KCC000477A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000477A_C01 KCC000477A_c01
cagctggttcataaaactcgtatacagtgccttcgctagctcaggaccttgcgtctatat
gggcaaccacggtcagcaccCCAACGACTGAGAATATGGGACTTTTCAGCTGCTTCTCGC
GGCCGGCCTCACGGCCCTGCAAGTTATCGGAATCACCTCCGCATTCTGCGAAGGTGGAAG
CCAAAGGTCGTGACCACGCCTCGCCATTCAACGCGGAAGAGCTCTACCTCAAAGATGCAG
GAGTGGGCGACCTGCGCCAGAAGGCCTGGGTCGTTCACAGCGACGCACCCAGCGCTGCGC
TGCCGCAACAGTTCTCCAACGACTCCGCACGCGCGCTCATGCCGCAGCAGCTCGCACCCA
CATCCAGCAGCACTTACGCGACAACGACGCCTCATGCCTCGTCCGACGGCCGCTGCTCCG
CCAGCAGCTGCTACGGCGGCACCGCCGCCAATGCGCTTGCGGCCTCCAAGTCGCCTTCCT
CCCATGGGGTGCATACCGCTGATGGCACGCAGCACGACGCGCGGGAGCCGCCGGCAGCCG
GCCCGGATGTTGTCACCGCTCATCACGCACAGCAGCATCGACCTGTCGTGAGGAGCCAGC
AGCAGTACATGGCTACCTTGCAGGAGGCTCCCCCAACAAGGAGTGACGGCGTGGCAGTAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000477A_C01 KCC000477A_c01
         (660 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC44888.1| unknown [Nannocystis exedens]                           49  7e-05
dbj|BAC10230.1| hypothetical protein [Oryza sativa (japonica cul...    49  7e-05
dbj|BAB90049.1| OSJNBb0049O23.6 [Oryza sativa (japonica cultivar...    47  3e-04
ref|NP_003878.1| development- and differentiation-enhancing fact...    46  4e-04
ref|NP_611299.2| CG10915-PA [Drosophila melanogaster] gi|2015162...    45  0.001

>gb|AAC44888.1| unknown [Nannocystis exedens]
          Length = 290

 Score = 48.9 bits (115), Expect = 7e-05
 Identities = 37/121 (30%), Positives = 56/121 (45%), Gaps = 4/121 (3%)
 Frame = +1

Query: 193 TTPRHSTRKSSTSKMQEWATCARRPGSFTATHPALRCRNSSPTTPHARSCRSSSHPHPAA 372
           T+P  ++R+SS S    W  C+R P +++AT P  R   S P++   R CR +    PA 
Sbjct: 29  TSPSSASRRSSPSSAVRWP-CSRTPPTWSATSPPSRSPCSPPSSRCVRPCRVAPTGSPAP 87

Query: 373 LTRQRRLMPRPTAAAPPAAATAAPPPMRLRPPSRLP-PMGCIPLMARSTTR---GSRRQP 540
               R   P  + +  P+++TA  P      P+  P P       A S+T    G+ R P
Sbjct: 88  RPSARSPTPCSSRSRAPSSSTARSPASAAATPTSNPNPCWSSAPPASSSTSPRPGTSRAP 147

Query: 541 A 543
           A
Sbjct: 148 A 148

>dbj|BAC10230.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 160

 Score = 48.9 bits (115), Expect = 7e-05
 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +1

Query: 169 RRWKPKVVTTPRHSTRKSSTSKMQEWATCARRPGSFTATHPALRCR----NSSPTTPHAR 336
           R W+ + V   R   R+    + +          + ++  P  R R    N  P    A 
Sbjct: 43  RGWRGERVGKARRRRRRQGGGEARRLRVARDTTAAASSAAPRRRARLLRRNPPPLVSSAT 102

Query: 337 SCRSSSH-PHPAALTRQRRLMPRPTAAAPPAAA-----TAAPPPMRLRPPSRLPP 483
           S R SSH PHPAA    RR+ P   ++A PAAA       +PPP    P +RLPP
Sbjct: 103 SHRRSSHPPHPAAARLLRRMPPPLASSAAPAAARRLIPRRSPPPPPPLPVARLPP 157

>dbj|BAB90049.1| OSJNBb0049O23.6 [Oryza sativa (japonica cultivar-group)]
          Length = 305

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 53/196 (27%), Positives = 68/196 (34%), Gaps = 20/196 (10%)
 Frame = +1

Query: 106 SAASRGRPHGPASYRNHLRILRRWKPKVVTTPRHSTRKSST-----------SKMQEWAT 252
           +AA   +P  P   R H RI   W P     PRH  R+              +      T
Sbjct: 10  AAAVLSQPSSPVFGRRH-RIRTPWTPTSPRLPRHCIRQRRQPPPPHRHHYHGAASLAATT 68

Query: 253 CARRPGSFTATHPALRCRNSSPTTPHARSCRSSSHPHPAALTRQRRLMPRPTAAAPPAAA 432
            A RP    A+     CR SS  +   R   +   P PA +       P PT+  P  A 
Sbjct: 69  AAIRPPPQLASRRISSCRLSSHHSTR-RLATNQPPPSPATVGSHSHHQPPPTSRRPDLAG 127

Query: 433 TA---------APPPMRLRPPSRLPPMGCIPLMARSTTRGSRRQPARMLSPLITHSSIDL 585
            A           PP R  PP   P  G           GS  +  R  S   T  +  L
Sbjct: 128 AADASQPLPPTPAPPRRPPPPPSFPAAGYRSPRTGQPWHGSGHRHRRAASLAATSRTAAL 187

Query: 586 S*GASSSTWLPCRRLP 633
           S   + +T++P RRLP
Sbjct: 188 S---TVATFIPRRRLP 200

>ref|NP_003878.1| development- and differentiation-enhancing factor 2; PYK2 C
            terminus-associated protein [Homo sapiens]
            gi|7512970|pir||T00050 hypothetical protein KIAA0400 -
            human gi|2662081|dbj|BAA23696.1| KIAA0400 [Homo sapiens]
          Length = 1006

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 35/123 (28%), Positives = 53/123 (42%), Gaps = 1/123 (0%)
 Frame = +1

Query: 175  WKPKVVTTPRHSTRKSSTSKMQEWATCARRPGSFTATHPALRCRNSSPTTPHARSCRSSS 354
            WK   V+    S ++SS+            P +     P LR  +++P TP        +
Sbjct: 805  WKTNSVSVDGGSRQRSSSD-----------PPAVHPPLPPLRVTSTNPLTP--------T 845

Query: 355  HPHPAALTRQ-RRLMPRPTAAAPPAAATAAPPPMRLRPPSRLPPMGCIPLMARSTTRGSR 531
             P P A T      + +P+  APP  +   PPP+  +PPSRLP     P   +ST   ++
Sbjct: 846  PPPPVAKTPSVMEALSQPSKPAPPGISQIRPPPLPPQPPSRLPQKKPAPGADKSTPLTNK 905

Query: 532  RQP 540
             QP
Sbjct: 906  GQP 908

>ref|NP_611299.2| CG10915-PA [Drosophila melanogaster] gi|20151627|gb|AAM11173.1|
           LD34893p [Drosophila melanogaster]
           gi|21626479|gb|AAF57737.2| CG10915-PA [Drosophila
           melanogaster]
          Length = 609

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 35/102 (34%), Positives = 43/102 (41%), Gaps = 3/102 (2%)
 Frame = +1

Query: 190 VTTPRHSTRKSSTSKMQEWATCARRPGSFTATHPALRCRNSSPTTPHARSCRSSSHPHPA 369
           VT P  +    S +KMQ  AT  R PG   A   A    + + TTPH        HP P 
Sbjct: 497 VTVPMVAPPSPSPAKMQPTATIQRAPGGKYAALAAAAALDQT-TTPHP-------HPVPI 548

Query: 370 ALTRQRRLMPRPTAAAPPAAATAAPPPMRLR---PPSRLPPM 486
           A+         P    PPA A  APPP+  +   PP R P +
Sbjct: 549 AV---------PPVTVPPAGARGAPPPIPTKPIVPPKREPSL 581



EST assemble image


clone accession position
1 CL32e06_r AV394876 1 491
2 CM064c11_r AV391001 99 710




Chlamydomonas reinhardtii
Kazusa DNA Research Institute