KCC000510A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000510A_C01 KCC000510A_c01
cgacattcctcaggagttgaaacttctgttcccgctgctctgccgactgccgtgcccata
cattgcggaattgcggaacaATCAAGCCCAGCTTTGCTTCATATGCCTGGCCAGTTGCAA
AACAAAACAATATCTCTGCTGTGATAATCATATTGCCGACAGACAAGCCACGCTGATACA
TTCAATTTTGCGCTCGAGACTCGTCGCTATGTCGCGCGTTTCGTGTCGTGCGCCGCCAGC
TTGCGCGACATGCAGTATAACCCTACGAAAGATTGGAACGATTCATGCGCTGAGAAATGT
ATGCGTGCGGGGCGTATTAAACCGAGGAGCCAGTCTCGGGCGCAGTCAAACTTTCCAGTC
CCGGCACACGGAGGTGTTGCAGGACCCCGAGTGGTGGGGAGCTGAGGCACCGGACCACGA
TGTGGCGCCCGCAGTGACAGCGGTGCCCCCCACCAACACCACGACCCGCGCCGACCTTCG
CTTGATCTTCACCTTCACCAACTATCTCAACGCCCACAAGCTGGACTTCTCGGCACTGTT
CTGTGCAGAGCCGCTGCTGTCAGCGGACGCGGCGCCCATATGCGACGTCACAGCAGGACA
CCACGCCGAGTTGCTGTCTGAGTACCTGACCAGCGGGCAGCTGCGTGTGGGCGAAAACCT
ACGCACTGGTTCTAAAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000510A_C01 KCC000510A_c01
         (677 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     38  0.16
ref|NP_862197.1| hypothetical protein [Streptomyces violaceorube...    36  0.47
ref|NP_729392.1| CG32353-PA [Drosophila melanogaster] gi|2309391...    36  0.47
gb|AAP86080.1| conserved hypothetical protein [Ralstonia eutropha]     36  0.47
ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174...    36  0.47

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
 Frame = +3

Query: 342 AVKLSSPGTR-RCCRT-------PSGGELRHRTTMW----RPQ*QRCP---PPTPRPAPT 476
           A ++ + G+R RCCR        P+ G    R T      RPQ  R P   PP PRPAPT
Sbjct: 359 ARRIRARGSRCRCCRGAGVEPEGPANGAGAGRPTATSGYARPQHARPPARAPPGPRPAPT 418

Query: 477 FA*SSPSPTISTPTSWTSR 533
            A S+P+ T S P S  +R
Sbjct: 419 RAASTPARTGSRPASPPTR 437

>ref|NP_862197.1| hypothetical protein [Streptomyces violaceoruber]
           gi|28797341|gb|AAO50188.1| hypothetical protein
           [Streptomyces violaceoruber]
          Length = 172

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 21/61 (34%), Positives = 27/61 (43%)
 Frame = +3

Query: 357 SPGTRRCCRTPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSPSPTISTPTSWTSRH 536
           S  T RC            +T WR +    PPP P+P      SSP+P  STP++ T   
Sbjct: 72  SSSTLRCSPHSPAWSPAPASTSWRSR-PGSPPPNPKPPARSPRSSPAPARSTPSAITEGD 130

Query: 537 C 539
           C
Sbjct: 131 C 131

>ref|NP_729392.1| CG32353-PA [Drosophila melanogaster] gi|23093919|gb|AAN12009.1|
           CG32353-PA [Drosophila melanogaster]
          Length = 804

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 321 TEEPVSGAVKLSSPGTRRCCR--TPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSP 494
           T  P      ++S G +   R  TP       R T W PQ +R   PTP P    A +  
Sbjct: 440 TTSPTPAEPPVASAGLQNLKRQHTPERQLSPERPTQWLPQQERALSPTPAPT---AINLQ 496

Query: 495 SPTISTPTSWTSRHCSVQSRCCQRTRRPYATSQQDTTPS 611
             +    +S+TSR  S+      R + P   +Q+  TPS
Sbjct: 497 DASSEVKSSYTSRFKSMFGAKEPRQKSPSPAAQRSRTPS 535

>gb|AAP86080.1| conserved hypothetical protein [Ralstonia eutropha]
          Length = 183

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 26/60 (43%), Positives = 33/60 (54%)
 Frame = +3

Query: 339 GAVKLSSPGTRRCCRTPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSPSPTISTPT 518
           GA  + S G+    + P+GG L   T  +RP   R PPPTP PAP     +P+PT  TPT
Sbjct: 42  GAEAILSAGSGAAVQPPAGGILAALT--YRPD--RNPPPTPAPAPAPT-PAPAPT-PTPT 95

>ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174160|gb|EAA00415.2|
           ENSANGP00000020181 [Anopheles gambiae str. PEST]
          Length = 340

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 32/93 (34%), Positives = 40/93 (42%), Gaps = 12/93 (12%)
 Frame = +3

Query: 336 SGAVKLSSPGTRRCC---RTPSG--GELRHRTTMWRPQ*--QRCPPPTPRPAPTFA*SSP 494
           S +  + S   RRCC   R+PS     LRHR T  R     +R  PPTPR   T A    
Sbjct: 72  SSSTAVRSTSGRRCCGRPRSPSATRATLRHRRTRRRAVRGMRRPRPPTPRTRTTTAGCRV 131

Query: 495 SPTISTPTSWTSRHCSVQSR-----CCQRTRRP 578
            P+  +  S T   C+   R     C +R  RP
Sbjct: 132 RPSFPSSRSRTRSTCTTVRRRTRALCRERPDRP 164



EST assemble image


clone accession position
1 LCL013e05_r AV626676 1 520
2 HCL060b08_r AV642901 140 677
3 LCL038g03_r AV628228 142 377
4 CL36a12_r AV395161 164 523




Chlamydomonas reinhardtii
Kazusa DNA Research Institute