KCC000472A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000472A_C01 KCC000472A_c01
attgaataGAGGATAGCATAACTATCAGCTTTCCAGGCCAAATTACAAGAAAGGGCTCGT
TCTAATTGTTCTTCCGGGTGCGCGCGGCCTTCGCTTGCGACCAACCTCCCTCAAACTCGT
GCTCTAGAGCGGGGCACCTTTAGGCACGTCGATGCATCTGTAGCCTACTGCAAGGGCGCG
GCAATCAACTTCTTCCGCGGGGCAGGGCCCCTTAGACAGGATGCGTCTCAAGGTCAAGCA
GTCCAGCGCGAATGTGCACAGCGAATTAACAGCAGCTGTGGGCTGGAATGTCTGGAATGA
ACTGTTCACTTGTAGCGACGACCAGACTATTCACAAATGGAACATGCTGGGGGAGCCAGA
GCAGAAGGTCAGCACTCTGGACGCATACTTCACGGATATGCACTGGTACCCCGTGAGCTC
GAAGAAGACGCAAGCAGGCGGGACGGACGTATTCGCGGTGGCGTGCACAGACGGCTCTGT
AAAAATCCTCAGCCGCACGGGCCGCGTGGAGAAGTCCATTGAGGGGCACAAGGGCGCGTG
CATCTCGCTGCGCTGGAGCTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000472A_C01 KCC000472A_c01
         (561 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC31200.1| unnamed protein product [Mus musculus]                 96  3e-19
ref|NP_080917.1| RIKEN cDNA 4921524P20 [Mus musculus] gi|2170660...    96  3e-19
dbj|BAC98149.1| mKIAA1374 protein [Mus musculus]                       96  3e-19
ref|XP_028413.4| similar to KIAA1374 protein [Homo sapiens]            94  2e-18
dbj|BAA92612.1| KIAA1374 protein [Homo sapiens]                        86  4e-16

>dbj|BAC31200.1| unnamed protein product [Mus musculus]
          Length = 751

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
 Frame = +2

Query: 221 MRLKVKQSSANVHSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTL--DAYFT 394
           MRLK+  S    H EL + VGW    EL++CSDD  I KWN+L      +  L  D Y  
Sbjct: 1   MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPI 60

Query: 395 DMHWYPVS---SKKTQAGGTDVFAVACTDGSVKILSRTGRVEKSIEGHKGACISLRWS 559
           D+HW+P S    K+TQA   + F +  +DG   ++S+ GRVEKS+E H GA ++ RW+
Sbjct: 61  DLHWFPKSLGIKKQTQA---ESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWN 115

>ref|NP_080917.1| RIKEN cDNA 4921524P20 [Mus musculus] gi|21706605|gb|AAH34101.1|
           RIKEN cDNA 4921524P20 [Mus musculus]
          Length = 777

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
 Frame = +2

Query: 221 MRLKVKQSSANVHSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTL--DAYFT 394
           MRLK+  S    H EL + VGW    EL++CSDD  I KWN+L      +  L  D Y  
Sbjct: 1   MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPI 60

Query: 395 DMHWYPVS---SKKTQAGGTDVFAVACTDGSVKILSRTGRVEKSIEGHKGACISLRWS 559
           D+HW+P S    K+TQA   + F +  +DG   ++S+ GRVEKS+E H GA ++ RW+
Sbjct: 61  DLHWFPKSLGIKKQTQA---ESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWN 115

>dbj|BAC98149.1| mKIAA1374 protein [Mus musculus]
          Length = 446

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
 Frame = +2

Query: 221 MRLKVKQSSANVHSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTL--DAYFT 394
           MRLK+  S    H EL + VGW    EL++CSDD  I KWN+L      +  L  D Y  
Sbjct: 8   MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPI 67

Query: 395 DMHWYPVS---SKKTQAGGTDVFAVACTDGSVKILSRTGRVEKSIEGHKGACISLRWS 559
           D+HW+P S    K+TQA   + F +  +DG   ++S+ GRVEKS+E H GA ++ RW+
Sbjct: 68  DLHWFPKSLGIKKQTQA---ESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWN 122

>ref|XP_028413.4| similar to KIAA1374 protein [Homo sapiens]
          Length = 777

 Score = 93.6 bits (231), Expect = 2e-18
 Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
 Frame = +2

Query: 221 MRLKVKQSSANVHSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTL--DAYFT 394
           MRLK+       H EL + VGW    EL++CSDD  I KWN+L     ++  L  D Y  
Sbjct: 1   MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKLPDDIYPI 60

Query: 395 DMHWYPVS---SKKTQAGGTDVFAVACTDGSVKILSRTGRVEKSIEGHKGACISLRWS 559
           D HW+P S    K+TQA   + F +  +DG   ++S+ GRVEKS+E H GA ++ RW+
Sbjct: 61  DFHWFPKSLGVKKQTQA---ESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWN 115

>dbj|BAA92612.1| KIAA1374 protein [Homo sapiens]
          Length = 764

 Score = 85.5 bits (210), Expect = 4e-16
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
 Frame = +2

Query: 263 ELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTL--DAYFTDMHWYPVS---SKK 427
           EL + VGW    EL++CSDD  I KWN+L     ++  L  D Y  D HW+P S    K+
Sbjct: 2   ELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKLPDDIYPIDFHWFPKSLGVKKQ 61

Query: 428 TQAGGTDVFAVACTDGSVKILSRTGRVEKSIEGHKGACISLRWS 559
           TQA   + F +  +DG   ++S+ GRVEKS+E H GA ++ RW+
Sbjct: 62  TQA---ESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWN 102



EST assemble image


clone accession position
1 LCL028d08_r AV627551 1 458
2 HCL072d04_r AV643591 9 490
3 MXL017e04_r BP094052 11 524
4 CL70a06_r AV396844 16 548
5 MXL066c09_r BP096879 19 517
6 LCL031e12_r AV627757 21 277
7 MXL027e12_r BP094692 21 197
8 CL32d02_r AV394829 33 562
9 HCL091h02_r AV644660 33 558
10 MXL098a07_r BP098724 33 402
11 HCL038c03_r AV641656 33 454
12 HCL008g06_r AV640012 38 445




Chlamydomonas reinhardtii
Kazusa DNA Research Institute