KCC000489A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000489A_C01 KCC000489A_c01
CGAGGCCTTCGTCGCGCGACTCTCCGAGCGCGGCGACGTCGAGTTGGATTCCTCCCTTCT
TGAGGGCATTCGCCAGCACTTTGACCGGCTCCCTACTAGATATGCTCTAGATGTGAACGT
GGACGGCCTGGACGTGCTCAGCCACAAGCGGCTATTAGATGAGGCCCGGGCCGACCCCAC
CACGGTGTCATTTGCGGTCCGGCCGGTAGAAATAGTCGGCCCGCGGGCTGATGGTGTATC
TTCTCCCCACGAGGTATGCGTGGGCAGCACGTCTGAGTCGGAAGTACACCTCTGACTCGT
TCCTCCGCCCGTTGCAGCTCACCCGGGCAAACTCCAAGAAACTAGGCCAGCTTTGCCGGC
CAGCGTTCGGCTCCTCGCCGAACCTCCAGGCGCTGGCGCTCGAAGTCGGGGAGCGGGCCG
AAGGACACGAGGCCGAGGCATCTTCTGGGCCAGGGCCGCGCGAGGAGCACACCGGTGTTC
TATGAAATCACTATAGCGTCGGTCGACCAGCCAAAGCTGCTCAGCCGACTTTCGGAGGCG
CTGGGGGACTTGGGGCTTAACATCCGGGAAGCGCACGCCTTCAACACGAACGACAGCTTC
TCGTTGGACGTGTTCGTTGTGGATCAATGGCAGCCCCAGCCCGGGCAAAATCTCGAAGAG
CTGCTGGGGCAGCGGCTGCTCCAGATGCCGCCGCCGCCTCCCAAGGGAGGGGCGGCACAA
CAACAGCAAGCGGTAGCAGCGGGGCCCGCGCCGGCGCTGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000489A_C01 KCC000489A_c01
         (762 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC79157.1| putative serine/threonine-protein kinase ctr1 [O...    76  6e-27
ref|NP_195303.2| protein kinase family [Arabidopsis thaliana] gi...    81  1e-25
ref|NP_179361.1| protein kinase family [Arabidopsis thaliana] gi...    85  1e-25
pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thalian...    76  4e-24
pir||T04688 hypothetical protein F4B14.50 - Arabidopsis thaliana       76  4e-24

>dbj|BAC79157.1| putative serine/threonine-protein kinase ctr1 [Oryza sativa
           (japonica cultivar-group)]
          Length = 603

 Score = 76.3 bits (186), Expect(3) = 6e-27
 Identities = 35/60 (58%), Positives = 48/60 (79%)
 Frame = +1

Query: 481 YEITIASVDQPKLLSRLSEALGDLGLNIREAHAFNTNDSFSLDVFVVDQWQPQPGQNLEE 660
           +EIT +++D+PKLLS L+  LG+LGLNI+EAHAF+TND +SLDVFVV  W  +  ++L E
Sbjct: 207 HEITFSTIDKPKLLSELTSLLGELGLNIQEAHAFSTNDGYSLDVFVVVGWHDEETEDLIE 266

 Score = 55.8 bits (133), Expect(3) = 6e-27
 Identities = 36/84 (42%), Positives = 51/84 (59%), Gaps = 1/84 (1%)
 Frame = +2

Query: 77  HFDRLPTRYALDVNVD-GLDVLSHKRLLDEARADPTTVSFAVRPVEIVGPRADGVSSPHE 253
           HF+RLP RYA+DVNV+   DVL+HKRLL++A+      +FAVR V+ V P  DG  +  +
Sbjct: 90  HFNRLPARYAMDVNVERAEDVLTHKRLLEQAKDPAQRPAFAVRAVQ-VSPILDGNQTDAD 148

Query: 254 VCVGSTSESEVHL*LVPPPVAAHP 325
               +T+  EV   L+    + HP
Sbjct: 149 ---SNTAGEEVASRLLNRQQSIHP 169

 Score = 31.6 bits (70), Expect(3) = 6e-27
 Identities = 15/29 (51%), Positives = 23/29 (78%)
 Frame = +3

Query: 360 PAFGSSPNLQALALEVGERAEGHEAEASS 446
           PAFGSS NL+ALALE   +++G + +++S
Sbjct: 171 PAFGSSTNLEALALE-ASKSQGQDHDSTS 198

>ref|NP_195303.2| protein kinase family [Arabidopsis thaliana]
           gi|20260236|gb|AAM13016.1| putative protein [Arabidopsis
           thaliana] gi|22136520|gb|AAM91338.1| putative protein
           [Arabidopsis thaliana]
          Length = 570

 Score = 80.9 bits (198), Expect(3) = 1e-25
 Identities = 37/73 (50%), Positives = 54/73 (73%)
 Frame = +1

Query: 481 YEITIASVDQPKLLSRLSEALGDLGLNIREAHAFNTNDSFSLDVFVVDQWQPQPGQNLEE 660
           +EIT +++D+PKLLS+L+  LG+LGLNI+EAHAF+T D FSLDVFVVD W  +  + L++
Sbjct: 179 HEITFSTIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKD 238

Query: 661 LLGQRLLQMPPPP 699
            L + + +    P
Sbjct: 239 ALKKEIRKFKDQP 251

 Score = 51.2 bits (121), Expect(3) = 1e-25
 Identities = 35/82 (42%), Positives = 46/82 (55%), Gaps = 4/82 (4%)
 Frame = +2

Query: 77  HFDRLPTRYALDVNVD-GLDVLSHKRLLDEARADPTTVSFAVRPVEIVGPRADGVS---S 244
           HF+RLP RYALDVNV+   DVL+H+RLL  A    T   F VR V+ V P  +G S    
Sbjct: 62  HFNRLPARYALDVNVERAEDVLTHQRLLKLAEDPATRPVFEVRCVQ-VSPTLNGNSGDVD 120

Query: 245 PHEVCVGSTSESEVHL*LVPPP 310
           P +  V   ++S  +   + PP
Sbjct: 121 PSDPAVNEDAQSSYNSRSLAPP 142

 Score = 26.9 bits (58), Expect(3) = 1e-25
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 351 LCRPAFGSSPNLQALALEVGERAEGHEAEASSG-PGPREEH 470
           L  P FGSSPN +AL     + A+  ++  ++  P  R  H
Sbjct: 139 LAPPTFGSSPNFEALTQAYKDHAQDDDSAVNAQLPNSRPMH 179

>ref|NP_179361.1| protein kinase family [Arabidopsis thaliana]
           gi|25411811|pir||D84555 probable protein kinase
           [imported] - Arabidopsis thaliana
           gi|17979171|gb|AAL49781.1| putative protein kinase
           [Arabidopsis thaliana] gi|20465915|gb|AAM20110.1|
           putative protein kinase [Arabidopsis thaliana]
          Length = 546

 Score = 85.1 bits (209), Expect(3) = 1e-25
 Identities = 40/78 (51%), Positives = 56/78 (71%)
 Frame = +1

Query: 466 STPVFYEITIASVDQPKLLSRLSEALGDLGLNIREAHAFNTNDSFSLDVFVVDQWQPQPG 645
           ST   +EIT +++D+PKLLS+L+  LG+LGLNI+EAHAF+T D FSLDVFVVD W  +  
Sbjct: 168 STRPMHEITFSTIDKPKLLSQLTSLLGELGLNIQEAHAFSTVDGFSLDVFVVDGWSQEET 227

Query: 646 QNLEELLGQRLLQMPPPP 699
             L + L + +L++   P
Sbjct: 228 DGLRDALSKEILKLKDQP 245

 Score = 48.5 bits (114), Expect(3) = 1e-25
 Identities = 30/58 (51%), Positives = 35/58 (59%), Gaps = 1/58 (1%)
 Frame = +2

Query: 77  HFDRLPTRYALDVNVD-GLDVLSHKRLLDEARADPTTVSFAVRPVEIVGPRADGVSSP 247
           HF+RLP RYALDV V+   DVL+H+RLL  A    T   F VR V+ V PR    S P
Sbjct: 61  HFNRLPARYALDVKVERAEDVLTHQRLLKLAADPATRPVFEVRSVQ-VSPRISADSDP 117

 Score = 25.4 bits (54), Expect(3) = 1e-25
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = +3

Query: 345 GQLCRPAFGSSPNLQAL 395
           G L  P FGSSPN +A+
Sbjct: 133 GVLAPPTFGSSPNFEAI 149

>pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thaliana
           gi|3367596|emb|CAA20048.1| putative protein [Arabidopsis
           thaliana] gi|7270530|emb|CAB81487.1| putative protein
           [Arabidopsis thaliana]
          Length = 553

 Score = 75.9 bits (185), Expect(3) = 4e-24
 Identities = 34/53 (64%), Positives = 45/53 (84%)
 Frame = +1

Query: 481 YEITIASVDQPKLLSRLSEALGDLGLNIREAHAFNTNDSFSLDVFVVDQWQPQ 639
           +EIT +++D+PKLLS+L+  LG+LGLNI+EAHAF+T D FSLDVFVVD W  +
Sbjct: 179 HEITFSTIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQE 231

 Score = 51.2 bits (121), Expect(3) = 4e-24
 Identities = 35/82 (42%), Positives = 46/82 (55%), Gaps = 4/82 (4%)
 Frame = +2

Query: 77  HFDRLPTRYALDVNVD-GLDVLSHKRLLDEARADPTTVSFAVRPVEIVGPRADGVS---S 244
           HF+RLP RYALDVNV+   DVL+H+RLL  A    T   F VR V+ V P  +G S    
Sbjct: 62  HFNRLPARYALDVNVERAEDVLTHQRLLKLAEDPATRPVFEVRCVQ-VSPTLNGNSGDVD 120

Query: 245 PHEVCVGSTSESEVHL*LVPPP 310
           P +  V   ++S  +   + PP
Sbjct: 121 PSDPAVNEDAQSSYNSRSLAPP 142

 Score = 26.9 bits (58), Expect(3) = 4e-24
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 351 LCRPAFGSSPNLQALALEVGERAEGHEAEASSG-PGPREEH 470
           L  P FGSSPN +AL     + A+  ++  ++  P  R  H
Sbjct: 139 LAPPTFGSSPNFEALTQAYKDHAQDDDSAVNAQLPNSRPMH 179

>pir||T04688 hypothetical protein F4B14.50 - Arabidopsis thaliana
          Length = 509

 Score = 75.9 bits (185), Expect(3) = 4e-24
 Identities = 34/53 (64%), Positives = 45/53 (84%)
 Frame = +1

Query: 481 YEITIASVDQPKLLSRLSEALGDLGLNIREAHAFNTNDSFSLDVFVVDQWQPQ 639
           +EIT +++D+PKLLS+L+  LG+LGLNI+EAHAF+T D FSLDVFVVD W  +
Sbjct: 179 HEITFSTIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQE 231

 Score = 51.2 bits (121), Expect(3) = 4e-24
 Identities = 35/82 (42%), Positives = 46/82 (55%), Gaps = 4/82 (4%)
 Frame = +2

Query: 77  HFDRLPTRYALDVNVD-GLDVLSHKRLLDEARADPTTVSFAVRPVEIVGPRADGVS---S 244
           HF+RLP RYALDVNV+   DVL+H+RLL  A    T   F VR V+ V P  +G S    
Sbjct: 62  HFNRLPARYALDVNVERAEDVLTHQRLLKLAEDPATRPVFEVRCVQ-VSPTLNGNSGDVD 120

Query: 245 PHEVCVGSTSESEVHL*LVPPP 310
           P +  V   ++S  +   + PP
Sbjct: 121 PSDPAVNEDAQSSYNSRSLAPP 142

 Score = 26.9 bits (58), Expect(3) = 4e-24
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 351 LCRPAFGSSPNLQALALEVGERAEGHEAEASSG-PGPREEH 470
           L  P FGSSPN +AL     + A+  ++  ++  P  R  H
Sbjct: 139 LAPPTFGSSPNFEALTQAYKDHAQDDDSAVNAQLPNSRPMH 179



EST assemble image


clone accession position
1 LCL058g06_r AV629439 1 456
2 CL39h02_r AV395189 236 762




Chlamydomonas reinhardtii
Kazusa DNA Research Institute