Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000485A_C01 KCC000485A_c01
(565 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_326457.1| predicted protein [Neurospora crassa] gi|289239... 53 2e-06
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 52 7e-06
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 51 1e-05
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 49 4e-05
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 49 4e-05
>ref|XP_326457.1| predicted protein [Neurospora crassa] gi|28923948|gb|EAA33108.1|
predicted protein [Neurospora crassa]
Length = 517
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 TSQSPAGTAGTAPPSSTSSGHNTAAVVGGVVGGVCGAILVGVAVGAFLWRRRQRQNSLAQ 405
T+ + T APPS TS+G T A+VGG +GG+ L+G + FL RRR +
Sbjct: 259 TASTEPSTTPQAPPSKTSTGARTGAIVGGTLGGIAALALIGALILYFLRRRRSANSRTGP 318
Query: 406 -HPGGDAGGAKDPSAGPYLVAVADSSHDDVSAGG 504
PG + P+ GP A S D G
Sbjct: 319 GRPGINGKYISSPTPGPNSGFAAVSQDPDAYETG 352
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 51.6 bits (122), Expect = 7e-06
Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = -1
Query: 547 SSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRR-RGPLRRRRRRRDAVRGSSGAAAGA 371
S PRRR PR RP RR R + PP R RR R P+RRRRR ++ GSS +++ +
Sbjct: 308 SYSPRRRPSPRRRPSPRR--RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSS 365
Query: 370 TGTRQPPRPPGWRRTHLLPR--RQLQRRCCDPTKSKTEEP 257
P +PP +RT PR R+L P + P
Sbjct: 366 RSRSPPKKPP--KRTSSPPRKTRRLSPSASPPRRRHRPSP 403
Score = 37.7 bits (86), Expect = 0.11
Identities = 55/182 (30%), Positives = 63/182 (34%), Gaps = 11/182 (6%)
Frame = -1
Query: 547 SSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGAAAGAT 368
S + RRRR P P P R RR P PP R R P RRR
Sbjct: 541 SPRGRRRRSPSPPPTR---RRRSPSPAPPPRRRRTPTPPPRRR----------------- 580
Query: 367 GTRQPPRPPGWRRTHLLPRR---QLQRRC--CDPTKSKTEEPCLQCLPATGWSAAACRRP 203
P PP RR+ PRR +QRR P K +T P S RR
Sbjct: 581 ----TPSPPPRRRSP-SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRV 635
Query: 202 SCCSSPRCPGVPRTRR*SCRHTRKAPCGSAVCSLLSAASVT------CPSPRRRCPGHHK 41
S P+ P T+R S + K GS+ A PSPR R P
Sbjct: 636 SHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSS 695
Query: 40 HP 35
P
Sbjct: 696 SP 697
Score = 37.0 bits (84), Expect = 0.18
Identities = 35/95 (36%), Positives = 40/95 (41%)
Frame = -1
Query: 565 APTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSG 386
+P+PP + RRRR P P P RR R P PP RRR P RRR + R S
Sbjct: 549 SPSPPPT---RRRRSPSPAPPPRRRRT----PTPPP---RRRTPSPPPRRRSPSPRRYSP 598
Query: 385 AAAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDP 281
R P PP RRT P +R P
Sbjct: 599 PIQ----RRYSPSPPPKRRTASPPPPPKRRASPSP 629
Score = 33.9 bits (76), Expect = 1.6
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 5/141 (3%)
Frame = -1
Query: 565 APTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSG 386
+P PP PRRRR P P P RR P PP RRR P RR R S
Sbjct: 562 SPAPP----PRRRRTPTPPPRRRT-------PSPPP---RRRSP-SPRRYSPPIQRRYSP 606
Query: 385 AAAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDPTK-----SKTEEPCLQCLPATGWSA 221
+ T PP PP R + P ++ P + +K P L G S
Sbjct: 607 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSP 666
Query: 220 AACRRPSCCSSPRCPGVPRTR 158
+ R + P P R
Sbjct: 667 SRSTREARSPQPNKRHSPSPR 687
Score = 32.0 bits (71), Expect = 5.9
Identities = 24/64 (37%), Positives = 27/64 (41%)
Frame = -3
Query: 512 PPSPPALTSSWLLSATATR*GPAEGSFAPPASPPGCCAREFWRCRRRHRNAPTATPTRMA 333
P PP TSS TR +P ASPP RRRHR +P ATP
Sbjct: 371 PKKPPKRTSS---PPRKTR------RLSPSASPP----------RRRHRPSPPATPPPKT 411
Query: 332 PHTP 321
H+P
Sbjct: 412 RHSP 415
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 50.8 bits (120), Expect = 1e-05
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = -1
Query: 538 PRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRR-RGPLRRRRRRRDAVRGSSGAAAGATGT 362
PRRR PR RP RR R + PP R RR R P+RRRRR ++ GSS +++ +
Sbjct: 310 PRRRPSPRRRPSPRR--RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSR 367
Query: 361 RQPPRPPGWRRTHLLPR--RQLQRRCCDPTKSKTEEP 257
P +PP +RT PR R+L P + P
Sbjct: 368 SPPKKPP--KRTSSPPRKTRRLSPSASPPRRRHRPSP 402
Score = 37.7 bits (86), Expect = 0.11
Identities = 55/182 (30%), Positives = 63/182 (34%), Gaps = 11/182 (6%)
Frame = -1
Query: 547 SSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGAAAGAT 368
S + RRRR P P P R RR P PP R R P RRR
Sbjct: 539 SPRGRRRRSPSPPPTR---RRRSPSPAPPPRRRRTPTPPPRRR----------------- 578
Query: 367 GTRQPPRPPGWRRTHLLPRR---QLQRRC--CDPTKSKTEEPCLQCLPATGWSAAACRRP 203
P PP RR+ PRR +QRR P K +T P S RR
Sbjct: 579 ----TPSPPPRRRSP-SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRV 633
Query: 202 SCCSSPRCPGVPRTRR*SCRHTRKAPCGSAVCSLLSAASVT------CPSPRRRCPGHHK 41
S P+ P T+R S + K GS+ A PSPR R P
Sbjct: 634 SHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSS 693
Query: 40 HP 35
P
Sbjct: 694 SP 695
Score = 37.0 bits (84), Expect = 0.18
Identities = 35/95 (36%), Positives = 40/95 (41%)
Frame = -1
Query: 565 APTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSG 386
+P+PP + RRRR P P P RR R P PP RRR P RRR + R S
Sbjct: 547 SPSPPPT---RRRRSPSPAPPPRRRRT----PTPPP---RRRTPSPPPRRRSPSPRRYSP 596
Query: 385 AAAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDP 281
R P PP RRT P +R P
Sbjct: 597 PIQ----RRYSPSPPPKRRTASPPPPPKRRASPSP 627
Score = 33.9 bits (76), Expect = 1.6
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 5/141 (3%)
Frame = -1
Query: 565 APTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSG 386
+P PP PRRRR P P P RR P PP RRR P RR R S
Sbjct: 560 SPAPP----PRRRRTPTPPPRRRT-------PSPPP---RRRSP-SPRRYSPPIQRRYSP 604
Query: 385 AAAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDPTK-----SKTEEPCLQCLPATGWSA 221
+ T PP PP R + P ++ P + +K P L G S
Sbjct: 605 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSP 664
Query: 220 AACRRPSCCSSPRCPGVPRTR 158
+ R + P P R
Sbjct: 665 SRSTREARSPQPNKRHSPSPR 685
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 49.3 bits (116), Expect = 4e-05
Identities = 34/81 (41%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
Frame = -1
Query: 547 SSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRR-RGPLRRRRRRRDAVRGSSGAAAGA 371
S PRRR PR RP RR R + PP R RR R P RRRRR ++ GSS +++ +
Sbjct: 306 SYSPRRRPSPRRRPSPRR--RTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSS 363
Query: 370 TGTRQPPRPPGWRRTHLLPRR 308
P +PP +RT PR+
Sbjct: 364 RSRSPPKKPP--KRTSSPPRK 382
Score = 41.2 bits (95), Expect = 0.010
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 6/141 (4%)
Frame = -1
Query: 562 PTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGR-----GRRRGPLRRRRRRRDAVR 398
P PP PRRRR P P P RR P PP R R P++RR +
Sbjct: 578 PPPPPPPPPRRRRSPTPPPRRRT-------PSPPPRRRSPSPRRYSPPIQRRYSPSPPPK 630
Query: 397 GSSGAAAGATGTRQPPRPPGWRR-THLLPRRQLQRRCCDPTKSKTEEPCLQCLPATGWSA 221
+ + R P PP RR +H P +Q PT +K P L G S
Sbjct: 631 RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQR-----SPTVTKRRSPSLSSKHRKGSSP 685
Query: 220 AACRRPSCCSSPRCPGVPRTR 158
R + P P R
Sbjct: 686 GRSTREARSPQPNKRHSPSPR 706
Score = 36.2 bits (82), Expect = 0.32
Identities = 55/178 (30%), Positives = 65/178 (35%), Gaps = 11/178 (6%)
Frame = -1
Query: 553 PESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGAAAG 374
P + RRRR P P P RRR P PP P RRRR R
Sbjct: 551 PVTKSSRRRRSPSPPPARRRRSPSPAPPPPPP-----PPPPRRRRSPTPPPR-------- 597
Query: 373 ATGTRQPPRPPGWRRTHLLPRR---QLQRRC--CDPTKSKTEEPCLQCLPATGWSAAACR 209
R+ P PP RR+ PRR +QRR P K +T P S R
Sbjct: 598 ----RRTPSPPPRRRSP-SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 652
Query: 208 RPSCCSSP--RCPGVPRTR--R*SCRHTRKAPCGSAVCSLLSAA--SVTCPSPRRRCP 53
R S P R P V + R S +H + + G + S PSPR R P
Sbjct: 653 RVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAP 710
Score = 32.3 bits (72), Expect = 4.6
Identities = 40/168 (23%), Positives = 57/168 (33%)
Frame = -1
Query: 562 PTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGA 383
P+P ++SK + + RPR R R R R R P R RRR R S +
Sbjct: 259 PSPEKNSKKEKEK-TRPRSRSRSKSR---------SRTRSRSPSHTRPRRRHRSRSRSYS 308
Query: 382 AAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDPTKSKTEEPCLQCLPATGWSAAACRRP 203
R+ P P +P RR P + + ++ S++ R P
Sbjct: 309 PRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSP 368
Query: 202 SCCSSPRCPGVPRTRR*SCRHTRKAPCGSAVCSLLSAASVTCPSPRRR 59
R PR R R +P S +S P P+ R
Sbjct: 369 PKKPPKRTSSPPRKTR------RLSPSASPPRRRHRPSSPATPPPKTR 410
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 49.3 bits (116), Expect = 4e-05
Identities = 34/81 (41%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
Frame = -1
Query: 547 SSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRR-RGPLRRRRRRRDAVRGSSGAAAGA 371
S PRRR PR RP RR R + PP R RR R P RRRRR ++ GSS +++ +
Sbjct: 365 SYSPRRRPSPRRRPSPRR--RTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSS 422
Query: 370 TGTRQPPRPPGWRRTHLLPRR 308
P +PP +RT PR+
Sbjct: 423 RSRSPPKKPP--KRTSSPPRK 441
Score = 40.4 bits (93), Expect = 0.017
Identities = 41/142 (28%), Positives = 50/142 (34%), Gaps = 6/142 (4%)
Frame = -1
Query: 565 APTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGR-----GRRRGPLRRRRRRRDAV 401
AP PP PRRRR P P P RR P PP R R P++RR
Sbjct: 612 APPPPPPPPPRRRRSPTPPPRRRT-------PSPPPRRRSPSPRRYSPPIQRRYSPSPPP 664
Query: 400 RGSSGAAAGATGTRQPPRPPGWRR-THLLPRRQLQRRCCDPTKSKTEEPCLQCLPATGWS 224
+ + + R P PP RR +H P +Q P +K P L G S
Sbjct: 665 KRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQR-----SPPVTKRRSPSLSSKHRKGSS 719
Query: 223 AAACRRPSCCSSPRCPGVPRTR 158
R + P P R
Sbjct: 720 PGRSTREARSPQPNKRHSPSPR 741
Score = 39.3 bits (90), Expect = 0.037
Identities = 55/177 (31%), Positives = 66/177 (37%), Gaps = 11/177 (6%)
Frame = -1
Query: 550 ESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGAAAGA 371
E+S RRRR P P P RRR P PP P RRRR R
Sbjct: 588 ETSPRRRRRSPSPPPARRRRSPSPAPPPPPP------PPPRRRRSPTPPPR--------- 632
Query: 370 TGTRQPPRPPGWRRTHLLPRR---QLQRRC--CDPTKSKTEEPCLQCLPATGWSAAACRR 206
R+ P PP RR+ PRR +QRR P K +T P S RR
Sbjct: 633 ---RRTPSPPPRRRSP-SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRR 688
Query: 205 PSCCSSPRCPGVPRTRR----*SCRHTRKAPCGSAVCSLLSAA--SVTCPSPRRRCP 53
S P+ P T+R S +H + + G + S PSPR R P
Sbjct: 689 VSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAP 745
Score = 32.3 bits (72), Expect = 4.6
Identities = 40/168 (23%), Positives = 57/168 (33%)
Frame = -1
Query: 562 PTPPESSKPRRRRGPRPRPVRRR*RRHGCYPLLPPGRGRRRGPLRRRRRRRDAVRGSSGA 383
P+P ++SK + + RPR R R R R R P R RRR R S +
Sbjct: 318 PSPEKNSKKEKEK-TRPRSRSRSKSR---------SRTRSRSPSHTRPRRRHRSRSRSYS 367
Query: 382 AAGATGTRQPPRPPGWRRTHLLPRRQLQRRCCDPTKSKTEEPCLQCLPATGWSAAACRRP 203
R+ P P +P RR P + + ++ S++ R P
Sbjct: 368 PRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSP 427
Query: 202 SCCSSPRCPGVPRTRR*SCRHTRKAPCGSAVCSLLSAASVTCPSPRRR 59
R PR R R +P S +S P P+ R
Sbjct: 428 PKKPPKRTSSPPRKTR------RLSPSASPPRRRHRPSSPATPPPKTR 469
