KCC000462A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000462A_C01 KCC000462A_c01
taCTTGAGTAGGCTGATTCAAAAATGCAGCTCCTTGCAGTGAACCAGCGCTCGCTTGCGC
GCAGCGCACAGCAGCGCCAGGCCGTTCCCGTCAGGGCAAATGCTATTCGCTCGGTTAGGA
TGATCGGGGGTGCCCGTCGCGCTGTGGTCGTCCGCGCGGAGCAGACCACTGCCCCCACCC
CCGCTGCGAATGCGCTGGGCTCGACGATGGCTGTTGGCACAATTGCTCTGCGGAAAGCTG
TTGCCCAGGCGGCCTACAAGGGCAGCAACGTTTTTGTCGTCGCCGGCACTGGCCAGCTGT
CCATCCGCATCATCCGCGACCTGCTGTCCTCGGGCTTCAAGGTCACCGCCGGCGTGTCGG
ACCTGGCCGCCGCCAACGCCGCCTTTGCGTTCTTCAAGCGCTACGAGCTGATCGACAAGG
CGGCGGCCGCCAACCTGAAGCTGATCTCGCTGCTGCAGCTGGAGGAGGATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000462A_C01 KCC000462A_c01
         (471 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565789.2| flavin reductase-related [Arabidopsis thaliana]...    47  9e-05
gb|AAK59482.2| unknown protein [Arabidopsis thaliana]                  47  9e-05
gb|AAL08281.1| At2g34460/T31E10.20 [Arabidopsis thaliana] gi|201...    46  2e-04
pir||T12970 hypothetical protein T6H20.190 - Arabidopsis thalian...    42  0.005
ref|NP_566886.1| expressed protein [Arabidopsis thaliana] gi|136...    42  0.005

>ref|NP_565789.2| flavin reductase-related [Arabidopsis thaliana]
           gi|7485472|pir||T02333 hypothetical protein At2g34460
           [imported] - Arabidopsis thaliana
           gi|24030209|gb|AAN41284.1| unknown protein [Arabidopsis
           thaliana]
          Length = 280

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 25/56 (44%), Positives = 31/56 (54%)
 Frame = +3

Query: 219 TIALRKAVAQAAYKGSNVFVVAGTGQLSIRIIRDLLSSGFKVTAGVSDLAAANAAF 386
           +I + K  A+ A K   VFV   TGQ   RI+  LLS GF V AGV D+  A  +F
Sbjct: 32  SIKMEKGEAENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF 87

>gb|AAK59482.2| unknown protein [Arabidopsis thaliana]
          Length = 268

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 25/56 (44%), Positives = 31/56 (54%)
 Frame = +3

Query: 219 TIALRKAVAQAAYKGSNVFVVAGTGQLSIRIIRDLLSSGFKVTAGVSDLAAANAAF 386
           +I + K  A+ A K   VFV   TGQ   RI+  LLS GF V AGV D+  A  +F
Sbjct: 20  SIKMEKGEAENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF 75

>gb|AAL08281.1| At2g34460/T31E10.20 [Arabidopsis thaliana]
           gi|20197081|gb|AAC26697.2| expressed protein
           [Arabidopsis thaliana] gi|20197169|gb|AAM14955.1|
           expressed protein [Arabidopsis thaliana]
          Length = 246

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = +3

Query: 228 LRKAVAQAAYKGSNVFVVAGTGQLSIRIIRDLLSSGFKVTAGVSDLAAANAAF 386
           + K  A+ A K   VFV   TGQ   RI+  LLS GF V AGV D+  A  +F
Sbjct: 1   MEKGEAENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF 53

>pir||T12970 hypothetical protein T6H20.190 - Arabidopsis thaliana
           gi|5541681|emb|CAB51187.1| putative protein [Arabidopsis
           thaliana]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +3

Query: 270 VFVVAGTGQLSIRIIRDLLSSGFKVTAGVSDLAAANAAFAFFKRYELIDKAAAANLKLI 446
           +FV   TGQ  IRI + LL  GF V AGV DL AA         Y+++       L  +
Sbjct: 94  IFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKILSNDEVKRLNAV 152

>ref|NP_566886.1| expressed protein [Arabidopsis thaliana]
           gi|13605914|gb|AAK32942.1|AF367356_1 AT3g46780/T6H20_190
           [Arabidopsis thaliana] gi|23505929|gb|AAN28824.1|
           At3g46780/T6H20_190 [Arabidopsis thaliana]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +3

Query: 270 VFVVAGTGQLSIRIIRDLLSSGFKVTAGVSDLAAANAAFAFFKRYELIDKAAAANLKLI 446
           +FV   TGQ  IRI + LL  GF V AGV DL AA         Y+++       L  +
Sbjct: 94  IFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKILSNDEVKRLNAV 152



EST assemble image


clone accession position
1 LCL019g10_r AV627014 1 439
2 HCL024a07_r AV640880 3 279
3 CL31e12_r AV395019 12 472




Chlamydomonas reinhardtii
Kazusa DNA Research Institute