KCC000494A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000494A_C01 KCC000494A_c01
CAAGAACCTGCCTTGCTAGTCGTTTATTGATCCTCAAATGAAGTGGGGTGTGGTTGCGGT
GCTGGCCACCCTGGTGGTGGCCGCTTCCGCCAAGGACTACTTCAAGGAGACCTTCGATGG
CTCCTGGGCCGACCGCTGGACCAAGTCCTCTTGGAAGGTTTCTGATGGGTCCGCTGGCGA
GTTCAAGCTGACCGCTGGCAAGTGGTATGGCGACGCTGAGGCCGACAAGGGTATCCAGAC
CGGCCCCGACTCCAAGTTCTTCGCTATTTCCGCGCCTCTGGCCACCGTGTTCGACAACAC
CGGCAAGGACACCGTTGTCCAGTTCTCCGTCAAGCATGAGCAGGACCTGGACTGCGGTGG
TGGCTACATCAAGGTGGTGCCCGCTACCAGCGAGAAGCAGATGGGCGAGTTCGGTGGCGA
CACCCCTTACTCCATCATGTTCGGCCCCGACATCTGCGGCTACTCGACCCGCAAGGTGCA
CGTCATCCTGACCTACAAGGGCAAGAACTACCTGATCAAGAAGGACATCAAGGCGGAGAC
TGACCAGCTGACCCATGTGTACACCCTGGTCATCAAGCCCGACAACACCTACCAGGTTCT
GATTGACCTGAAGGAGGTCGCCTCGGGCTCCCTGTACGAGGACTGGGACATGCTGCCCCC
CAAGACCATCAAGGACCCCAAGGCCTCCAAGCCTGAGGACTGGGACGAGCGTGAGGAGAT
CGCCGACCCCGAGGACAAGAAGCCTGAGGGCTGGGACGACATCCCCGCCACCATTGCCGA
CAAGGACGCCAAGAAGCCCGAGGACTGGGACGACGAGGAGGACGGCACCTGGGAGCCGCC
CATGATCCCCAACCCCGAGTACAAGGGTGAGTGGAAGGCCAAGATGATCAAGAACCCCGC
CTACAAGGGCATCTGGGTCGCCCCCGACATTGACAACCCTGACTACGTCCACGACGACAA
GCTGTACAACTTCAAGGACCTGAAGTTTGTGGGCTTCGAGCTGTGGCAGGTCAAGTCGGG
CTCCATCTTCGACAACATCCTGGTGACTGACGACCTGGAGGCCGCCAAGAAGTTCGCTGA
GGACACCTGGGGCAAGCACAAGGACGAGGAGAAGGCCATGTTTGACAAGGTCAAGAAGGA
AGAGGACGAGAAGAAGGCCAAGGACGCCCCCCCTCCCCCTGTCGACGCTGAGGCCGCCGA
GGAGGAGGACGACGAGTACGAGGACAAGGAGGAGCCCTCCGGCATGGGCTCCATCAAGAT
CCCCAAGGAGGAGGAGGAGTCCGGCCACGACGAGCTGTAAGCGGCTGGCTGCGAGGACTT
CCCTTCCAACGCAGGAAGAAACCAGCAGCTGCCGCGTCAGCAGTGGAGTTGTGGGCGCGC
GCGTGAGCGGCGTTTGTGGAGCGCCAATCACGTGGCTACGGTCGGCTCCTGAGTTGGATT
AGGTGGCATAGTGATGTTAGATCGGACGCGTTAGAAGCAGTCGGGGCATGGTGGGGCTGT
GCCCCTCCGCGGGCACGGGAAGTGCGACACGCCCGGCGGCTGCATGCGGAGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000494A_C01 KCC000494A_c01
         (1555 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9STD3|CRTC_CHLRE Calreticulin precursor gi|5830186|emb|CAB54...   882  0.0
ref|NP_176030.1| calreticulin 1 (CRT1) [Arabidopsis thaliana] gi...   519  e-146
sp|Q38858|CRT2_ARATH Calreticulin 2 precursor                         516  e-145
gb|AAM63796.1| putative calcium-binding protein, calreticulin [A...   513  e-144
gb|AAN60341.1| unknown [Arabidopsis thaliana]                         513  e-144

>sp|Q9STD3|CRTC_CHLRE Calreticulin precursor gi|5830186|emb|CAB54526.1| calreticulin
            [Chlamydomonas reinhardtii]
          Length = 420

 Score =  882 bits (2278), Expect = 0.0
 Identities = 420/420 (100%), Positives = 420/420 (100%)
 Frame = +2

Query: 38   MKWGVVAVLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDA 217
            MKWGVVAVLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDA
Sbjct: 1    MKWGVVAVLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDA 60

Query: 218  EADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEK 397
            EADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEK
Sbjct: 61   EADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEK 120

Query: 398  QMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIK 577
            QMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIK
Sbjct: 121  QMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIK 180

Query: 578  PDNTYQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWD 757
            PDNTYQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWD
Sbjct: 181  PDNTYQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWD 240

Query: 758  DIPATIADKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDN 937
            DIPATIADKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDN
Sbjct: 241  DIPATIADKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDN 300

Query: 938  PDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKA 1117
            PDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKA
Sbjct: 301  PDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKA 360

Query: 1118 MFDKVKKEEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEESGHDEL 1297
            MFDKVKKEEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEESGHDEL
Sbjct: 361  MFDKVKKEEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEESGHDEL 420

>ref|NP_176030.1| calreticulin 1 (CRT1) [Arabidopsis thaliana]
            gi|11131540|sp|O04151|CRT1_ARATH Calreticulin 1 precursor
            gi|25295764|pir||C96605 calreticulin (Crt1) [imported] -
            Arabidopsis thaliana gi|2052379|gb|AAC49695.1|
            calreticulin gi|12321748|gb|AAG50908.1|AC069159_9
            calreticulin (crt1) [Arabidopsis thaliana]
            gi|12323027|gb|AAG51504.1|AC058785_7 calreticulin (Crt1)
            [Arabidopsis thaliana] gi|17065104|gb|AAL32706.1|
            calreticulin (Crt1) [Arabidopsis thaliana]
            gi|30725696|gb|AAP37870.1| At1g56340 [Arabidopsis
            thaliana]
          Length = 425

 Score =  519 bits (1336), Expect = e-146
 Identities = 252/418 (60%), Positives = 301/418 (71%), Gaps = 5/418 (1%)
 Frame = +2

Query: 59   VLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQ 238
            +L  LVV  SA+  F+E F+  W  RW KS WK  D +AGE+K TAG W GDA  DKGIQ
Sbjct: 12   ILFALVVIVSAEVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDAN-DKGIQ 70

Query: 239  TGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGG 418
            T  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++  + +    +FGG
Sbjct: 71   TSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLL--SDDVDQTKFGG 127

Query: 419  DTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQV 598
            DTPYSIMFGPDICGYST+KVH ILTY G N+LIKK++  ETDQLTHVYT V++PD TY +
Sbjct: 128  DTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSI 187

Query: 599  LIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWDDIPATIA 778
            LID  E  +GSLY DWD+LP K IKDP A KPEDWD++E I DPED KP G+DDIP  I 
Sbjct: 188  LIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIP 247

Query: 779  DKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYVHDD 958
            D DAKKPEDWDDEEDG W  P IPNPEY GEWK K IKNPAYKG W AP IDNP++  D 
Sbjct: 248  DTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKAPMIDNPEFKDDP 307

Query: 959  KLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKAMFDKVKK 1138
            +LY F  LK+VG ELWQVKSGS+FDN+LV+DD E AKK AE+TWGKHKD EKA FD+ +K
Sbjct: 308  ELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEK 367

Query: 1139 EEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPK-----EEEESGHDEL 1297
            + +E+++KDAP      E AE++D+E +D +  S     K  +     EE ++ HDEL
Sbjct: 368  KREEEESKDAPAESDAEEEAEDDDNEGDDSDNESKSEETKEAEETKEAEETDAAHDEL 425

>sp|Q38858|CRT2_ARATH Calreticulin 2 precursor
          Length = 424

 Score =  516 bits (1328), Expect = e-145
 Identities = 253/421 (60%), Positives = 301/421 (71%), Gaps = 5/421 (1%)
 Frame = +2

Query: 50   VVAVLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADK 229
            V  +L  LV  ASA   F+E FD  W +RW KS WK  D +AGE+K TAG W GDA  DK
Sbjct: 9    VSLILIGLVAIASAAVIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDAN-DK 67

Query: 230  GIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGE 409
            GIQT  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++    +++  +
Sbjct: 68   GIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQK--K 124

Query: 410  FGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNT 589
            FGGDTPYSIMFGPDICGYST+KVH ILTY G N+LIKKD+  ETDQLTHVYT +++PD T
Sbjct: 125  FGGDTPYSIMFGPDICGYSTKKVHAILTYNGANHLIKKDVPCETDQLTHVYTFILRPDAT 184

Query: 590  YQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWDDIPA 769
            Y +LID  E  +GSLY DWD+LPPK IKDP A KPEDWDE+E I+DPEDKKP+G+DDIP 
Sbjct: 185  YSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPK 244

Query: 770  TIADKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYV 949
             I D D+KKPEDWDDEEDG W  P IPNPEY GEWK K IKNP YKG W AP IDNPD+ 
Sbjct: 245  EIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFK 304

Query: 950  HDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKAMFDK 1129
             D +LY F  LK+VG ELWQVKSGS+FDN+L+ DD + AKK A++TWGK KD EKA FD+
Sbjct: 305  DDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKDAEKAAFDE 364

Query: 1130 VKKEEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEES-----GHDE 1294
             +K+ +E+++KDAP    DAE   E+D+  +D +  S     K    EE S      HDE
Sbjct: 365  AEKKNEEEESKDAPAES-DAEDEPEDDEGGDDSDSESKAEETKSVDSEETSEKDATAHDE 423

Query: 1295 L 1297
            L
Sbjct: 424  L 424

>gb|AAM63796.1| putative calcium-binding protein, calreticulin [Arabidopsis thaliana]
          Length = 424

 Score =  513 bits (1321), Expect = e-144
 Identities = 252/421 (59%), Positives = 300/421 (70%), Gaps = 5/421 (1%)
 Frame = +2

Query: 50   VVAVLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADK 229
            V  +L  LV  ASA   F+E FD  W +RW KS WK  D +AGE+K TAG W GDA  DK
Sbjct: 9    VSLILIGLVAIASAAVIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDAN-DK 67

Query: 230  GIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGE 409
            GIQT  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++    +++  +
Sbjct: 68   GIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQK--K 124

Query: 410  FGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNT 589
            FGGDTPYSIMFGPDICGYST+KVH ILTY   N+LIKKD+  ETDQLTHVYT +++PD T
Sbjct: 125  FGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDAT 184

Query: 590  YQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWDDIPA 769
            Y +LID  E  +GSLY DWD+LPPK IKDP A KPEDWDE+E I+DPEDKKP+G+DDIP 
Sbjct: 185  YSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPK 244

Query: 770  TIADKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYV 949
             I D D+KKPEDWDDEEDG W  P IPNPEY GEWK K IKNP YKG W AP IDNPD+ 
Sbjct: 245  EIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFK 304

Query: 950  HDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKAMFDK 1129
             D +LY F  LK+VG ELWQVKSGS+FDN+L+ DD + AKK A++TWGK KD EKA FD+
Sbjct: 305  DDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKDAEKAAFDE 364

Query: 1130 VKKEEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEES-----GHDE 1294
             +K+ +E+++KDAP    DAE   E+D+  +D +  S     K    EE S      HDE
Sbjct: 365  AEKKNEEEESKDAPAES-DAEDEPEDDEGGDDSDSESKAEETKSEDSEETSEKDATAHDE 423

Query: 1295 L 1297
            L
Sbjct: 424  L 424

>gb|AAN60341.1| unknown [Arabidopsis thaliana]
          Length = 416

 Score =  513 bits (1321), Expect = e-144
 Identities = 248/409 (60%), Positives = 297/409 (71%)
 Frame = +2

Query: 59   VLATLVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQ 238
            +L  LVV  SA+  F+E F+  W  RW KS WK  D +AGE+K TAG W GDA  DKGIQ
Sbjct: 12   ILFALVVIVSAEVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDAN-DKGIQ 70

Query: 239  TGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGG 418
            T  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++  + +    +FGG
Sbjct: 71   TSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLL--SDDVDQTKFGG 127

Query: 419  DTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQV 598
            DTPYSIMFGPDICGYST+KVH ILTY G N+LIKK++  ETDQLTHVYT V++PD TY +
Sbjct: 128  DTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSI 187

Query: 599  LIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADPEDKKPEGWDDIPATIA 778
            LID  E  +GSLY DWD+LP K IKDP A KPEDWD++E I DPED KP G+DDIP  I 
Sbjct: 188  LIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIP 247

Query: 779  DKDAKKPEDWDDEEDGTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYVHDD 958
            D DAKKPEDWDDEEDG W    IPNPEY GEWK K IKNPAYKG W AP IDNP++  D 
Sbjct: 248  DTDAKKPEDWDDEEDGEWIXLTIPNPEYNGEWKPKKIKNPAYKGKWKAPMIDNPEFKDDP 307

Query: 959  KLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKHKDEEKAMFDKVKK 1138
            +LY F  LK+VG ELWQVKSGS+FDN+LV+DD E AKK AE+TWGKHKD EKA FD+ +K
Sbjct: 308  ELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEK 367

Query: 1139 EEDEKKAKDAPPPPVDAEAAEEEDDEYEDKEEPSGMGSIKIPKEEEESG 1285
            + +E+++KDAP      E AE++D+E +D +  S     K  +E +E+G
Sbjct: 368  KREEEESKDAPAESDAEEEAEDDDNEGDDSDNESKSEETKEAEETKEAG 416



EST assemble image


clone accession position
1 CL34c10_r AV394915 1 583
2 LCL038g07_r AV628231 54 234
3 LCL062g10_r AV629656 54 514
4 LC005c12_r AV619221 59 516
5 LC026d03_r AV620750 60 496
6 MX213c02_r BP089744 64 185
7 MX227a03_r BP090648 64 448
8 MX223g02_r BP090422 64 378
9 MXL035b07_r BP095059 90 480
10 LCL062e10_r AV629643 144 359
11 MXL012c09_r BP093705 279 524
12 MX251h01_r BP092268 362 945
13 HCL031h02_r AV641337 611 1039
14 LC031g06_r AV621140 673 1191
15 LC028e08_r AV620915 911 1433
16 LC078a01_r AV624452 966 1436
17 LC027d08_r AV620831 1113 1650




Chlamydomonas reinhardtii
Kazusa DNA Research Institute