Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000516A_C01 KCC000516A_c01
(1016 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 392 e-108
gb|AAO72568.1| chloroplast photosystem I reaction center subunit... 236 4e-61
sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 231 1e-59
emb|CAA68728.1| unnamed protein product [Spinacia oleracea] 231 2e-59
sp|P12372|PSAD_LYCES Photosystem I reaction center subunit II, c... 228 1e-58
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
gi|629468|pir||S47088 psaD protein - Chlamydomonas
reinhardtii gi|498824|emb|CAA56122.1| psaD
[Chlamydomonas reinhardtii] gi|1644293|emb|CAA52440.1|
PSI reaction center, subunit II [Chlamydomonas
reinhardtii] gi|18478582|gb|AAL73208.1|AF335592_1
photosystem I subunit [Chlamydomonas reinhardtii]
Length = 196
Score = 392 bits (1008), Expect = e-108
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = +3
Query: 42 MAVMMRTQAPAATRASSRVAVAARPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNP 221
MAVMMRTQAPAATRASSRVAVAARPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNP
Sbjct: 1 MAVMMRTQAPAATRASSRVAVAARPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNP 60
Query: 222 DTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQ 401
DTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQ
Sbjct: 61 DTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQ 120
Query: 402 CLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVN 581
CLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVN
Sbjct: 121 CLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVN 180
Query: 582 PIKVKFSGRMMSPAEI 629
PIKVKFSGRMMSPAEI
Sbjct: 181 PIKVKFSGRMMSPAEI 196
>gb|AAO72568.1| chloroplast photosystem I reaction center subunit II precursor-like
protein [Oryza sativa (japonica cultivar-group)]
Length = 203
Score = 236 bits (603), Expect = 4e-61
Identities = 122/196 (62%), Positives = 145/196 (73%), Gaps = 11/196 (5%)
Frame = +3
Query: 54 MRTQAPAA--------TRASSRVAVAARPAARRAVVVRAEAEAAPAAAKKAAEKPA---W 200
M TQA AA A R + + P +R +RA AE PAAA +KPA +
Sbjct: 3 MATQASAAKCHLLAAWAPAKPRSSTLSMPTSRAPTSLRAAAEDQPAAAATEEKKPAPAGF 62
Query: 201 TVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLL 380
P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITW + KEQ+FEMPTGGAAIMR+GPNLL
Sbjct: 63 VPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLL 122
Query: 381 KFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMR 560
K +KEQCLAL T+LR+K+K+ FYRVFP+G+VQYLHP DGVYPEKVNAGR G QN R
Sbjct: 123 KLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFR 182
Query: 561 RIGQNVNPIKVKFSGR 608
IG+NV+PI+VKF+G+
Sbjct: 183 SIGKNVSPIEVKFTGK 198
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
Length = 212
Score = 231 bits (589), Expect = 1e-59
Identities = 117/185 (63%), Positives = 142/185 (76%), Gaps = 2/185 (1%)
Frame = +3
Query: 60 TQAPAATRASSRVAVAARPAARR-AVVVRAEAEAAPAAAKKAAEKP-AWTVPTLNPDTPS 233
T+ + + S V A++PA+R ++ A AE AAA + E P +T P L+P+TPS
Sbjct: 23 TRLTTSFKQPSAVTFASKPASRHHSIRAAAAAEGKAAAATETKEAPKGFTPPELDPNTPS 82
Query: 234 PIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLAL 413
PIF GSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK +KEQCLAL
Sbjct: 83 PIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 142
Query: 414 TTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKV 593
T+LR+K+K+ FYRVFP G+VQYLHP DGVYPEKVN GR G NMR IG+NV+PI+V
Sbjct: 143 GTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEV 202
Query: 594 KFSGR 608
KF+G+
Sbjct: 203 KFTGK 207
>emb|CAA68728.1| unnamed protein product [Spinacia oleracea]
Length = 212
Score = 231 bits (588), Expect = 2e-59
Identities = 117/185 (63%), Positives = 142/185 (76%), Gaps = 2/185 (1%)
Frame = +3
Query: 60 TQAPAATRASSRVAVAARPAARR-AVVVRAEAEAAPAAAKKAAEKP-AWTVPTLNPDTPS 233
T+ + + S V A++PA+R ++ A AE AAA + E P +T P L+P+TPS
Sbjct: 23 TRLTTSFKQPSAVTFASKPASRHHSIRAAAAAEGKRAAATETKEAPKGFTPPELDPNTPS 82
Query: 234 PIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLAL 413
PIF GSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK +KEQCLAL
Sbjct: 83 PIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 142
Query: 414 TTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKV 593
T+LR+K+K+ FYRVFP G+VQYLHP DGVYPEKVN GR G NMR IG+NV+PI+V
Sbjct: 143 GTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEV 202
Query: 594 KFSGR 608
KF+G+
Sbjct: 203 KFTGK 207
>sp|P12372|PSAD_LYCES Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
gi|82100|pir||S00449 photosystem I chain II precursor -
tomato gi|170492|gb|AAA34185.1| photosystem I subunit II
protein precursor gi|226544|prf||1601516A photosystem I
reaction center II
Length = 208
Score = 228 bits (582), Expect = 1e-58
Identities = 110/159 (69%), Positives = 130/159 (81%)
Frame = +3
Query: 138 VRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKK 317
+RA AE APAA ++ +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ K
Sbjct: 47 IRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPK 106
Query: 318 EQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHP 497
EQIFEMPTGGAAIMRQGPNLLK +KEQCLAL T+LR+K+K+ FYRVFP+G+VQYLHP
Sbjct: 107 EQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHP 166
Query: 498 ADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGRMM 614
DGVYPEKVN GR G QN R IG+N + I+VKF+G+ +
Sbjct: 167 KDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQV 205
