KCC000480A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000480A_C01 KCC000480A_c01
cggcgaccagactctgggtctgcacagatggatggctgggggacgctgaaacgcgtttct
gttcaacgcaaatgccacttGCCATGAGCAACACGGTCGGTCAGGGCCGGAATGCCGGAT
AAGCCCACTCGCATAATGTATTCATTGTGATCCACCTGCTTCAGCACAGCGTACCGTGCA
TGAGCGGCTTACGTGTAGCCGCGCATCGACTCTGTATACCCACACTATCTATGTGCCGTC
AGCATAAGGGGCGCTGTTGCAAGCACCTGAATGGGCACGAAATATCTGTCTAGCAGTATG
AACTCGCTCCCACACAACAATCTTGGCAAAATCACACAGTACGCATGCTCAGTCAAGTCT
CTTTCAGTCAGACAGTGGTTCAGCAACACTTGCGGCACAGAAGCGCCCTCCCATCCTGCA
CTGGACTATCACACGCGCCTTAAACATATACAATCACACAGCCATGTCCTGTTCGGGTCG
TCCAGTCAAAATGCACACACCGCGCGCTAGTGACACCTTACACCTTTCAGTGCCCGGGCG
CCAGCCCGCCGATCTGCTGCACCAGCTCCACACACCCAGTGCCCAACTCCACCACACGGC
CCACACACAGCCGCGCCGCGGGGCTCTTCAGGTCGTCCACGCTGCCGCGCAGGGTGGCGT
CCGTGAGGAAGTGCGCCGCAGTCTCAAATGACATCTTCAGGAAGGGCGACACGCTGGATT
CGATGCCGATGCGGTTGCAGGCGCGGTAGCCGCCCTGGTGCGTCATGAAGTCGGCAATGA
GCGACAGGTGGCGCGGGTCCACGCCGATGCCGTAGGCGCTGAACACGCTCTGCACCTCGC
GCATGATGGTCGCGCGCGCCGCCTCCACACCGTACGTCACTAGCATAGCGTGCACGTCGT
TGGTTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000480A_C01 KCC000480A_c01
         (908 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_596300.1| dna-directed rna polymerase i 190 kd polypeptid...   152  1e-35
emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]   150  2e-35
ref|NP_033114.2| RNA polymerase 1-4; RNA polymerase 1-4 (194 kDa...   134  2e-30
sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I largest subun...   134  2e-30
gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus...   134  2e-30

>ref|NP_596300.1| dna-directed rna polymerase i 190 kd polypeptide [Schizosaccharomyces
            pombe] gi|3334489|sp|P15398|RPA1_SCHPO DNA-directed RNA
            polymerase I 190 kDa polypeptide gi|82799|pir||JS0080
            DNA-directed RNA polymerase (EC 2.7.7.6) I 189K chain -
            fission yeast (Schizosaccharomyces pombe)
            gi|173433|gb|AAA35326.1| RNA polymerase I largest subunit
            gi|2832886|emb|CAA16827.1| nuc1 [Schizosaccharomyces
            pombe]
          Length = 1689

 Score =  152 bits (383), Expect = 1e-35
 Identities = 74/114 (64%), Positives = 88/114 (76%)
 Frame = -2

Query: 904  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 725
            TND+ A+L  YGVEAAR  I+ EV SVF  YGI VDPRHLSLIAD+MT +GGY+A NR+G
Sbjct: 1566 TNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMG 1625

Query: 724  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 563
            IE + SPF KMSFET  HFLT+A LRG VDDL +P++RL VGRV   GTG  ++
Sbjct: 1626 IEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679

>emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1689

 Score =  150 bits (380), Expect = 2e-35
 Identities = 73/118 (61%), Positives = 88/118 (73%)
 Frame = -2

Query: 904  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 725
            TND+ A+L  YGVEA R  I+ EV SVF  YGI VDPRHLSLIAD+MT +GGY+A NR+G
Sbjct: 1566 TNDIAAILRIYGVEATRNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMG 1625

Query: 724  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 551
            IE + SPF KMSFET  HFLT+A LRG VDDL +P++RL VGRV   GTG  ++   +
Sbjct: 1626 IEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFNPV 1683

>ref|NP_033114.2| RNA polymerase 1-4; RNA polymerase 1-4 (194 kDa subunit) [Mus
            musculus] gi|31753226|gb|AAH53744.1| RNA polymerase 1-4
            [Mus musculus]
          Length = 1717

 Score =  134 bits (338), Expect = 2e-30
 Identities = 66/118 (55%), Positives = 87/118 (72%)
 Frame = -2

Query: 904  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 725
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1599 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658

Query: 724  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 551
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1659 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1716

>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I largest subunit (RNA polymerase I 194
            kDa subunit) (RPA194) gi|7513630|pir||T13961 DNA-directed
            RNA polymerase (EC 2.7.7.6) I large chain - mouse
            gi|2330007|gb|AAB66718.1| RNA polymerase I largest
            subunit [Mus musculus]
          Length = 1717

 Score =  134 bits (338), Expect = 2e-30
 Identities = 66/118 (55%), Positives = 87/118 (72%)
 Frame = -2

Query: 904  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 725
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1599 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658

Query: 724  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 551
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1659 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1716

>gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus laevis]
          Length = 1730

 Score =  134 bits (337), Expect = 2e-30
 Identities = 64/116 (55%), Positives = 89/116 (76%)
 Frame = -2

Query: 904  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 725
            +ND+HA+  T+G+EAA   + +E++ VF+ YGI VDPRHLSL+AD+M  +G YR  NRIG
Sbjct: 1612 SNDIHAIANTFGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGTYRPLNRIG 1671

Query: 724  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 557
            ++SS SPF +M+FET+  FL DAT+ G+ DDL+SP+A L VG+VV+ GTG  +L Q
Sbjct: 1672 MQSSSSPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLKQ 1727



EST assemble image


clone accession position
1 CL32f10_r AV394848 1 511
2 CM098d09_r AV392905 389 908




Chlamydomonas reinhardtii
Kazusa DNA Research Institute