Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000492A_C02 KCC000492A_c02
(1032 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S72223 light harvesting complex A protein precursor - Volvo... 311 e-115
pir||S31863 chlorophyll a/b-binding protein type 4, photosystem ... 150 3e-43
pir||S31864 chlorophyll a/b-binding protein type 4, photosystem ... 150 3e-43
pir||S52341 LHCI-680, photosystem I antenna protein - barley gi|... 144 1e-42
ref|NP_084540.1| cDNA sequence BC002118 [Mus musculus] gi|128053... 148 4e-42
>pir||S72223 light harvesting complex A protein precursor - Volvox carteri
gi|732534|gb|AAB40979.1| light harvesting complex a
Length = 264
Score = 311 bits (798), Expect(2) = e-115
Identities = 145/156 (92%), Positives = 152/156 (96%)
Frame = +3
Query: 327 LAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDF 506
LAVAGILVPELL+NIGFSWPGAGVAWYDAGKF+YFAPASSLFGVQMLLFAW E+RRYQDF
Sbjct: 109 LAVAGILVPELLTNIGFSWPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDF 168
Query: 507 VKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGRLAMLAFAG 686
VKPGSANQDPIF+NNKLPDGNEPGYPGGIFDPFGWSKGD+KSLK KEIKNGRLAMLAFAG
Sbjct: 169 VKPGSANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKGDMKSLKTKEIKNGRLAMLAFAG 228
Query: 687 FIGQAYTTGTTPLKNLSTHLADPWSTTVWQNDLARL 794
F QAYTTGTTPLKNL+THLADPW+TTVWQNDLARL
Sbjct: 229 FAAQAYTTGTTPLKNLATHLADPWATTVWQNDLARL 264
Score = 128 bits (321), Expect(2) = e-115
Identities = 66/88 (75%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +1
Query: 10 FLLSPP-AFGVAAKPVSRRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWM 186
F+LS AFGVAAKPVSRRSSVAVKASAVPENVKEAR WIDAWKSK G R A P+
Sbjct: 3 FVLSKSSAFGVAAKPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGALSRTPAFPAGC 62
Query: 187 PGADLPGYLNGTLPGDFGFDPLVPGPGP 270
P A LPGYL+GTLPGDFGFDPL G P
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEP 90
Score = 66.2 bits (160), Expect = 9e-10
Identities = 39/94 (41%), Positives = 48/94 (50%), Gaps = 12/94 (12%)
Frame = +2
Query: 83 RPPCRRTSRRPASGSMPGSPSRA------------APSAMPLCPAGCPALTCPAT*TALC 226
+P RR+S + ++P + A A S P PAGCPA T P
Sbjct: 16 KPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGALSRTPAFPAGCPAATLPGYLDGTL 75
Query: 227 PATSASTPWYLGQDPVKLKWYAQAELMNARFAML 328
P P YLG +P KLKWYAQAEL++ARFAML
Sbjct: 76 PGDFGFDPLYLGAEPSKLKWYAQAELVHARFAML 109
>pir||S31863 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of
light-harvesting complex of photosystem I [Pinus
sylvestris]
Length = 251
Score = 150 bits (379), Expect(2) = 3e-43
Identities = 80/151 (52%), Positives = 101/151 (65%), Gaps = 1/151 (0%)
Frame = +3
Query: 327 LAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQD 503
L VAG+L+PE+L++IG + P WYDAGK EYFA +S+LF ++ +LF +VE+RR+QD
Sbjct: 103 LGVAGMLIPEVLTSIGLINVP----KWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQD 158
Query: 504 FVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGRLAMLAFA 683
PGS NQDP+F LP NE GYPGGIF+P +S K KE+ NGRLAMLAF
Sbjct: 159 IKYPGSVNQDPLFKQYSLPP-NEVGYPGGIFNPLNFSPS--MEAKEKELANGRLAMLAFL 215
Query: 684 GFIGQAYTTGTTPLKNLSTHLADPWSTTVWQ 776
GF+ Q TG P NL HL+DPW T+ Q
Sbjct: 216 GFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQ 246
Score = 48.1 bits (113), Expect(2) = 3e-43
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +2
Query: 98 RTSRRPASGSMPGSPSRAAPSAMPLCPAGCPALTCPAT*TALCPATSASTPWYLGQDPVK 277
R +RR GS P +P+R+ + P L+ P+ P + P L +DP
Sbjct: 30 RLARRVRPGSNP-APARSFK--VEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPES 86
Query: 278 LKWYAQAELMNARFAMLG 331
LKWY QAEL+N R+AMLG
Sbjct: 87 LKWYVQAELVNGRWAMLG 104
>pir||S31864 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
(fragment) gi|829287|emb|CAA78901.1| Lhca4 protein,Type
4 protein of light-harvesting complex of photosystem I
[Pinus sylvestris]
Length = 244
Score = 150 bits (379), Expect(2) = 3e-43
Identities = 80/151 (52%), Positives = 101/151 (65%), Gaps = 1/151 (0%)
Frame = +3
Query: 327 LAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQD 503
L VAG+L+PE+L++IG + P WYDAGK EYFA +S+LF ++ +LF +VE+RR+QD
Sbjct: 96 LGVAGMLIPEVLTSIGLINVP----KWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQD 151
Query: 504 FVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGRLAMLAFA 683
PGS NQDP+F LP NE GYPGGIF+P +S K KE+ NGRLAMLAF
Sbjct: 152 IKYPGSVNQDPLFKQYSLPP-NEVGYPGGIFNPLNFSPS--MEAKEKELANGRLAMLAFL 208
Query: 684 GFIGQAYTTGTTPLKNLSTHLADPWSTTVWQ 776
GF+ Q TG P NL HL+DPW T+ Q
Sbjct: 209 GFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQ 239
Score = 48.1 bits (113), Expect(2) = 3e-43
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +2
Query: 98 RTSRRPASGSMPGSPSRAAPSAMPLCPAGCPALTCPAT*TALCPATSASTPWYLGQDPVK 277
R +RR GS P +P+R+ + P L+ P+ P + P L +DP
Sbjct: 23 RLARRVRPGSNP-APARSFK--VEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPES 79
Query: 278 LKWYAQAELMNARFAMLG 331
LKWY QAEL+N R+AMLG
Sbjct: 80 LKWYVQAELVNGRWAMLG 97
>pir||S52341 LHCI-680, photosystem I antenna protein - barley
gi|666054|emb|CAA59049.1| LHCI-680, photosystem I
antenna protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 144 bits (362), Expect(2) = 1e-42
Identities = 79/155 (50%), Positives = 100/155 (63%), Gaps = 5/155 (3%)
Frame = +3
Query: 327 LAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQD 503
L AGI +PELL+ IG + P +WY AG+ EYF ++LF V+++L W E RR+ D
Sbjct: 101 LGAAGIFIPELLTKIGILNTP----SWYTAGEQEYFTDTTTLFIVELILIGWAEGRRWAD 156
Query: 504 FVKPGSANQDPIFTNNKLPDGNEPGYPGGI-FDPFGWSKGD---IKSLKLKEIKNGRLAM 671
+KPG N DPIF NNKL G + GYPGG+ FDP G+ G +K L+ KEIKNGRLAM
Sbjct: 157 IIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLAM 215
Query: 672 LAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTVWQ 776
LA G QA TGT P+ NL HLADP T+++
Sbjct: 216 LAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFR 250
Score = 53.1 bits (126), Expect(2) = 1e-42
Identities = 37/96 (38%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 47 SPSPAARASPSRRPPCRRTSRRPASGSMPGS-PSRAAPSAMPLCPAGCPALTCPAT*TAL 223
S + A A PS RTS A+G S S A +A P P P T P
Sbjct: 7 SSATAVAALPSNGLAGARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGS 66
Query: 224 CPATSASTPWYLGQDPVKLKWYAQAELMNARFAMLG 331
P PW LG DP L+W QAEL++ R+AMLG
Sbjct: 67 LPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 102
>ref|NP_084540.1| cDNA sequence BC002118 [Mus musculus] gi|12805303|gb|AAH02118.1|
CDNA sequence BC002118 [Mus musculus]
gi|33438474|emb|CAE30280.1| chlorophyll a /b binding
protein [Beta vulgaris]
Length = 252
Score = 148 bits (373), Expect(2) = 4e-42
Identities = 81/151 (53%), Positives = 99/151 (64%), Gaps = 1/151 (0%)
Frame = +3
Query: 327 LAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQD 503
L VAG+L+PE+ + IG + P WYDAGK EYFA +S+LF ++ +LF +VEIRR+QD
Sbjct: 104 LGVAGMLLPEVFTQIGIINVP----KWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQD 159
Query: 504 FVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGRLAMLAFA 683
PGS NQDPIF LP NE GYPGGIF+P ++ K KE+ NGRLAMLAF
Sbjct: 160 IKNPGSVNQDPIFKQYSLPP-NEVGYPGGIFNPLNFA--PTAEAKEKELANGRLAMLAFL 216
Query: 684 GFIGQAYTTGTTPLKNLSTHLADPWSTTVWQ 776
GFI Q TG P NL HL+DPW T+ Q
Sbjct: 217 GFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQ 247
Score = 47.0 bits (110), Expect(2) = 4e-42
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 139 SKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLVPGPGP 270
S + K +A W+PG P YLNG+LPGD GFDPL P
Sbjct: 42 SSTNSLKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDP 85
Score = 46.6 bits (109), Expect = 7e-04
Identities = 22/48 (45%), Positives = 27/48 (55%)
Frame = +2
Query: 188 PALTCPAT*TALCPATSASTPWYLGQDPVKLKWYAQAELMNARFAMLG 331
P L PA P + P L +DP LKW+ QAEL+N R+AMLG
Sbjct: 58 PGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLG 105
