDIPVETSGKDVPPPVHSFEDLQLPACMMENIKRCKFTKPTPVQKHSI 640
ENTGINF+AYEDIPVETSG DVPPPV++F D+ L + NI+RCK+ +PTPVQ+H+I
Sbjct: 123 EQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAI 182
Query: 641 TIGLAGRDLMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNSRKALPGALVLAPTREL 820
I LA RDLMACAQTGSGKTAAFCFPII S +MK R SR P A++L+PTREL
Sbjct: 183 PILLAERDLMACAQTGSGKTAAFCFPII-SGIMKDQHVERPRGSRAVYPFAVILSPTREL 241
Query: 821 TSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGRLSDFIERGRVGL 1000
QI+DEA+KF+Y TG++ VV YGG P QLR+LERGCDILVATPGRL+D +ER RV +
Sbjct: 242 ACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSM 301
Query: 1001 SSIVFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGHRQTLMFSATFPKEIQRLASDFLA 1180
I FL LDEADRMLDMGFEPQIR+IVEQ DMPP G RQT++FSATFP +IQRLA+DF++
Sbjct: 302 QMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS 361
Query: 1181 NYVFLTVGRVGSSTDLIVQ 1237
NY+FL VGRVGSSTDLI Q
Sbjct: 362 NYIFLAVGRVGSSTDLITQ 380
Score = 42.4 bits (98), Expect = 0.017
Identities = 35/79 (44%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +1
Query: 85 YVPPHLRGMAMGAPPPPPPGGPGPVM--GGYGGFPVAGAGAAVP----GAAPFGDDR--G 240
YVPPHLR P P P P GYGG P AG+ A P G A G R G
Sbjct: 22 YVPPHLRNR-----PSEPVAAPLPQNDHAGYGGQP-AGSRWAPPSSGGGGASGGGYRNDG 75
Query: 241 PRGGYGGGYGAPRGGYGRW 297
R GYG G G GG G W
Sbjct: 76 GRTGYGYGAGGGGGGGGGW 94
Score = 36.2 bits (82), Expect = 1.2
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 293 GGGYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
GGG GGGG +GG GGY G G G GG G
Sbjct: 574 GGGGGGGGSDYYGG--GGYGGGGYGGAPSGGYG 604
>pir||T45671 ATP-dependent RNA helicase-like protein - Arabidopsis thaliana
gi|6735368|emb|CAB68189.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 603
Score = 378 bits (971), Expect = e-103
Identities = 199/319 (62%), Positives = 238/319 (74%), Gaps = 3/319 (0%)
Frame = +2
Query: 290 AGGGY-GGGGRGGFG-GERGGYAGRGGAGRGEGGIGFNRPYDDPFKKAEAEKAEIDALY- 460
+GGGY GGR G+G G GG G GG GG +PF + AE++ ++
Sbjct: 67 SGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGGWDRREREVNPF----GDDAELEPVFT 122
Query: 461 GAENTGINFEAYEDIPVETSGKDVPPPVHSFEDLQLPACMMENIKRCKFTKPTPVQKHSI 640
ENTGINF+AYEDIPVETSG DVPPPV++F D+ L + NI+RCK+ +PTPVQ+H+I
Sbjct: 123 EQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAI 182
Query: 641 TIGLAGRDLMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNSRKALPGALVLAPTREL 820
I LA RDLMACAQTGSGKTAAFCFPII S +MK R SR P A++L+PTREL
Sbjct: 183 PILLAERDLMACAQTGSGKTAAFCFPII-SGIMKDQHVERPRGSRAVYPFAVILSPTREL 241
Query: 821 TSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGRLSDFIERGRVGL 1000
QI+DEA+KF+Y TG++ VV YGG P QLR+LERGCDILVATPGRL+D +ER RV +
Sbjct: 242 ACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSM 301
Query: 1001 SSIVFLCLDEADRMLDMGFEPQIRRIVEQEDMPPVGHRQTLMFSATFPKEIQRLASDFLA 1180
I FL LDEADRMLDMGFEPQIR+IVEQ DMPP G RQT++FSATFP +IQRLA+DF++
Sbjct: 302 QMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS 361
Query: 1181 NYVFLTVGRVGSSTDLIVQ 1237
NY+FL VGRVGSSTDLI Q
Sbjct: 362 NYIFLAVGRVGSSTDLITQ 380
Score = 42.4 bits (98), Expect = 0.017
Identities = 35/79 (44%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +1
Query: 85 YVPPHLRGMAMGAPPPPPPGGPGPVM--GGYGGFPVAGAGAAVP----GAAPFGDDR--G 240
YVPPHLR P P P P GYGG P AG+ A P G A G R G
Sbjct: 22 YVPPHLRNR-----PSEPVAAPLPQNDHAGYGGQP-AGSRWAPPSSGGGGASGGGYRNDG 75
Query: 241 PRGGYGGGYGAPRGGYGRW 297
R GYG G G GG G W
Sbjct: 76 GRTGYGYGAGGGGGGGGGW 94
Score = 36.2 bits (82), Expect = 1.2
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 293 GGGYGGGGRGGFGGERGGYAGRGGAGRGEGGIG 391
GGG GGGG +GG GGY G G G GG G
Sbjct: 565 GGGGGGGGSDYYGG--GGYGGGGYGGAPSGGYG 595
EST assemble image
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clone |
accession |
position |
| 1 |
CL53b08_r |
AV396007 |
1 |
509 |
| 2 |
MXL044e02_r |
BP095603 |
95 |
413 |
| 3 |
HCL062f11_r |
AV643040 |
95 |
603 |
| 4 |
HCL068f04_r |
AV643381 |
96 |
541 |
| 5 |
HCL083a05_r |
AV644155 |
116 |
542 |
| 6 |
CL39e11_r |
AV395215 |
185 |
681 |
| 7 |
HCL034a02_r |
AV641455 |
334 |
721 |
| 8 |
LCL053a03_r |
AV629143 |
371 |
823 |
| 9 |
CL67c12_r |
AV396711 |
390 |
850 |
| 10 |
LCL058g12_r |
AV629443 |
409 |
958 |
| 11 |
MXL098a06_r |
BP098723 |
510 |
868 |
| 12 |
MXL082d12_r |
BP097858 |
510 |
871 |
| 13 |
LCL040f08_r |
AV628367 |
525 |
833 |
| 14 |
MXL018d09_r |
BP094120 |
625 |
1052 |
| 15 |
CL61d04_r |
AV396343 |
629 |
1115 |
| 16 |
LCL077c10_r |
AV630328 |
659 |
1149 |
| 17 |
HCL038a07_r |
AV641647 |
795 |
1332 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute