KCC000499A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000499A_C01 KCC000499A_c01
cacgtccctgcgtgactcctccagaaattttagacgtagcgaaGCCAGACAGGCCACCAA
AGCTCAACAACGCGTGACGCAGGACCCTTCCCAGTGCTTTCCATTTAGCTGTGCCACGAA
CACTTGGTTCACCACCGCAATACATTTTTAATATGACCACTTGCTTGCATTTTTGAGGGG
CGCTATCAAACGTCCCCGGCGTAGCACCGGTTCAGCTGCAGCGGAGTCGGGTGAAAGCAG
CTGCGGTGGCCAACGACTGAGCGGCAAAGATGTGGGGCTTCTTCGTTTTCTCGATGATTC
TTATCTTCGGAGCAATTCTTGTACTGCTCCGGAGGTACTGCGCAAACTCCGTGACCCTGA
CCGTTAAGGGTGCGACTTCCTATGCTTGGCTCACCGCGATGGCTGTGGTAGCCATCGTGC
CACTGGACGTCTACTCAACGCTTAACTCCCACAAGCCGTCGGAGTTAGGCGTCATGTGGG
ACGTTGCCTTCTGGTCGACCCAGGCGCTGACCTGGCTGATTCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000499A_C01 KCC000499A_c01
         (525 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_201332.1| expressed protein [Arabidopsis thaliana] gi|975...    55  5e-07
ref|ZP_00089416.1| COG1226: Kef-type K+ transport systems, predi...    35  0.76
ref|XP_312472.1| ENSANGP00000003057 [Anopheles gambiae] gi|21296...    34  1.00
emb|CAC03679.1| SRM102 [Arabidopsis thaliana]                          33  2.2
pir||G84693 probable proline-rich protein [imported] - Arabidops...    33  2.2

>ref|NP_201332.1| expressed protein [Arabidopsis thaliana] gi|9759609|dbj|BAB11551.1|
           gene_id:MNA5.1~unknown protein [Arabidopsis thaliana]
          Length = 733

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 23/89 (25%), Positives = 46/89 (50%), Gaps = 4/89 (4%)
 Frame = +3

Query: 270 MWGFFVFSMILIFGAILVLLRRYCANSVTLTVKGATSYAWLTAMAVVAIVPLDVYSTLNS 449
           MW F++ S+ L  G ++  LR +    +   V     Y W  +++V+ + P D+++TL+ 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 450 H----KPSELGVMWDVAFWSTQALTWLIL 524
                +   +  +W  ++WST  LTW ++
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVV 89

>ref|ZP_00089416.1| COG1226: Kef-type K+ transport systems, predicted NAD-binding
           component [Azotobacter vinelandii]
          Length = 564

 Score = 34.7 bits (78), Expect = 0.76
 Identities = 29/109 (26%), Positives = 46/109 (41%)
 Frame = +3

Query: 192 VPGVAPVQLQRSRVKAAAVAND*AAKMWGFFVFSMILIFGAILVLLRRYCANSVTLTVKG 371
           +PG A +Q+  +    A VA      + G  VF + L   + +VLLR   A+ V  ++ G
Sbjct: 89  LPG-AMLQIAVATALGAVVAISWGWSLGGALVFGLALSVASTVVLLRTLEAHGVLESLNG 147

Query: 372 ATSYAWLTAMAVVAIVPLDVYSTLNSHKPSELGVMWDVAFWSTQALTWL 518
             +  WL    +  ++ L +   L+           D   W T ALT L
Sbjct: 148 RIAVGWLVVEDLAMVLVLVLLPPLSGWLGGTTAEGADGNLWGTLALTLL 196

>ref|XP_312472.1| ENSANGP00000003057 [Anopheles gambiae] gi|21296027|gb|EAA08172.1|
           ENSANGP00000003057 [Anopheles gambiae str. PEST]
          Length = 695

 Score = 34.3 bits (77), Expect = 1.00
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 31/111 (27%)
 Frame = +3

Query: 285 VFSMILIFGAILVLLRRY-CANSVTLTVKGATSYAWLTAMAVVAIVPLDVYSTL------ 443
           VFS+ L      + L RY C       V  +   AW  +  +V  +PLDV ST+      
Sbjct: 6   VFSICLALLLASISLYRYGCIQRQHPIVTFSVLTAWSFSFLIVFTIPLDVTSTVYRQCLQ 65

Query: 444 -----------NSHKPSEL-----GV--------MWDVAFWSTQALTWLIL 524
                      N+  P  +     G+        +W + +WS+Q LTWLI+
Sbjct: 66  EHNITGSNGSNNNDAPDAICQRPWGMVEEEVFPNLWRIIYWSSQFLTWLIM 116

>emb|CAC03679.1| SRM102 [Arabidopsis thaliana]
          Length = 894

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 33/119 (27%), Positives = 53/119 (43%), Gaps = 4/119 (3%)
 Frame = -1

Query: 507 APGSTRRQRPT*----RLTPTACGS*ALSRRPVARWLPQPSR*AKHRKSHP*RSGSRSLR 340
           +P + RR+ P+     R +P+       S  P AR    PS  A+  +S P    +R  R
Sbjct: 330 SPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPP---PARRRR 386

Query: 339 STSGAVQELLRR*ESSRKRRSPTSLPLSRWPPQLLSPDSAAAEPVLRRGRLIAPLKNAS 163
           S S   +        +R+RRSP+ L      P  L   + +  P+ +RGR  +P ++ S
Sbjct: 387 SPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPS 445

>pir||G84693 probable proline-rich protein [imported] - Arabidopsis thaliana
           gi|3980411|gb|AAC95214.1| putative proline-rich protein
           [Arabidopsis thaliana]
          Length = 891

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 33/119 (27%), Positives = 53/119 (43%), Gaps = 4/119 (3%)
 Frame = -1

Query: 507 APGSTRRQRPT*----RLTPTACGS*ALSRRPVARWLPQPSR*AKHRKSHP*RSGSRSLR 340
           +P + RR+ P+     R +P+       S  P AR    PS  A+  +S P    +R  R
Sbjct: 327 SPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPP---PARRRR 383

Query: 339 STSGAVQELLRR*ESSRKRRSPTSLPLSRWPPQLLSPDSAAAEPVLRRGRLIAPLKNAS 163
           S S   +        +R+RRSP+ L      P  L   + +  P+ +RGR  +P ++ S
Sbjct: 384 SPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPS 442



EST assemble image


clone accession position
1 CL35b11_r AV395068 1 525
2 HCL064c12_r AV643133 44 497
3 HCL001b08_r AV639570 57 339




Chlamydomonas reinhardtii
Kazusa DNA Research Institute