Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000497A_C01 KCC000497A_c01
(811 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB24570.1| unnamed protein product [Mus musculus] 52 1e-05
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 51 2e-05
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 51 2e-05
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 51 2e-05
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 51 2e-05
>dbj|BAB24570.1| unnamed protein product [Mus musculus]
Length = 287
Score = 51.6 bits (122), Expect = 1e-05
Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Frame = +2
Query: 101 SSYTLLRHPRCSTRTSSLRPRSRRLPF----------TRHLRRSRRRPRLPRSRSGTRSL 250
S T+L+ PR LRPRSRR R L+ RR R RS SG RS
Sbjct: 54 SGKTVLKSPR------PLRPRSRRKAAKKAREVWRRKARALKARSRRVR-TRSTSGARSR 106
Query: 251 TPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARK 430
T SR S+ T T RA ++ A SR+ S ++ R ++ S+ S+A+S +R AR
Sbjct: 107 TRSRASSRATSRATSRARSR-ARSRAQSSARSSARSSAKSSAKSSTRSSAKSWARSKARS 165
Query: 431 RS-----TMSTSAARPAAQRMRRTRRRHR 502
R+ + S AR AQ + R R R
Sbjct: 166 RARSRAKDLVRSKAREQAQAREQARARAR 194
Score = 33.5 bits (75), Expect = 4.2
Identities = 26/91 (28%), Positives = 38/91 (41%)
Frame = +2
Query: 221 PRSRSGTRSLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAA 400
PR ++G LT S+ T +PR + ++++ RR RA A +
Sbjct: 38 PREKAGQSRLTLGSHSSGKTVLKSPRPLRPRSRRKAAKKAREVWRRKARALKARSRRVRT 97
Query: 401 RSVSRVPARKRSTMSTSAARPAAQRMRRTRR 493
RS S +R RS S+ A A R R R
Sbjct: 98 RSTSGARSRTRSRASSRATSRATSRARSRAR 128
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/132 (31%), Positives = 55/132 (40%)
Frame = +2
Query: 182 TRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRP 361
+R RR R R P +R +RS TP+R+ S + + R S P+R +R
Sbjct: 519 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS---RSRTPA 575
Query: 362 RRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRRTRRRHRWMVVSLYHERAS* 541
RR S + RS +R P R+RS + A R R R RR R R
Sbjct: 576 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR------SRSRTPA 629
Query: 542 GSTESRRRHPAR 577
SR R PAR
Sbjct: 630 RRGRSRSRTPAR 641
Score = 50.8 bits (120), Expect = 3e-05
Identities = 47/135 (34%), Positives = 59/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT------RSLTPSRKSASTT 280
R R +R+ + R RSR R R R P RSRS T RS TP+R+ S +
Sbjct: 523 RRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRS 582
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARK-RSTMSTSAA 457
+ R S +P R + RR R+ + T RS SR PAR+ RS T A
Sbjct: 583 RTPARRRSRTRSPVRRRSRSRSPARRSGRSR-SRTPARRGRSRSRTPARRGRSRSRTPAR 641
Query: 458 RPAAQRMRRTRRRHR 502
R R R RR R
Sbjct: 642 RSGRSRSRTPARRGR 656
Score = 45.8 bits (107), Expect = 8e-04
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 17/139 (12%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLR-----RSRRRPRLPRSRSGTRSLTPSRKSASTTWSW 289
R +RT + R RSR R P R R R R R R P R +RS TP+R+ + T
Sbjct: 537 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 596
Query: 290 TPRASTQS-----------APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRS 436
R+ ++S P+R S T R R+ + A + RS SR PAR+
Sbjct: 597 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 656
Query: 437 TMSTSAARPAAQRMRRTRR 493
+ S + R ++ RR
Sbjct: 657 SRSRTPRRGRSRSRSLVRR 675
Score = 43.9 bits (102), Expect = 0.003
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLRRSRR--RPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RT + R SR R P R R ++R R R P+ R +RS P R S + + R
Sbjct: 459 RSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS--PQRPGWSRSRNTQRR 516
Query: 299 ASTQSAP-----SRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
++SA SRS + +R R RR S + RS SR P R+RS T A
Sbjct: 517 GRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR 576
Query: 458 RPAAQRMRRTRRRHRWMVVSLYHERA---S*GSTESRRRHPAR 577
R ++ RRR R R+ + S SR R PAR
Sbjct: 577 RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 619
Score = 43.1 bits (100), Expect = 0.005
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT---RSLTPSRKSASTT--- 280
R R + ++ R RSR T+ R P+ RSRS RS +P R+ S +
Sbjct: 445 RMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR 504
Query: 281 --WSWTPRASTQSAPSRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMST 448
WS R + + SRS+ + R P R + T RS SR PAR+RS T
Sbjct: 505 PGWS-RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 563
Query: 449 SAARPAAQRMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R + R R R R + R S SR R PAR
Sbjct: 564 PTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 607
Score = 37.0 bits (84), Expect = 0.38
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +2
Query: 104 SYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTW 283
S T R R +RT + R RSR R R R R R P R +RS TP R+ S +
Sbjct: 614 SRTPARRGRSRSRTPARRGRSRSRTPAR--RSGRSRSRTPARRGRSRSRTP-RRGRSRSR 670
Query: 284 SWTPRASTQS-APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S R + S P R S ++ R+ + + T+ +RS S P K+S +S+ +R
Sbjct: 671 SLVRRGRSHSRTPQRRGRSGSSSERKNK----SRTSQRRSRSNSS-PEMKKSRISSRRSR 725
Query: 461 PAAQRMRRTRRR 496
+ + + R
Sbjct: 726 SLSSPRSKAKSR 737
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = -1
Query: 619 PWMQRTSQGR------HRHLACRVPSTRLG*ASRGPFVVQADDHPSVTPTRPPHPLRRGP 458
P + S GR H H PS R+G SR P + S TPT+ H R P
Sbjct: 422 PTSKNRSHGRAKRDKSHSH----TPSRRMG-RSRSPATAKRGRSRSRTPTKRGHSRSRSP 476
Query: 457 GRARAHGASLSRWHAGNRSCSAARRAGTWRPSRP 356
R+ A RW RS S RR + P RP
Sbjct: 477 QWRRSRSA--QRW---GRSRSPQRRGRSRSPQRP 505
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/132 (31%), Positives = 55/132 (40%)
Frame = +2
Query: 182 TRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRP 361
+R RR R R P +R +RS TP+R+ S + + R S P+R +R
Sbjct: 344 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS---RSRTPA 400
Query: 362 RRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRRTRRRHRWMVVSLYHERAS* 541
RR S + RS +R P R+RS + A R R R RR R R
Sbjct: 401 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR------SRSRTPA 454
Query: 542 GSTESRRRHPAR 577
SR R PAR
Sbjct: 455 RRGRSRSRTPAR 466
Score = 50.8 bits (120), Expect = 3e-05
Identities = 47/135 (34%), Positives = 59/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT------RSLTPSRKSASTT 280
R R +R+ + R RSR R R R P RSRS T RS TP+R+ S +
Sbjct: 348 RRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRS 407
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARK-RSTMSTSAA 457
+ R S +P R + RR R+ + T RS SR PAR+ RS T A
Sbjct: 408 RTPARRRSRTRSPVRRRSRSRSPARRSGRSR-SRTPARRGRSRSRTPARRGRSRSRTPAR 466
Query: 458 RPAAQRMRRTRRRHR 502
R R R RR R
Sbjct: 467 RSGRSRSRTPARRGR 481
Score = 45.8 bits (107), Expect = 8e-04
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 17/139 (12%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLR-----RSRRRPRLPRSRSGTRSLTPSRKSASTTWSW 289
R +RT + R RSR R P R R R R R R P R +RS TP+R+ + T
Sbjct: 362 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 421
Query: 290 TPRASTQS-----------APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRS 436
R+ ++S P+R S T R R+ + A + RS SR PAR+
Sbjct: 422 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 481
Query: 437 TMSTSAARPAAQRMRRTRR 493
+ S + R ++ RR
Sbjct: 482 SRSRTPRRGRSRSRSLVRR 500
Score = 43.9 bits (102), Expect = 0.003
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLRRSRR--RPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RT + R SR R P R R ++R R R P+ R +RS P R S + + R
Sbjct: 284 RSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS--PQRPGWSRSRNTQRR 341
Query: 299 ASTQSAP-----SRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
++SA SRS + +R R RR S + RS SR P R+RS T A
Sbjct: 342 GRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR 401
Query: 458 RPAAQRMRRTRRRHRWMVVSLYHERA---S*GSTESRRRHPAR 577
R ++ RRR R R+ + S SR R PAR
Sbjct: 402 RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 444
Score = 43.1 bits (100), Expect = 0.005
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT---RSLTPSRKSASTT--- 280
R R + ++ R RSR T+ R P+ RSRS RS +P R+ S +
Sbjct: 270 RMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR 329
Query: 281 --WSWTPRASTQSAPSRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMST 448
WS R + + SRS+ + R P R + T RS SR PAR+RS T
Sbjct: 330 PGWS-RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 388
Query: 449 SAARPAAQRMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R + R R R R + R S SR R PAR
Sbjct: 389 PTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 432
Score = 37.0 bits (84), Expect = 0.38
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +2
Query: 104 SYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTW 283
S T R R +RT + R RSR R R R R R P R +RS TP R+ S +
Sbjct: 439 SRTPARRGRSRSRTPARRGRSRSRTPAR--RSGRSRSRTPARRGRSRSRTP-RRGRSRSR 495
Query: 284 SWTPRASTQS-APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S R + S P R S ++ R+ + + T+ +RS S P K+S +S+ +R
Sbjct: 496 SLVRRGRSHSRTPQRRGRSGSSSERKNK----SRTSQRRSRSNSS-PEMKKSRISSRRSR 550
Query: 461 PAAQRMRRTRRR 496
+ + + R
Sbjct: 551 SLSSPRSKAKSR 562
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = -1
Query: 619 PWMQRTSQGR------HRHLACRVPSTRLG*ASRGPFVVQADDHPSVTPTRPPHPLRRGP 458
P + S GR H H PS R+G SR P + S TPT+ H R P
Sbjct: 247 PTSKNRSHGRAKRDKSHSH----TPSRRMG-RSRSPATAKRGRSRSRTPTKRGHSRSRSP 301
Query: 457 GRARAHGASLSRWHAGNRSCSAARRAGTWRPSRP 356
R+ A RW RS S RR + P RP
Sbjct: 302 QWRRSRSA--QRW---GRSRSPQRRGRSRSPQRP 330
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/132 (31%), Positives = 55/132 (40%)
Frame = +2
Query: 182 TRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRP 361
+R RR R R P +R +RS TP+R+ S + + R S P+R +R
Sbjct: 554 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS---RSRTPA 610
Query: 362 RRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRRTRRRHRWMVVSLYHERAS* 541
RR S + RS +R P R+RS + A R R R RR R R
Sbjct: 611 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR------SRSRTPA 664
Query: 542 GSTESRRRHPAR 577
SR R PAR
Sbjct: 665 RRGRSRSRTPAR 676
Score = 50.8 bits (120), Expect = 3e-05
Identities = 47/135 (34%), Positives = 59/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT------RSLTPSRKSASTT 280
R R +R+ + R RSR R R R P RSRS T RS TP+R+ S +
Sbjct: 558 RRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRS 617
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARK-RSTMSTSAA 457
+ R S +P R + RR R+ + T RS SR PAR+ RS T A
Sbjct: 618 RTPARRRSRTRSPVRRRSRSRSPARRSGRSR-SRTPARRGRSRSRTPARRGRSRSRTPAR 676
Query: 458 RPAAQRMRRTRRRHR 502
R R R RR R
Sbjct: 677 RSGRSRSRTPARRGR 691
Score = 47.8 bits (112), Expect = 2e-04
Identities = 44/151 (29%), Positives = 62/151 (40%)
Frame = +2
Query: 125 PRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRAS 304
P+ +RT R SR P R RR R S TRS TP R R+
Sbjct: 1678 PKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR---------RSP 1728
Query: 305 TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRR 484
+ S+P + +S + RRR +P T RS P+ K + S +R ++ R
Sbjct: 1729 SVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRS----PSPKPRGLQRSRSRSRREKTRT 1784
Query: 485 TRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
TRRR +R+ + SRRR +R
Sbjct: 1785 TRRR----------DRSGSSQSTSRRRQRSR 1805
Score = 46.6 bits (109), Expect = 5e-04
Identities = 49/148 (33%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Frame = +2
Query: 101 SSYTLLRHPRCS--TRTSSLRPRSRRLPFTRHLR----------RSRRRPRLPRSRSGTR 244
SS L R R S +R++S P +R RH R R R RS S R
Sbjct: 1693 SSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPR 1752
Query: 245 SLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTAC--SAARSVSRV 418
+ T SR+ S S PR +S E TRRR R ST+ +RS SRV
Sbjct: 1753 TKTTSRRGRSP--SPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRV 1810
Query: 419 PARKRSTMSTSAARPAAQRMRRTRRRHR 502
R+R + PA Q RT R R
Sbjct: 1811 TRRRRGGSGYHSRSPARQESSRTSSRRR 1838
Score = 45.8 bits (107), Expect = 8e-04
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 17/139 (12%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLR-----RSRRRPRLPRSRSGTRSLTPSRKSASTTWSW 289
R +RT + R RSR R P R R R R R R P R +RS TP+R+ + T
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 631
Query: 290 TPRASTQS-----------APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRS 436
R+ ++S P+R S T R R+ + A + RS SR PAR+
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 437 TMSTSAARPAAQRMRRTRR 493
+ S + R ++ RR
Sbjct: 692 SRSRTPRRGRSRSRSLVRR 710
Score = 45.1 bits (105), Expect = 0.001
Identities = 46/131 (35%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R R T + R RSR P +R RS R P + R RS +R+ T R+S S T T R
Sbjct: 1898 RRSRSRTSVTRRRSRSRASPVSRRRSRS-RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956
Query: 299 ASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRM 478
S P TRRR R T +RS + R+RS TS R
Sbjct: 1957 RSRSRTPP-------VTRRRSRSRTSPITR-RRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2008
Query: 479 RR---TRRRHR 502
R TRRR R
Sbjct: 2009 RTSPVTRRRSR 2019
Score = 44.7 bits (104), Expect = 0.002
Identities = 51/156 (32%), Positives = 69/156 (43%), Gaps = 8/156 (5%)
Frame = +2
Query: 134 STRTSSLRPR--SRRLPFTRHLRRSRRRPR-LPRSRSGTRSLTPSRKSASTTWSWTPRAS 304
S+RTSS R R SR P +R RSR P RSRS T R + T R+
Sbjct: 1830 SSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSR 1889
Query: 305 TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVP----ARKRSTMSTSAARPAAQ 472
++++P S T RR+ ++ S RS SR P R RS T+ R ++
Sbjct: 1890 SRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSR 1949
Query: 473 RMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
TRRR R + R+ S S +RRR +R
Sbjct: 1950 TPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR 1985
Score = 44.3 bits (103), Expect = 0.002
Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Frame = +2
Query: 128 RCSTRTSSL---RPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RTS R RSR P T H R R P + R RS +R+ SR+ + + S T R
Sbjct: 1851 RSRSRTSPAPWKRSRSRASPAT-HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRR 1909
Query: 299 AS-TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVP--ARKRSTMSTSAARPAA 469
S ++++P S T RR + T + RS SR P R+RS T
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRR 1969
Query: 470 QRMRR---TRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R R TRRR R + R+ S S +RRR +R
Sbjct: 1970 SRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSR 2009
Score = 43.9 bits (102), Expect = 0.003
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLRRSRR--RPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RT + R SR R P R R ++R R R P+ R +RS P R S + + R
Sbjct: 494 RSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS--PQRPGWSRSRNTQRR 551
Query: 299 ASTQSAP-----SRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
++SA SRS + +R R RR S + RS SR P R+RS T A
Sbjct: 552 GRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR 611
Query: 458 RPAAQRMRRTRRRHRWMVVSLYHERA---S*GSTESRRRHPAR 577
R ++ RRR R R+ + S SR R PAR
Sbjct: 612 RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 43.1 bits (100), Expect = 0.005
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Frame = +2
Query: 137 TRTSSLRPRSRRLPFTRHLRRSRRRPRLP-------RSRSGTRSLTPSRKSASTTWSWTP 295
T+T+S R RS P R L+RSR R R R RSG+ T R+ S + S
Sbjct: 1753 TKTTSRRGRSPS-PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVT 1811
Query: 296 RAST------QSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
R +P+R S ++RRR R+ T+ +RS + KRS S A
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPA 1871
Query: 458 RPAAQRMRR---TRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
R R +RRR R + R+ ++ +RRR +R
Sbjct: 1872 THRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Score = 43.1 bits (100), Expect = 0.005
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT---RSLTPSRKSASTT--- 280
R R + ++ R RSR T+ R P+ RSRS RS +P R+ S +
Sbjct: 480 RMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR 539
Query: 281 --WSWTPRASTQSAPSRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMST 448
WS R + + SRS+ + R P R + T RS SR PAR+RS T
Sbjct: 540 PGWS-RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 598
Query: 449 SAARPAAQRMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R + R R R R + R S SR R PAR
Sbjct: 599 PTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Score = 41.2 bits (95), Expect = 0.020
Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Frame = +2
Query: 122 HPRCSTRT---SSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRK-SASTTWSW 289
H R +RT S R RSR P +R RRSR R + R RS +R+ SR+ S S T
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSR--RRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Query: 290 TPRAS-----TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSA 454
T R S T SRS RR R P + S +R+ R RS S
Sbjct: 1931 TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVT 1990
Query: 455 ARPAAQR---MRRTRRRHRWMVVSLYHERAS*GSTESRRRHP 571
R + R + R R R R V+ R+ + + R P
Sbjct: 1991 RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAQDQPRSP 2032
Score = 40.0 bits (92), Expect = 0.045
Identities = 44/130 (33%), Positives = 57/130 (43%)
Frame = +2
Query: 101 SSYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTT 280
+S T R ++ S R RSR P TR RSR RSRS T +T R
Sbjct: 1904 TSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR---- 1959
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S TP + + + SR+S TRRR R T +RS + R+RS TS
Sbjct: 1960 -SRTPPVTRRRSRSRTSPI---TRRRSRSRTSPVTR-RRSRSRTSPVTRRRSRSRTS--- 2011
Query: 461 PAAQRMRRTR 490
P +R R+R
Sbjct: 2012 PVTRRRSRSR 2021
Score = 38.9 bits (89), Expect = 0.100
Identities = 34/93 (36%), Positives = 43/93 (45%), Gaps = 6/93 (6%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRP-RLPRSRSGTRSLTPSRKSASTTWSWTP 295
R R T T+ R RSR P TR RSR P RSRS T +T R + T+
Sbjct: 1933 RRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR 1992
Query: 296 RASTQSAP-----SRSSESC*NTRRRPRRAPCA 379
R+ ++++P SRS S RR R P A
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPA 2025
Score = 37.0 bits (84), Expect = 0.38
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +2
Query: 104 SYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTW 283
S T R R +RT + R RSR R R R R R P R +RS TP R+ S +
Sbjct: 649 SRTPARRGRSRSRTPARRGRSRSRTPAR--RSGRSRSRTPARRGRSRSRTP-RRGRSRSR 705
Query: 284 SWTPRASTQS-APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S R + S P R S ++ R+ + + T+ +RS S P K+S +S+ +R
Sbjct: 706 SLVRRGRSHSRTPQRRGRSGSSSERKNK----SRTSQRRSRSNSS-PEMKKSRISSRRSR 760
Query: 461 PAAQRMRRTRRR 496
+ + + R
Sbjct: 761 SLSSPRSKAKSR 772
Score = 35.8 bits (81), Expect = 0.84
Identities = 45/157 (28%), Positives = 63/157 (39%), Gaps = 10/157 (6%)
Frame = +2
Query: 137 TRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSA 316
+R S R RS P + R+ PR++SG+ S + A PR S +
Sbjct: 1589 SRLSPRRSRSGSSPEVKDKPRAA-----PRAQSGSDSSPEPKAPAPRA---LPRRSRSGS 1640
Query: 317 PSR----SSESC*NTRRRPRRAPCASTACSAARSV------SRVPARKRSTMSTSAARPA 466
S+ S E +T P P + TA +RS SR P R+RS+ S+ P
Sbjct: 1641 SSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSS----PE 1696
Query: 467 AQRMRRTRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
R R RR R++ S E+R R P R
Sbjct: 1697 LTRKARLSRR----------SRSASSSPETRSRTPPR 1723
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = -1
Query: 619 PWMQRTSQGR------HRHLACRVPSTRLG*ASRGPFVVQADDHPSVTPTRPPHPLRRGP 458
P + S GR H H PS R+G SR P + S TPT+ H R P
Sbjct: 457 PTSKNRSHGRAKRDKSHSH----TPSRRMG-RSRSPATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 457 GRARAHGASLSRWHAGNRSCSAARRAGTWRPSRP 356
R+ A RW RS S RR + P RP
Sbjct: 512 QWRRSRSA--QRW---GRSRSPQRRGRSRSPQRP 540
Score = 33.1 bits (74), Expect = 5.5
Identities = 36/125 (28%), Positives = 52/125 (40%), Gaps = 9/125 (7%)
Frame = +2
Query: 140 RTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSL--TPSRKSASTTWSWTPRASTQS 313
RT S R RS P R + R L S G + + TPSR + S P+A Q+
Sbjct: 1433 RTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQT 1492
Query: 314 APSRS----SESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSA---ARPAAQ 472
RS S N P+R S + ++V+R P +RS +S +P+A
Sbjct: 1493 PRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSAS 1552
Query: 473 RMRRT 487
R+
Sbjct: 1553 PQERS 1557
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/132 (31%), Positives = 55/132 (40%)
Frame = +2
Query: 182 TRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRP 361
+R RR R R P +R +RS TP+R+ S + + R S P+R +R
Sbjct: 554 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS---RSRTPA 610
Query: 362 RRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRRTRRRHRWMVVSLYHERAS* 541
RR S + RS +R P R+RS + A R R R RR R R
Sbjct: 611 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR------SRSRTPA 664
Query: 542 GSTESRRRHPAR 577
SR R PAR
Sbjct: 665 RRGRSRSRTPAR 676
Score = 50.8 bits (120), Expect = 3e-05
Identities = 47/135 (34%), Positives = 59/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT------RSLTPSRKSASTT 280
R R +R+ + R RSR R R R P RSRS T RS TP+R+ S +
Sbjct: 558 RRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRS 617
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARK-RSTMSTSAA 457
+ R S +P R + RR R+ + T RS SR PAR+ RS T A
Sbjct: 618 RTPARRRSRTRSPVRRRSRSRSPARRSGRSR-SRTPARRGRSRSRTPARRGRSRSRTPAR 676
Query: 458 RPAAQRMRRTRRRHR 502
R R R RR R
Sbjct: 677 RSGRSRSRTPARRGR 691
Score = 50.4 bits (119), Expect = 3e-05
Identities = 51/157 (32%), Positives = 68/157 (42%), Gaps = 8/157 (5%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRP-RLPRSRSGTRSLTPSRKSASTTWSWTP 295
R R T T+ R RSR P TR RSR P RSRS T +T R + T+
Sbjct: 1933 RRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR 1992
Query: 296 RASTQSAP-----SRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
R+ ++++P SRS S RR R P A S +R+ R RS + R
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRR 2052
Query: 461 PAAQRMRRTRRRHRWMVVS--LYHERAS*GSTESRRR 565
+ R RT R R + S R++ GS+ R R
Sbjct: 2053 RSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSR 2089
Score = 47.8 bits (112), Expect = 2e-04
Identities = 44/151 (29%), Positives = 62/151 (40%)
Frame = +2
Query: 125 PRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRAS 304
P+ +RT R SR P R RR R S TRS TP R R+
Sbjct: 1678 PKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR---------RSP 1728
Query: 305 TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRMRR 484
+ S+P + +S + RRR +P T RS P+ K + S +R ++ R
Sbjct: 1729 SVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRS----PSPKPRGLQRSRSRSRREKTRT 1784
Query: 485 TRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
TRRR +R+ + SRRR +R
Sbjct: 1785 TRRR----------DRSGSSQSTSRRRQRSR 1805
Score = 46.6 bits (109), Expect = 5e-04
Identities = 49/148 (33%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Frame = +2
Query: 101 SSYTLLRHPRCS--TRTSSLRPRSRRLPFTRHLR----------RSRRRPRLPRSRSGTR 244
SS L R R S +R++S P +R RH R R R RS S R
Sbjct: 1693 SSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPR 1752
Query: 245 SLTPSRKSASTTWSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTAC--SAARSVSRV 418
+ T SR+ S S PR +S E TRRR R ST+ +RS SRV
Sbjct: 1753 TKTTSRRGRSP--SPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRV 1810
Query: 419 PARKRSTMSTSAARPAAQRMRRTRRRHR 502
R+R + PA Q RT R R
Sbjct: 1811 TRRRRGGSGYHSRSPARQESSRTSSRRR 1838
Score = 45.8 bits (107), Expect = 8e-04
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 17/139 (12%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLR-----RSRRRPRLPRSRSGTRSLTPSRKSASTTWSW 289
R +RT + R RSR R P R R R R R R P R +RS TP+R+ + T
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 631
Query: 290 TPRASTQS-----------APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRS 436
R+ ++S P+R S T R R+ + A + RS SR PAR+
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 437 TMSTSAARPAAQRMRRTRR 493
+ S + R ++ RR
Sbjct: 692 SRSRTPRRGRSRSRSLVRR 710
Score = 45.1 bits (105), Expect = 0.001
Identities = 46/131 (35%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R R T + R RSR P +R RS R P + R RS +R+ T R+S S T T R
Sbjct: 1898 RRSRSRTSVTRRRSRSRASPVSRRRSRS-RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956
Query: 299 ASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQRM 478
S P TRRR R T +RS + R+RS TS R
Sbjct: 1957 RSRSRTPP-------VTRRRSRSRTSPITR-RRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2008
Query: 479 RR---TRRRHR 502
R TRRR R
Sbjct: 2009 RTSPVTRRRSR 2019
Score = 44.7 bits (104), Expect = 0.002
Identities = 51/156 (32%), Positives = 69/156 (43%), Gaps = 8/156 (5%)
Frame = +2
Query: 134 STRTSSLRPR--SRRLPFTRHLRRSRRRPR-LPRSRSGTRSLTPSRKSASTTWSWTPRAS 304
S+RTSS R R SR P +R RSR P RSRS T R + T R+
Sbjct: 1830 SSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSR 1889
Query: 305 TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVP----ARKRSTMSTSAARPAAQ 472
++++P S T RR+ ++ S RS SR P R RS T+ R ++
Sbjct: 1890 SRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSR 1949
Query: 473 RMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
TRRR R + R+ S S +RRR +R
Sbjct: 1950 TPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR 1985
Score = 44.3 bits (103), Expect = 0.002
Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Frame = +2
Query: 128 RCSTRTSSL---RPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RTS R RSR P T H R R P + R RS +R+ SR+ + + S T R
Sbjct: 1851 RSRSRTSPAPWKRSRSRASPAT-HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRR 1909
Query: 299 AS-TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVP--ARKRSTMSTSAARPAA 469
S ++++P S T RR + T + RS SR P R+RS T
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRR 1969
Query: 470 QRMRR---TRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R R TRRR R + R+ S S +RRR +R
Sbjct: 1970 SRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSR 2009
Score = 43.9 bits (102), Expect = 0.003
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Frame = +2
Query: 128 RCSTRTSSLRPRSR-RLPFTRHLRRSRR--RPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RT + R SR R P R R ++R R R P+ R +RS P R S + + R
Sbjct: 494 RSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS--PQRPGWSRSRNTQRR 551
Query: 299 ASTQSAP-----SRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
++SA SRS + +R R RR S + RS SR P R+RS T A
Sbjct: 552 GRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR 611
Query: 458 RPAAQRMRRTRRRHRWMVVSLYHERA---S*GSTESRRRHPAR 577
R ++ RRR R R+ + S SR R PAR
Sbjct: 612 RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 43.1 bits (100), Expect = 0.005
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Frame = +2
Query: 119 RHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGT---RSLTPSRKSASTT--- 280
R R + ++ R RSR T+ R P+ RSRS RS +P R+ S +
Sbjct: 480 RMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR 539
Query: 281 --WSWTPRASTQSAPSRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMST 448
WS R + + SRS+ + R P R + T RS SR PAR+RS T
Sbjct: 540 PGWS-RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 598
Query: 449 SAARPAAQRMRRTRRRHRWMVVSLYHERA-S*GSTESRRRHPAR 577
R + R R R R + R S SR R PAR
Sbjct: 599 PTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Score = 43.1 bits (100), Expect = 0.005
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Frame = +2
Query: 137 TRTSSLRPRSRRLPFTRHLRRSRRRPRLP-------RSRSGTRSLTPSRKSASTTWSWTP 295
T+T+S R RS P R L+RSR R R R RSG+ T R+ S + S
Sbjct: 1753 TKTTSRRGRSPS-PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVT 1811
Query: 296 RAST------QSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAA 457
R +P+R S ++RRR R+ T+ +RS + KRS S A
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPA 1871
Query: 458 RPAAQRMRR---TRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
R R +RRR R + R+ ++ +RRR +R
Sbjct: 1872 THRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Score = 40.8 bits (94), Expect = 0.026
Identities = 49/137 (35%), Positives = 59/137 (42%), Gaps = 10/137 (7%)
Frame = +2
Query: 122 HPRCSTRT---SSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRK-SASTTWSW 289
H R +RT S R RSR P +R RRSR R + R RS +R+ SR+ S S T
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSR--RRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Query: 290 TPRAS-----TQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSA 454
T R S T SRS RR R P + S +R+ R RS S
Sbjct: 1931 TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVT 1990
Query: 455 ARPAAQRMRR-TRRRHR 502
R + R TRRR R
Sbjct: 1991 RRRSRSRTSPVTRRRSR 2007
Score = 40.0 bits (92), Expect = 0.045
Identities = 44/130 (33%), Positives = 57/130 (43%)
Frame = +2
Query: 101 SSYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTT 280
+S T R ++ S R RSR P TR RSR RSRS T +T R
Sbjct: 1904 TSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR---- 1959
Query: 281 WSWTPRASTQSAPSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S TP + + + SR+S TRRR R T +RS + R+RS TS
Sbjct: 1960 -SRTPPVTRRRSRSRTSPI---TRRRSRSRTSPVTR-RRSRSRTSPVTRRRSRSRTS--- 2011
Query: 461 PAAQRMRRTR 490
P +R R+R
Sbjct: 2012 PVTRRRSRSR 2021
Score = 37.0 bits (84), Expect = 0.38
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +2
Query: 104 SYTLLRHPRCSTRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTW 283
S T R R +RT + R RSR R R R R R P R +RS TP R+ S +
Sbjct: 649 SRTPARRGRSRSRTPARRGRSRSRTPAR--RSGRSRSRTPARRGRSRSRTP-RRGRSRSR 705
Query: 284 SWTPRASTQS-APSRSSESC*NTRRRPRRAPCASTACSAARSVSRVPARKRSTMSTSAAR 460
S R + S P R S ++ R+ + + T+ +RS S P K+S +S+ +R
Sbjct: 706 SLVRRGRSHSRTPQRRGRSGSSSERKNK----SRTSQRRSRSNSS-PEMKKSRISSRRSR 760
Query: 461 PAAQRMRRTRRR 496
+ + + R
Sbjct: 761 SLSSPRSKAKSR 772
Score = 37.0 bits (84), Expect = 0.38
Identities = 35/122 (28%), Positives = 48/122 (38%), Gaps = 5/122 (4%)
Frame = +2
Query: 128 RCSTRTSSL---RPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPR 298
R +RTS + R RSR P TR RSR P + R L P ++S S + R
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRR 2052
Query: 299 ASTQSAPSRSSESC*NTRRRP--RRAPCASTACSAARSVSRVPARKRSTMSTSAARPAAQ 472
S P + TR P RR + ++ +RS + R S T +
Sbjct: 2053 RSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSS 2112
Query: 473 RM 478
RM
Sbjct: 2113 RM 2114
Score = 35.8 bits (81), Expect = 0.84
Identities = 45/157 (28%), Positives = 63/157 (39%), Gaps = 10/157 (6%)
Frame = +2
Query: 137 TRTSSLRPRSRRLPFTRHLRRSRRRPRLPRSRSGTRSLTPSRKSASTTWSWTPRASTQSA 316
+R S R RS P + R+ PR++SG+ S + A PR S +
Sbjct: 1589 SRLSPRRSRSGSSPEVKDKPRAA-----PRAQSGSDSSPEPKAPAPRA---LPRRSRSGS 1640
Query: 317 PSR----SSESC*NTRRRPRRAPCASTACSAARSV------SRVPARKRSTMSTSAARPA 466
S+ S E +T P P + TA +RS SR P R+RS+ S+ P
Sbjct: 1641 SSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSS----PE 1696
Query: 467 AQRMRRTRRRHRWMVVSLYHERAS*GSTESRRRHPAR 577
R R RR R++ S E+R R P R
Sbjct: 1697 LTRKARLSRR----------SRSASSSPETRSRTPPR 1723
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = -1
Query: 619 PWMQRTSQGR------HRHLACRVPSTRLG*ASRGPFVVQADDHPSVTPTRPPHPLRRGP 458
P + S GR H H PS R+G SR P + S TPT+ H R P
Sbjct: 457 PTSKNRSHGRAKRDKSHSH----TPSRRMG-RSRSPATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 457 GRARAHGASLSRWHAGNRSCSAARRAGTWRPSRP 356
R+ A RW RS S RR + P RP
Sbjct: 512 QWRRSRSA--QRW---GRSRSPQRRGRSRSPQRP 540
