KCC000478A_c01_1
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000478A_C01_1 KCC000478A_c01_1
acgcgcttggcgacggcgtgacggagcacggcgcggcgcacctggccgccagcctgccgc
gcctggaggagctCAAGGTGAAGGACTGCCGCCGCGTGGGGCCCAGCCTGCGACAGACCA
TCGAGCTGTTCCGCGCCTCGGCCGTCGCCTCGGGTGCAGGCGGCGCCTCCTCTTCTGTGG
GCTCGCTGTCGTGCAGCAGCGGCCAGGCGCCGTCCGGCAGCGCCGGCGGCTCCGCGGGCG
GCGTGGGCCGGGCACAGGTGGTGGTGCCGGTGCTCGGCCCGATGCCGGTGGTGCGCTACG
GGCCGCAGGAGTGTGAGGGCGGGCGCTTCCCCTCCGCAGCATGATGCATGTGCGGTGGCG
GCATTACTTGTTGAGTTGTTTCTGTTATAGGGCATGCTACGCCTGTTGCGGCATGGCTGC
ACGCAGTGAACGAAGGAACTGACCCCCAATGGTGGTTGGTAGCCGAGAGAGTGGACGTCA
GCTGATCATCACCGTGGACCCGCTGCAATCACGAGGCGGGCGCCAACGCGTCGACGTTAA
AGAGTAATTACGATGACGTTTGTTGTTTGACATTGGCATCAACCGTAATGCATTAGGCGT
GTTTGGAGTCACCTGCTTATTTTGGCCGCGACACCGCAGGTGTGGCAGGGCAATACTCGT
ATCCGTGTTGAGGGCAAGATGATGATGCGGCGGCCCCGAGTGAATGCACTGCATTATTCA
GTCAGGAAGTTGTTGGGTGCGGAGATTGACATGCATCGCTACGTGGAAGTGCGGCAGTGG
AATAGAGAAAACGCCGTGAAGTTCGGCACTGCACAGTAGTCATTTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000478A_C01_1 KCC000478A_c01_1
         (827 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]         60  4e-08
dbj|BAC84075.1| hypothetical protein [Oryza sativa (japonica cul...    55  1e-06
dbj|BAC83518.1| hypothetical protein [Oryza sativa (japonica cul...    52  2e-05
gb|AAF23950.1| NTR [Herpesvirus papio]                                 48  2e-04
pir||T16755 hypothetical protein R144.4 - Caenorhabditis elegans       48  2e-04

>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
          Length = 816

 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 47/117 (40%), Positives = 50/117 (42%)
 Frame = -3

Query: 360 RHRTCIMLRRGSARPHTPAARSAPPASGRAPAPPPVPGPRRPRSRRRCRTAPGRCCTTAS 181
           R R  +  R    R   P  R  PP       PPP P   RPR RRR   AP R     +
Sbjct: 287 RVRAPLRPRHADGRLSPPPGRRGPPRGDARRGPPPRPR--RPRPRRR---APLRSARRGA 341

Query: 180 PQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGAPRRAPSRRR 10
           P  RRRR    R P RG       G APRG +  P APP AA   P  P RA  R R
Sbjct: 342 PDARRRRRRVCRGPPRG------RGGAPRGPARLPRAPPPAARPGPPPPGRALVRAR 392

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 52/139 (37%), Positives = 56/139 (39%), Gaps = 19/139 (13%)
 Frame = -3

Query: 360 RHRTCIMLRR-GSARPHTP-----AARSAPPASGRAPAPPPVPGP---RRPRSRRRCRTA 208
           R R C + RR G+ RP  P     A R AP   G    PP  PG      P + R    A
Sbjct: 5   RARLCDVRRRPGAPRPGRPRGAQRAPRPAPDPPGPGRRPPRAPGALGGMLPAAGRLAGPA 64

Query: 207 PGRCCTTASPQKR--RRRLHPRRRPRRGTARWSVAGWAP--RGGSPSP*APPGAAG---- 52
            GR    AS   R  R  L PR RP     R    G     R G P   AP  A G    
Sbjct: 65  RGRGLRAASGALRGVRPVLRPRGRPVARPGRVGRGGGLGRLRDGRPRQRAPGRALGAPGR 124

Query: 51  WRPGAPRRAPSR--RRQAR 1
            RP A RRAP R  RR+ R
Sbjct: 125 RRPPAGRRAPVRGDRRRGR 143

 Score = 37.7 bits (86), Expect = 0.23
 Identities = 45/118 (38%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
 Frame = -3

Query: 336 RRGSARPHTP-AARSAPPASGRAPAPPPVPGPRRPRSRR-RCRTAPGRCCTTASPQKRRR 163
           RR  ARP  P AAR    A     AP   PG   P   R R R A  R      P+ R  
Sbjct: 184 RRVPARPAPPPAARYRVRALPERGAPRGAPGRHGPPGLRPRGRGACARRRPLPVPRARGP 243

Query: 162 RLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGAPR-----RAPSRRRQA 4
               R R  R  AR  VA   P    P+  A PG AG R G P      RAP R R A
Sbjct: 244 PRGVRARLGRDAARRGVAARGP----PARAAAPGRAGDRRGRPGPRPRVRAPLRPRHA 297

 Score = 37.7 bits (86), Expect = 0.23
 Identities = 39/113 (34%), Positives = 43/113 (37%), Gaps = 10/113 (8%)
 Frame = -3

Query: 321 RPHTPAARSAPPASGRAPAPPPVP---------GPRRPRSRRRCRTAPGRCCTTASPQKR 169
           R   PAAR  PP  GRA      P         GP R   RRR R  P R        +R
Sbjct: 371 RAPPPAARPGPPPPGRALVRARAPAARLRGARRGPPRGALRRRPRARP-RVPRVLRAPRR 429

Query: 168 RRRLHPRRRP-RRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGAPRRAPSRR 13
            R + PR RP RRG           RG    P    G A  + GAP    +RR
Sbjct: 430 DRPVAPRPRPVRRGPPGAEARPGRRRGRRGGP-PTSGLAFTQSGAPDPRAARR 481

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
 Frame = +2

Query: 17  RDGARRGAPG-----RQPAAPGGAQGEGLPP---RGAQPATDHRAVPRLGRRLGCRRRLL 172
           R G RRG PG     R P  P  A G   PP   RG       R  P   RR   RRR  
Sbjct: 274 RAGDRRGRPGPRPRVRAPLRPRHADGRLSPPPGRRGPPRGDARRGPPPRPRRPRPRRRA- 332

Query: 173 FCGLAVVQQRPGAV-RQRRRLRGRRGPGTGGGAGARPDA 286
                +   R GA   +RRR R  RGP  G G   R  A
Sbjct: 333 ----PLRSARRGAPDARRRRRRVCRGPPRGRGGAPRGPA 367

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 42/122 (34%), Positives = 44/122 (35%), Gaps = 2/122 (1%)
 Frame = -3

Query: 360 RHRTCIMLRRGSARPHTPAARSAPPASGRAPAPPPVPGPRRP-RSRRRCRTAPGRC-CTT 187
           R R C    RG  R    A R  P    RAP P   PGP  P R+  R R    R     
Sbjct: 348 RRRVC----RGPPRGRGGAPRG-PARLPRAPPPAARPGPPPPGRALVRARAPAARLRGAR 402

Query: 186 ASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGAPRRAPSRRRQ 7
             P +   R  PR RPR           APR   P    P       PGA  R P RRR 
Sbjct: 403 RGPPRGALRRRPRARPRVPRVL-----RAPRRDRPVAPRPRPVRRGPPGAEAR-PGRRRG 456

Query: 6   AR 1
            R
Sbjct: 457 RR 458

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 60/199 (30%), Positives = 67/199 (33%), Gaps = 23/199 (11%)
 Frame = +2

Query: 11  RRRDGARRGAPGRQPAAPGGAQGEGLPP------RGAQPATDHRAVPR------LGRRLG 154
           R R GA RG P R P AP  A   G PP      R   PA   R   R      L RR  
Sbjct: 357 RGRGGAPRG-PARLPRAPPPAARPGPPPPGRALVRARAPAARLRGARRGPPRGALRRRPR 415

Query: 155 CRRRLLFCGLAVVQQRPGAVRQRRRLRGRRG----PG-TGGGAGARPDAGGALRAAGV*G 319
            R R+     A  + RP A R R   RG  G    PG   G  G  P +G A   +G   
Sbjct: 416 ARPRVPRVLRAPRRDRPVAPRPRPVRRGPPGAEARPGRRRGRRGGPPTSGLAFTQSGAPD 475

Query: 320 RALPLRSMMHVRWRHYLLSCFCYRACYACCGMAARSERRN*PPMVVGSRESGRQL----- 484
                R     R R    S    R   A  G    + R +     V  R   R       
Sbjct: 476 PRAARRPATSPRSRATSSSRALKRRAVATAGAPPSASRSSTRAAAVRRRSGSRTRRWART 535

Query: 485 -IITVDPLQSRGGRQRVDV 538
              T  P   R GRQ  +V
Sbjct: 536 PRTTGSPTAPRSGRQPANV 554

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 40/111 (36%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
 Frame = +2

Query: 11  RRRDGA-RRGAPGRQPAAPGGAQ---GEGLPPRGAQPATDHRAVPR-LGRRLGCR----R 163
           R RDG  R+ APGR   APG  +   G   P RG +     RA  R  G RLG R    R
Sbjct: 104 RLRDGRPRQRAPGRALGAPGRRRPPAGRRAPVRGDRRRGRPRAPRRGPGGRLGPRAPVCR 163

Query: 164 RLLFCGLAVVQQRPGAVRQRRRLRGRRGPGTGGGAGAR--PDAGGALRAAG 310
           R    G     + PG V  RRR+  R  P        R  P+ G    A G
Sbjct: 164 RPRRAGRGAPGRAPGRVPVRRRVPARPAPPPAARYRVRALPERGAPRGAPG 214

>dbj|BAC84075.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 216

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 57/197 (28%), Positives = 77/197 (38%), Gaps = 14/197 (7%)
 Frame = -3

Query: 669 NTDTSIALPHLRCRGQNKQVTPNTPNALRLMPMSNNKRHRNYSLTSTRWRP----PRDCS 502
           ++ +S   P   CR     +   +P+     P    +RHR  ++ +   RP    PR C 
Sbjct: 42  SSSSSPCAPCRHCRAVAVAIVSPSPSPSPCAPRRAARRHRRIAV-AVALRPVPPLPRRCH 100

Query: 501 GS----TVMIS*RPLSRLPTTIGGQFLRSLRAAMPQQA*HAL*QKQLNK*CRHRTCIMLR 334
                  V+++ RP  R   +       SLRAA                    R C   R
Sbjct: 101 RCRVTVAVVVALRPAPRRAPS------PSLRAA-------------------RRHCRAAR 135

Query: 333 RGSARPHTPAARSAP-PASGRAPAPPPVPGPRRPRSRRRCRTA-----PGRCCTTASPQK 172
             +A    P+ R AP P+  RAP   P   PR PR  RR   A     P RC   +S ++
Sbjct: 136 AAAASSPVPSPRRAPVPSPRRAPVASP---PRTPRPARRSPVASPPRAPHRCRAASSSRR 192

Query: 171 RRRRLHPRRRPRRGTAR 121
           RRR   PRR PRR   R
Sbjct: 193 RRRHTEPRRAPRRAAPR 209

 Score = 33.5 bits (75), Expect = 4.4
 Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
 Frame = +1

Query: 7   LATA*RSTARRTWPPACRAWRSSR*RTAAAWGPACDRPSSCSAPRPSPRVQ--------- 159
           +  A R   RR   P+ RA R    R A A   +   PS   AP PSPR           
Sbjct: 108 VVVALRPAPRRAPSPSLRAARRHC-RAARAAAASSPVPSPRRAPVPSPRRAPVASPPRTP 166

Query: 160 --------AAPPLLWARCRAAAARRRPAAPAAPRAA 243
                   A+PP    RCRAA++ RR      PR A
Sbjct: 167 RPARRSPVASPPRAPHRCRAASSSRRRRRHTEPRRA 202

>dbj|BAC83518.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 292

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 39/96 (40%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = -3

Query: 339 LRRGSARPHTPAARSAPPASGRAPAPPPVPGPRRP-RSRRRCRTAPGRCCTTASPQKRRR 163
           L  G     TPAA +A P +  A  PPP P  R P R R   R  P R    A P++   
Sbjct: 86  LYTGGEMLFTPAAAAACPRAAAAACPPPPPAGRPPARGRAAGRRPPPR----ARPRRAAA 141

Query: 162 RLHPR-RRPRRGTARWSVAGWAPRGGSPSP*APPGA 58
           RLH R R P RG+A  + AG  P   SP    PP A
Sbjct: 142 RLHARGRLPARGSA--AAAGLLPAAASPFVATPPAA 175

>gb|AAF23950.1| NTR [Herpesvirus papio]
          Length = 608

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 56  RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 115

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 116 GPTGGHPAAPGAPGPR----SPRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 168

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 169 PGPRSPRTERR 179

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 261 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 320

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 321 GPTGGHPAAPGAPGPR----SPRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 373

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 374 PGPRSPRTERR 384

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 179 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 238

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 239 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 291

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 292 PGPRSPRTERR 302

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 97  RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 156

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 157 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 209

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 210 PGPRSPRTERR 220

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 138 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 197

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 198 GPTGGHPAAPGAPGPR----SPRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 250

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 251 PGPRSPRTERR 261

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 302 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 361

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 362 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 414

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 415 PGPRSPRTERR 425

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 343 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 402

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 403 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 455

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 456 PGPRSPRTERR 466

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 384 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 443

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 444 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 496

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 497 PGPRSPRTERR 507

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 425 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 484

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 485 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 537

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 538 PGPRSPRTERR 548

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 44/131 (33%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAP------------- 205
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 220 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSAQRGHPPPGAGQRPS 279

Query: 204 ----GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGA 37
               G      +P  R     PR   RRG+A+    G  P G    P  P G     PGA
Sbjct: 280 GPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPAAPGA 332

Query: 36  P-RRAPSRRRQ 7
           P  R+P   R+
Sbjct: 333 PGPRSPRTERR 343

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 44/135 (32%), Positives = 53/135 (38%), Gaps = 27/135 (20%)
 Frame = -3

Query: 330 GSARPHTPAARSAPPASGR------APAPPP---VPGPRRPRSRRRCRTAP--------- 205
           G  RP T   R A   +GR      AP+PPP   V GPR PR+ RR  +A          
Sbjct: 11  GPGRPGTFPGREAGREAGRTWGPCPAPSPPPAFQVHGPRSPRTERRRGSAQRGHPPPGAG 70

Query: 204 --------GRCCTTASPQKRRRRLHPRRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGW 49
                   G      +P  R     PR   RRG+A+    G  P G    P  P G    
Sbjct: 71  QRPSGPTGGHPAAPGAPGPRS----PRTERRRGSAQ---RGHPPPGAGQRPSGPTGGHPA 123

Query: 48  RPGAP-RRAPSRRRQ 7
            PGAP  R+P   R+
Sbjct: 124 APGAPGPRSPRTERR 138

 Score = 39.7 bits (91), Expect = 0.061
 Identities = 41/116 (35%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
 Frame = -3

Query: 336 RRGSA-RPHTPAARSAPPA--SGRAPAPPPVPGPRRPRSRRRCRTAPGRCCTTASPQKRR 166
           RRGSA R H P      P+  +G  PA P  PGPR PR+ RR  +A              
Sbjct: 507 RRGSAQRGHPPPGAGQRPSGPTGGHPAAPGAPGPRSPRTERRRGSA-------------- 552

Query: 165 RRLHP----RRRPRRGTARWSVAGWAPRGGSPSP*APPGAAGWRPGAPRRAPSRRR 10
           +R HP     +RP   T     A  AP  G P+P    G A   P A  R P   R
Sbjct: 553 QRGHPPPGAGQRPSGPTGGHPAAPGAP--GPPNPERGSGPAD--PPAATRLPLEPR 604

>pir||T16755 hypothetical protein R144.4 - Caenorhabditis elegans
          Length = 363

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 43/149 (28%), Positives = 57/149 (37%), Gaps = 5/149 (3%)
 Frame = -2

Query: 436 PSFTACSHAATGVACPITETTQQVMPPPHMHHAAEGKRPPSHSCGP*RTTGIGPSTGTTT 257
           PS      A T +  P T ++   +PPP    A EGK+P   S      +      G T+
Sbjct: 99  PSENKIRRATTSIGPPPTASSAPPVPPPAPVPAVEGKKPSIVS------SSSFSHHGATS 152

Query: 256 CARPTPPAEPPALPDGAWPLLHDSEPTEEEAPPAPEATAEARNSSMVCRRLGPTRRQSFT 77
            A P PP  PP         +  S+PT    PPA +  +  R      R L P       
Sbjct: 153 SAPPPPPPPPPV-------SVPSSKPTPPPPPPAQQKPSSDREQFRTMRPLRPANDDIPQ 205

Query: 76  LSSSRR-----GRLAARCAAPCSVTPSPS 5
            +S+ R         AR AAP    P+PS
Sbjct: 206 ATSATRLARPLAPPPARPAAPPPPVPTPS 234



EST assemble image


clone accession position
1 CM073c03_r AV391398 1 592




Chlamydomonas reinhardtii
Kazusa DNA Research Institute