Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000520A_C01 KCC000520A_c01
(530 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_135098.1| RIKEN cDNA 4930506F14 [Mus musculus] gi|1285415... 36 0.27
dbj|BAC87289.1| unnamed protein product [Homo sapiens] 34 1.0
emb|CAD90172.1| C. elegans NTL-3 protein (corresponding sequence... 34 1.3
ref|NP_499535.1| NOT-like, component of CCR4/NOT complex, CCR4-a... 34 1.3
ref|NP_077939.1| spermidine/putrescine transport system permease... 33 3.0
>ref|XP_135098.1| RIKEN cDNA 4930506F14 [Mus musculus] gi|12854159|dbj|BAB29945.1|
unnamed protein product [Mus musculus]
Length = 129
Score = 36.2 bits (82), Expect = 0.27
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -2
Query: 475 VVCVCVCTGDACRD*GSGWLRKSFVTPCQVLSDGSMDSIGPYR 347
V V + C+ GSGWLR+ TPCQVL DG +G R
Sbjct: 59 VTASLVFSSQVCK--GSGWLRQPSDTPCQVLGDGPALPLGKER 99
>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 34.3 bits (77), Expect = 1.0
Identities = 22/87 (25%), Positives = 32/87 (36%)
Frame = +1
Query: 235 CPHTRTVQWDRV*HTVCDHPDRCKRTHSASWPHR*PVSCMAQCYPCCHHSVLGKALRRIS 414
CPHT ++ H C THS + PH + + C H V +
Sbjct: 72 CPHTLSLSHTPT-QCTSSHSHTCSHTHSLTCPHTLAPTRHTHSHACTHPHVQTHTASAYT 130
Query: 415 ATSHFPSLDMHHRYTHTRTLHS*ALTH 495
T+H + H +H HS A +H
Sbjct: 131 FTTHSHTPGHTHSCSHLIHTHSHAHSH 157
>emb|CAD90172.1| C. elegans NTL-3 protein (corresponding sequence Y56A3A.1)
[Caenorhabditis elegans] gi|30425633|emb|CAB60507.2| C.
elegans NTL-3 protein (corresponding sequence Y56A3A.1)
[Caenorhabditis elegans]
Length = 701
Score = 33.9 bits (76), Expect = 1.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 260 GIAYSTPYATTQIDVNGRTP---QVGPTDDQFPVWPNAIHAAITQYLARRYEGFPQPATS 430
G + +TP +T I N P Q P PV+P A AA LA+ PQ S
Sbjct: 356 GRSTTTPVPSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKES 415
Query: 431 LVSTCITGT 457
+ ST G+
Sbjct: 416 ITSTTSRGS 424
>ref|NP_499535.1| NOT-like, component of CCR4/NOT complex, CCR4-associated Factor
family (ntl-3) [Caenorhabditis elegans]
Length = 513
Score = 33.9 bits (76), Expect = 1.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 260 GIAYSTPYATTQIDVNGRTP---QVGPTDDQFPVWPNAIHAAITQYLARRYEGFPQPATS 430
G + +TP +T I N P Q P PV+P A AA LA+ PQ S
Sbjct: 356 GRSTTTPVPSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKES 415
Query: 431 LVSTCITGT 457
+ ST G+
Sbjct: 416 ITSTTSRGS 424
>ref|NP_077939.1| spermidine/putrescine transport system permease [Ureaplasma
urealyticum] gi|11278982|pir||F82932
spermidine/putrescine transport system permease UU108
[imported] - Ureaplasma urealyticum
gi|6899064|gb|AAF30514.1|AE002111_3
spermidine/putrescine transport system permease
[Ureaplasma urealyticum]
Length = 335
Score = 32.7 bits (73), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = -3
Query: 345 NWSSVGPTCGVRPFTSIWVVAYGVLYAI 262
NWS + PT G++ F S+W+ A ++ +
Sbjct: 97 NWSVITPTIGMKIFNSLWIAAVATIFCL 124
