KCC000464A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000464A_C02 KCC000464A_c02
CGGCAACCATGCAGGCACTTCCTCCCAAGATTCCCGCTTCCGTATCGGGCCACGGAACCC
AGTCCCGGCGTCACAGCCTGGACTGGTCGCATATTGGCCTTCCCTCTCGCGAGACGCAGC
TGCGGGCTGGCTTTGTGCCCTCGGCTGCTGTGGTGATTGTGATTTTCGTCGGCCTGTTTT
TCGGCTTGACCCAGTACACCGAGTTGGGCACAAATGCGCAGGAGGAGGTCGATCGCTTTT
ACAAATACCTGGTCGATGTCAACATCATGGTGTGGATCGGTTTCGGCTTCCTGATGACCT
TCATGCGCCGCTACGGCTACGGCGCTGTGGCCCTGAACTACTTTGCCTCGGCGCTCATGT
TCCTGGAGGCCATCCTCATGATCGGCGCCACGCAGCAAGTGTTCTGGAACTACCATCGCA
CCAAGATCCAGATCGACATCGCCTTGCTGATCGACTGCGCCTTCTGCGCCGCCTCTGGTA
TGATTGCCTTCGGCGCCATCATCGGCAAGGCCACGCCCACGCAGTTGCTGTGGCTGCTCT
TTTGGCAGGTTCCGCTGTACGCTCTCAACCAGCAGCTGGTGATCCACACATTCAAGGCGC
TGGACATGGGCGGCACCATCGTCATCCACCTGTTCGGAGCCTACTACGGATTGGCAGCCT
CGCTCATGATCAGCCGCAAGCAGCCGCTGCACGGCCTGGACAACCCCAAGAACTCGGGCG
CCTACCTGAACGACATCTTCTCCATGATCGGAACCATCTTCCTCTTCATCTACTGGCCCA
GCTTCAACGGCGCCCTGGCCTCCGTGGCGTATGCGAACCAAACGTCCGCCACCTACGCCG
AGAAATCGGCCCAGTTCCTAGCCATTGTCAACACCCTCCTCTCTCTGCTGGGGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000464A_C02 KCC000464A_c02
         (895 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK14647.1| Rh protein [Chlamydomonas reinhardtii] gi|1722351...   570  e-161
gb|AAM19665.1| Rh2 protein [Chlamydomonas reinhardtii]                516  e-145
gb|AAM17923.1| Rh protein homolog-2 [Chlamydomonas reinhardtii] ...   516  e-145
emb|CAA73029.1| Rh antigen-like protein [Geodia cydonium]             173  3e-42
gb|AAK50057.2|AF364404_1 Rh-like protein [Carcinus maenas]            168  1e-40

>gb|AAK14647.1| Rh protein [Chlamydomonas reinhardtii] gi|17223514|gb|AAK14648.1|
           Rh protein [Chlamydomonas reinhardtii]
          Length = 574

 Score =  570 bits (1468), Expect = e-161
 Identities = 284/295 (96%), Positives = 289/295 (97%)
 Frame = +3

Query: 9   MQALPPKIPASVSGHGTQSRRHSLDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGL 188
           MQALPPKIPASVSGHGTQSRRHSLDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGL
Sbjct: 1   MQALPPKIPASVSGHGTQSRRHSLDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGL 60

Query: 189 TQYTELGTNAQEEVDRFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLE 368
           TQYTELGTNAQEEVDRFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLE
Sbjct: 61  TQYTELGTNAQEEVDRFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLE 120

Query: 369 AILMIGATQQVFWNYHRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQ 548
           AILMIGATQQVFWNYHRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQ
Sbjct: 121 AILMIGATQQVFWNYHRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQ 180

Query: 549 VPLYALNQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYL 728
           VPLYALNQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYL
Sbjct: 181 VPLYALNQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYL 240

Query: 729 NDIFSMIGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG 893
           NDIFSMIGTIFLFIYWPSFNGALASV+  +   AT A+K+AQFL+IVNTLLSLLG
Sbjct: 241 NDIFSMIGTIFLFIYWPSFNGALASVSAGHMEEATDAKKAAQFLSIVNTLLSLLG 295

>gb|AAM19665.1| Rh2 protein [Chlamydomonas reinhardtii]
          Length = 638

 Score =  516 bits (1328), Expect = e-145
 Identities = 252/289 (87%), Positives = 268/289 (92%)
 Frame = +3

Query: 27  KIPASVSGHGTQSRRHSLDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGLTQYTEL 206
           KIP +++  G  SRRHSLDWSH+GLP RE QLR GF PS   +  + VGLFFGLTQYTEL
Sbjct: 6   KIPTAMAS-GAASRRHSLDWSHVGLPPREPQLRTGFAPSVIAIAAVIVGLFFGLTQYTEL 64

Query: 207 GTNAQEEVDRFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLEAILMIG 386
             NAQE+V+R+YKY +DV +M++IGFGFLMTFMRRY YGAV+LNYFASALMFLEAILMIG
Sbjct: 65  AENAQEQVERYYKYFIDVQVMIFIGFGFLMTFMRRYSYGAVSLNYFASALMFLEAILMIG 124

Query: 387 ATQQVFWNYHRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQVPLYAL 566
           ATQQVFWNYHRTKIQID+ALLIDCAFCA SGMIAFGAIIGKATPTQ+LWLLFWQVPLYAL
Sbjct: 125 ATQQVFWNYHRTKIQIDMALLIDCAFCAGSGMIAFGAIIGKATPTQVLWLLFWQVPLYAL 184

Query: 567 NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM 746
           NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM
Sbjct: 185 NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM 244

Query: 747 IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG 893
           IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG
Sbjct: 245 IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG 293

>gb|AAM17923.1| Rh protein homolog-2 [Chlamydomonas reinhardtii]
           gi|20340033|gb|AAM19664.1|AF500097_1 Rh2 protein
           [Chlamydomonas reinhardtii]
          Length = 638

 Score =  516 bits (1328), Expect = e-145
 Identities = 252/289 (87%), Positives = 268/289 (92%)
 Frame = +3

Query: 27  KIPASVSGHGTQSRRHSLDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGLTQYTEL 206
           KIP +++  G  SRRHSLDWSH+GLP RE QLR GF PS   +  + VGLFFGLTQYTEL
Sbjct: 6   KIPTAMAS-GAASRRHSLDWSHVGLPPREPQLRTGFAPSVIAIAAVIVGLFFGLTQYTEL 64

Query: 207 GTNAQEEVDRFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLEAILMIG 386
             NAQE+V+R+YKY +DV +M++IGFGFLMTFMRRY YGAV+LNYFASALMFLEAILMIG
Sbjct: 65  AENAQEQVERYYKYFIDVQVMIFIGFGFLMTFMRRYSYGAVSLNYFASALMFLEAILMIG 124

Query: 387 ATQQVFWNYHRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQVPLYAL 566
           ATQQVFWNYHRTKIQID+ALLIDCAFCA SGMIAFGAIIGKATPTQ+LWLLFWQVPLYAL
Sbjct: 125 ATQQVFWNYHRTKIQIDMALLIDCAFCAGSGMIAFGAIIGKATPTQVLWLLFWQVPLYAL 184

Query: 567 NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM 746
           NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM
Sbjct: 185 NQQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSM 244

Query: 747 IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG 893
           IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG
Sbjct: 245 IGTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLLG 293

>emb|CAA73029.1| Rh antigen-like protein [Geodia cydonium]
          Length = 523

 Score =  173 bits (439), Expect = 3e-42
 Identities = 99/286 (34%), Positives = 160/286 (55%), Gaps = 16/286 (5%)
 Frame = +3

Query: 78  LDWSHIGLPSRETQLRAGFVPSAAVVIVIFVGLFFGLTQYTELGTNAQEEVD-------- 233
           +DW+ + LP        GF+    V+ +I  GL   L +Y + G   + +          
Sbjct: 1   MDWAKMLLP--------GFLLVFQVIFIILYGL---LVRYDDTGDAIRNDTTISDVSNLD 49

Query: 234 ------RFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLEAILMIGATQ 395
                 + Y +  DV++M+++GFGFLMTF+RRYG+G+++ N   ++     + L  G  Q
Sbjct: 50  SYRSTLKVYPFFQDVHVMIFVGFGFLMTFLRRYGFGSISFNLLLASFAIQWSTLTSGVFQ 109

Query: 396 QVFWNYHRT--KIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQVPLYALN 569
            +  +       I +++  L+   F  A+ +I  GA++GKA+P QL+ + F+++  Y+ N
Sbjct: 110 FIDQSDAGDCCTINVNLETLVGADFAGAAVLITMGAVLGKASPFQLVIIAFFELIFYSCN 169

Query: 570 QQLVIHTFKALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSMI 749
           + L +H F A D+GG+++IH FGAY+GLA SLM+  K      DN KNS  Y +D+FSMI
Sbjct: 170 EALNVHVFMAADIGGSMLIHTFGAYFGLAVSLMLYNKD---ARDNEKNSTVYHSDLFSMI 226

Query: 750 GTIFLFIYWPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSL 887
           GT+FL+++WPSFNG LAS              +AQ  A++NT  ++
Sbjct: 227 GTLFLWLFWPSFNGVLAS-------------GNAQTRAVINTYYAM 259

>gb|AAK50057.2|AF364404_1 Rh-like protein [Carcinus maenas]
          Length = 478

 Score =  168 bits (425), Expect = 1e-40
 Identities = 92/219 (42%), Positives = 134/219 (61%)
 Frame = +3

Query: 234 RFYKYLVDVNIMVWIGFGFLMTFMRRYGYGAVALNYFASALMFLEAILMIGATQQVFWNY 413
           R Y    DV++M++IGFGFLM F++RYG  AV +N+  +AL    AIL+ G     F++ 
Sbjct: 62  RTYPMFQDVHVMIFIGFGFLMMFLKRYGLSAVGMNFLIAALCLQWAILVNG-----FFHL 116

Query: 414 HRTKIQIDIALLIDCAFCAASGMIAFGAIIGKATPTQLLWLLFWQVPLYALNQQLVIHTF 593
               I +D+  L+   F AA+ +I+FG +IGK TPTQL+ L   +VPL+A+N+ +  + F
Sbjct: 117 KEGLIMVDLNALLGADFTAATILISFGVMIGKTTPTQLILLSLMEVPLFAINEVIGRNYF 176

Query: 594 KALDMGGTIVIHLFGAYYGLAASLMISRKQPLHGLDNPKNSGAYLNDIFSMIGTIFLFIY 773
            A+DMG ++ +H FGAY+GLAASLMI R+         K   +Y +D+F+MIGT+FL++Y
Sbjct: 177 GAIDMGDSMFVHAFGAYFGLAASLMIYRRD----ASTEKEGSSYQSDLFAMIGTVFLWLY 232

Query: 774 WPSFNGALASVAYANQTSATYAEKSAQFLAIVNTLLSLL 890
           WPSFN             A  A    Q   I+NT +SL+
Sbjct: 233 WPSFN-------------AGAAPGDDQHRGIINTYISLI 258



EST assemble image


clone accession position
1 CL31f08_r AV395002 1 619
2 HCL061f04_r AV642981 90 578
3 CL35a03_r AV395097 106 595
4 CL60b09_r AV396381 127 657
5 CL75e10_r AV397056 208 842
6 LCL038f12_r AV628225 372 484
7 LCL052h11_r AV629140 436 846
8 HCL025f07_r AV640978 486 987




Chlamydomonas reinhardtii
Kazusa DNA Research Institute