KCC000510A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000510A_C01 KCC000510A_c01
cgacattcctcaggagttgaaacttctgttcccgctgctctgccgactgccgtgcccata
cattgcggaattgcggaacaATCAAGCCCAGCTTTGCTTCATATGCCTGGCCAGTTGCAA
AACAAAACAATATCTCTGCTGTGATAATCATATTGCCGACAGACAAGCCACGCTGATACA
TTCAATTTTGCGCTCGAGACTCGTCGCTATGTCGCGCGTTTCGTGTCGTGCGCCGCCAGC
TTGCGCGACATGCAGTATAACCCTACGAAAGATTGGAACGATTCATGCGCTGAGAAATGT
ATGCGTGCGGGGCGTATTAAACCGAGGAGCCAGTCTCGGGCGCAGTCAAACTTTCCAGTC
CCGGCACACGGAGGTGTTGCAGGACCCCGAGTGGTGGGGAGCTGAGGCACCGGACCACGA
TGTGGCGCCCGCAGTGACAGCGGTGCCCCCCACCAACACCACGACCCGCGCCGACCTTCG
CTTGATCTTCACCTTCACCAACTATCTCAACGCCCACAAGCTGGACTTCTCGGCACTGTT
CTGTGCAGAGCCGCTGCTGTCAGCGGACGCGGCGCCCATATGCGACGTCACAGCAGGACA
CCACGCCGAGTTGCTGTCTGAGTACCTGACCAGCGGGCAGCTGCGTGTGGGCGAAAACCT
ACGCACTGGTTCTAAAT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000510A_C01 KCC000510A_c01
(677 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK53449.1| unknown [Streptomyces aureofaciens] 38 0.16
ref|NP_862197.1| hypothetical protein [Streptomyces violaceorube... 36 0.47
ref|NP_729392.1| CG32353-PA [Drosophila melanogaster] gi|2309391... 36 0.47
gb|AAP86080.1| conserved hypothetical protein [Ralstonia eutropha] 36 0.47
ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174... 36 0.47
>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
Length = 579
Score = 37.7 bits (86), Expect = 0.16
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Frame = +3
Query: 342 AVKLSSPGTR-RCCRT-------PSGGELRHRTTMW----RPQ*QRCP---PPTPRPAPT 476
A ++ + G+R RCCR P+ G R T RPQ R P PP PRPAPT
Sbjct: 359 ARRIRARGSRCRCCRGAGVEPEGPANGAGAGRPTATSGYARPQHARPPARAPPGPRPAPT 418
Query: 477 FA*SSPSPTISTPTSWTSR 533
A S+P+ T S P S +R
Sbjct: 419 RAASTPARTGSRPASPPTR 437
>ref|NP_862197.1| hypothetical protein [Streptomyces violaceoruber]
gi|28797341|gb|AAO50188.1| hypothetical protein
[Streptomyces violaceoruber]
Length = 172
Score = 36.2 bits (82), Expect = 0.47
Identities = 21/61 (34%), Positives = 27/61 (43%)
Frame = +3
Query: 357 SPGTRRCCRTPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSPSPTISTPTSWTSRH 536
S T RC +T WR + PPP P+P SSP+P STP++ T
Sbjct: 72 SSSTLRCSPHSPAWSPAPASTSWRSR-PGSPPPNPKPPARSPRSSPAPARSTPSAITEGD 130
Query: 537 C 539
C
Sbjct: 131 C 131
>ref|NP_729392.1| CG32353-PA [Drosophila melanogaster] gi|23093919|gb|AAN12009.1|
CG32353-PA [Drosophila melanogaster]
Length = 804
Score = 36.2 bits (82), Expect = 0.47
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 321 TEEPVSGAVKLSSPGTRRCCR--TPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSP 494
T P ++S G + R TP R T W PQ +R PTP P A +
Sbjct: 440 TTSPTPAEPPVASAGLQNLKRQHTPERQLSPERPTQWLPQQERALSPTPAPT---AINLQ 496
Query: 495 SPTISTPTSWTSRHCSVQSRCCQRTRRPYATSQQDTTPS 611
+ +S+TSR S+ R + P +Q+ TPS
Sbjct: 497 DASSEVKSSYTSRFKSMFGAKEPRQKSPSPAAQRSRTPS 535
>gb|AAP86080.1| conserved hypothetical protein [Ralstonia eutropha]
Length = 183
Score = 36.2 bits (82), Expect = 0.47
Identities = 26/60 (43%), Positives = 33/60 (54%)
Frame = +3
Query: 339 GAVKLSSPGTRRCCRTPSGGELRHRTTMWRPQ*QRCPPPTPRPAPTFA*SSPSPTISTPT 518
GA + S G+ + P+GG L T +RP R PPPTP PAP +P+PT TPT
Sbjct: 42 GAEAILSAGSGAAVQPPAGGILAALT--YRPD--RNPPPTPAPAPAPT-PAPAPT-PTPT 95
>ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174160|gb|EAA00415.2|
ENSANGP00000020181 [Anopheles gambiae str. PEST]
Length = 340
Score = 36.2 bits (82), Expect = 0.47
Identities = 32/93 (34%), Positives = 40/93 (42%), Gaps = 12/93 (12%)
Frame = +3
Query: 336 SGAVKLSSPGTRRCC---RTPSG--GELRHRTTMWRPQ*--QRCPPPTPRPAPTFA*SSP 494
S + + S RRCC R+PS LRHR T R +R PPTPR T A
Sbjct: 72 SSSTAVRSTSGRRCCGRPRSPSATRATLRHRRTRRRAVRGMRRPRPPTPRTRTTTAGCRV 131
Query: 495 SPTISTPTSWTSRHCSVQSR-----CCQRTRRP 578
P+ + S T C+ R C +R RP
Sbjct: 132 RPSFPSSRSRTRSTCTTVRRRTRALCRERPDRP 164
EST assemble image
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|
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|
clone |
accession |
position |
1 |
LCL013e05_r |
AV626676 |
1 |
520 |
2 |
HCL060b08_r |
AV642901 |
140 |
677 |
3 |
LCL038g03_r |
AV628228 |
142 |
377 |
4 |
CL36a12_r |
AV395161 |
164 |
523 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute