Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000495A_C01 KCC000495A_c01
(851 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c... 138 2e-54
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c... 70 3e-11
ref|NP_180615.1| photosystem II reaction center 6.1KD protein [A... 69 7e-11
pir||S60662 photosystem II protein psbW - Arabidopsis thaliana g... 68 2e-10
gb|AAL32042.1|AF439283_1 photosystem II reaction center [Retama ... 67 5e-10
>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, chloroplast precursor
gi|5739404|gb|AAD50464.1|AF170026_1 core subunit of
photosystem II precursor [Chlamydomonas reinhardtii]
Length = 115
Score = 138 bits (348), Expect(2) = 2e-54
Identities = 63/64 (98%), Positives = 64/64 (99%)
Frame = +2
Query: 197 VAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADD 376
+AAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADD
Sbjct: 52 LAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADD 111
Query: 377 GLKL 388
GLKL
Sbjct: 112 GLKL 115
Score = 97.4 bits (241), Expect(2) = 2e-54
Identities = 52/56 (92%), Positives = 52/56 (92%)
Frame = +1
Query: 43 MQALSARAPRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATRGCPP 210
MQALSARAPRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPAT P
Sbjct: 1 MQALSARAPRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHP 56
>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplast precursor
(PSII 6.1 kDa protein) gi|1076268|pir||S53025
photosystem II protein psbW - spinach
gi|728716|emb|CAA59409.1| protein of photosystem II
[Spinacia oleracea]
Length = 137
Score = 70.5 bits (171), Expect = 3e-11
Identities = 32/62 (51%), Positives = 46/62 (73%)
Frame = +2
Query: 203 AHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGL 382
++PA ALVDERM+ +GTG PFG+++ +LGW+L GVFG +WA++F+ L ED + GL
Sbjct: 78 SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLE--EDEESGL 135
Query: 383 KL 388
L
Sbjct: 136 SL 137
>ref|NP_180615.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana]
gi|30684638|ref|NP_850149.1| photosystem II reaction
center 6.1KD protein [Arabidopsis thaliana]
gi|25354997|pir||A84710 photosystem II reaction center
6.1KD protein [imported] - Arabidopsis thaliana
gi|1946362|gb|AAB63080.1| photosystem II reaction center
6.1KD protein [Arabidopsis thaliana]
gi|11762232|gb|AAG40394.1|AF325042_1 At2g30570
[Arabidopsis thaliana]
gi|14030715|gb|AAK53032.1|AF375448_1 At2g30570/T6B20.8
[Arabidopsis thaliana] gi|21593002|gb|AAM64951.1|
photosystem II reaction center 6.1KD protein
[Arabidopsis thaliana] gi|23506075|gb|AAN28897.1|
At2g30570/T6B20.8 [Arabidopsis thaliana]
Length = 133
Score = 69.3 bits (168), Expect = 7e-11
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +2
Query: 197 VAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADD 376
V ++PA ALVDERM+ +GTG PFG+++ +LGW+L GVFG +W +F+ L ED +
Sbjct: 72 VMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLE--EDEES 129
Query: 377 GLKL 388
GL L
Sbjct: 130 GLSL 133
>pir||S60662 photosystem II protein psbW - Arabidopsis thaliana
gi|950023|emb|CAA62296.1| component of 6.1 kDa
polypeptide of photosystem II reaction center
[Arabidopsis thaliana]
Length = 133
Score = 67.8 bits (164), Expect = 2e-10
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +2
Query: 197 VAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADD 376
V ++PA ALVDERM+ +GTG PFG+++ +LGW+L GVFG +W +F L ED +
Sbjct: 72 VMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFAYTSSLE--EDEES 129
Query: 377 GLKL 388
GL L
Sbjct: 130 GLSL 133
>gb|AAL32042.1|AF439283_1 photosystem II reaction center [Retama raetam]
Length = 96
Score = 66.6 bits (161), Expect = 5e-10
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = +2
Query: 179 APCRLPVAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGD 358
A C + PA ALVDER++ +GTG PFG+++ +LGW+L VFG +W +FI L
Sbjct: 29 AACAAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFVVFGLIWTFYFIYASSLE- 87
Query: 359 FEDADDGLKL 388
ED + GL L
Sbjct: 88 -EDEESGLSL 96
