KCC000415A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000415A_C02 KCC000415A_c02
AGCACGTGCTCGCAAGCCTGGCTCTTCCTCTTTCACCTACCGTCCATAGGACTCTTCTCA
CACCACAGGTGTGCAGCTGGGAGTCGACGTCGACCTCGAGTCGACGCGTAAAAGAGAGTG
TCCCAAACCCCCACTTGGTGGCTGTCTCTTCCTCAGGCCAGCAAAGATGCTTATCCCCAA
GAAGAACCGCAGGGAGGTGTACAAGTACCTCTTCAAGGAGGGTGTCCTTCAGTGCGGAGA
AGGACTTCAACCTCAAGGAGCACCCGGAGATCCCCGGCGTGCCCAACCTGCAGGTCATTA
AGCTCATGCAGAGCCTTCAAGTCCCAGGAGCTGGTGACTGAGCGCTTCTCCTGGCGCCAC
TACTACTGGTTCCTGACCAACAAGGTGCATTGACTACCTGCGCGAGTACCTGAACCTGCC
CAGCGAGATCGTGCCCGCCACCCTGAAGAAGTCCAACCGCCCCCTGGAGCGTGGCCCGCC
CATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGGGTGGCTTCGGTGGCCC
CCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTCCCCGCG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000415A_C02 KCC000415A_c02
(581 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LTF2|R103_ARATH 40S ribosomal protein S10-3 gi|8953720|dbj|... 67 4e-20
ref|NP_200077.1| 40S ribosomal protein S10 (RPS10C) [Arabidopsis... 67 4e-20
ref|NP_198967.1| expressed protein [Arabidopsis thaliana] gi|201... 76 3e-13
emb|CAD41005.1| OSJNBa0042L16.19 [Oryza sativa (japonica cultiva... 75 7e-13
ref|NP_194304.1| 40S ribosomal protein S10 (RPS10A) [Arabidopsis... 74 1e-12
>sp|Q9LTF2|R103_ARATH 40S ribosomal protein S10-3 gi|8953720|dbj|BAA98083.1| contains
similarity to 40S ribosomal protein S10~gene_id:F6N7.14
[Arabidopsis thaliana]
Length = 181
Score = 67.4 bits (163), Expect(3) = 4e-20
Identities = 40/67 (59%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Frame = +2
Query: 389 IDYLREYLNLPSEIVPATLKKSNRPLER---GPPMRGGDRGDRPPRREGGFGGPREGGRE 559
I++LR YLNLPS++VPATLKKS +P R GPP GDR R PR EGG PR G R+
Sbjct: 73 IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPP---GDRS-RGPRHEGG-DRPRFGDRD 127
Query: 560 GYRGAPR 580
GYR PR
Sbjct: 128 GYRAGPR 134
Score = 45.4 bits (106), Expect = 6e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 283 PTCRSLSSCRAFKSQELVTERFSWRHYYWFLTNK-VH*LPARVPEPAQRDRARHPEEVQP 459
P + + ++FKS+E V E F+W HYYWFLTN+ + L + P+ A + +P
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
Query: 460 ---PPGAWPAHARRRPR 501
P G P R PR
Sbjct: 98 GGRPFGGPPGDRSRGPR 114
Score = 40.4 bits (93), Expect(3) = 4e-20
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 234 AEKDFNLKEHPEIPGVPNLQVIKLMQSLQ 320
A+KDFNL +HP I VPNLQVIKLMQS +
Sbjct: 23 AKKDFNLAKHPLID-VPNLQVIKLMQSFK 50
Score = 32.0 bits (71), Expect(3) = 4e-20
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 167 MLIPKKNRREVYKYLFKEGV 226
M+I + NR+E+ KYLFKEGV
Sbjct: 1 MIISEANRKEICKYLFKEGV 20
>ref|NP_200077.1| 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana]
gi|17528966|gb|AAL38693.1| unknown protein [Arabidopsis
thaliana] gi|21617950|gb|AAM67000.1| putative ribosomal
protein S10 [Arabidopsis thaliana]
gi|21689687|gb|AAM67465.1| unknown protein [Arabidopsis
thaliana]
Length = 179
Score = 67.4 bits (163), Expect(3) = 4e-20
Identities = 40/67 (59%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Frame = +2
Query: 389 IDYLREYLNLPSEIVPATLKKSNRPLER---GPPMRGGDRGDRPPRREGGFGGPREGGRE 559
I++LR YLNLPS++VPATLKKS +P R GPP GDR R PR EGG PR G R+
Sbjct: 73 IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPP---GDRS-RGPRHEGG-DRPRFGDRD 127
Query: 560 GYRGAPR 580
GYR PR
Sbjct: 128 GYRAGPR 134
Score = 45.4 bits (106), Expect = 6e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 283 PTCRSLSSCRAFKSQELVTERFSWRHYYWFLTNK-VH*LPARVPEPAQRDRARHPEEVQP 459
P + + ++FKS+E V E F+W HYYWFLTN+ + L + P+ A + +P
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
Query: 460 ---PPGAWPAHARRRPR 501
P G P R PR
Sbjct: 98 GGRPFGGPPGDRSRGPR 114
Score = 40.4 bits (93), Expect(3) = 4e-20
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 234 AEKDFNLKEHPEIPGVPNLQVIKLMQSLQ 320
A+KDFNL +HP I VPNLQVIKLMQS +
Sbjct: 23 AKKDFNLAKHPLID-VPNLQVIKLMQSFK 50
Score = 32.0 bits (71), Expect(3) = 4e-20
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 167 MLIPKKNRREVYKYLFKEGV 226
M+I + NR+E+ KYLFKEGV
Sbjct: 1 MIISEANRKEICKYLFKEGV 20
>ref|NP_198967.1| expressed protein [Arabidopsis thaliana]
gi|20139725|sp|Q9FFS8|R102_ARATH 40S ribosomal protein
S10-2 gi|10178006|dbj|BAB11458.1| contains similarity to
40S ribosomal protein S10~gene_id:MBK23.4 [Arabidopsis
thaliana] gi|14030699|gb|AAK53024.1|AF375440_1
AT5g41520/MBK23_4 [Arabidopsis thaliana]
gi|14335122|gb|AAK59840.1| AT5g41520/MBK23_4
[Arabidopsis thaliana] gi|16974521|gb|AAL31170.1|
AT5g41520/MBK23_4 [Arabidopsis thaliana]
Length = 180
Score = 76.3 bits (186), Expect = 3e-13
Identities = 61/144 (42%), Positives = 72/144 (49%), Gaps = 6/144 (4%)
Frame = +2
Query: 167 MLIPKKNRREVYKYLFKEGVLQCGEGLQ-PQ-----GAPGDPRRAQPAGH*AHAEPSSPR 328
M+I + NRRE+ KYLFKEGVL + PQ P +
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 329 SW*LSASPGATTTGS*PTRCIDYLREYLNLPSEIVPATLKKSNRPLERGPPMRGGDRGDR 508
+W + T G ID+LR YLNLPSEIVPATLKK +PL R P GGDR
Sbjct: 61 AW-MHYYWFLTNEG------IDFLRTYLNLPSEIVPATLKKQQKPLGR-PFGGGGDRPRG 112
Query: 509 PPRREGGFGGPREGGREGYRGAPR 580
PPR G G R G R+GYRG P+
Sbjct: 113 PPR---GDGERRFGDRDGYRGGPK 133
Score = 47.0 bits (110), Expect = 2e-04
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +1
Query: 283 PTCRSLSSCRAFKSQELVTERFSWRHYYWFLTNK-VH*LPARVPEPAQRDRARHPEEVQP 459
P + + ++FKS+E V E F+W HYYWFLTN+ + L + P++ A ++ Q
Sbjct: 39 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ-QK 97
Query: 460 PPGAWPAHARRRPRRPPAPP*GWLRWPPRGWPRGLPR 570
P G RPR PP G R+ R RG P+
Sbjct: 98 PLGRPFGGGGDRPRGPPRGD-GERRFGDRDGYRGGPK 133
Score = 45.4 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 234 AEKDFNLKEHPEIPGVPNLQVIKLMQSLQ 320
A+KDFNL +HP I VPNLQVIKLMQS +
Sbjct: 23 AKKDFNLPQHPLIESVPNLQVIKLMQSFK 51
>emb|CAD41005.1| OSJNBa0042L16.19 [Oryza sativa (japonica cultivar-group)]
Length = 183
Score = 75.1 bits (183), Expect = 7e-13
Identities = 64/163 (39%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Frame = +2
Query: 167 MLIPKKNRREVYKYLFKEGVLQCGEGLQPQGAPGDPRRAQPAGH*AHAEPSSPRSW*LSA 346
M+IPKKNR E+ KYLF+EGVL A D A+ H + P +
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLY---------AKKDYNLAK------HPQIDVPNLQVIKL 45
Query: 347 SPGATTTGS*PTRCIDYLRE---------------------YLNLPSEIVPATLKKSNRP 463
+ +Y+RE YLNLPSEIVPATLKKS RP
Sbjct: 46 MQSFKSK--------EYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97
Query: 464 LER----GPPMRGGDRGDRPPRREGGFGGPREGGREGYRGAPR 580
R GPP GDR PPR EG PR G R+GYRG PR
Sbjct: 98 PGRPFGSGPP---GDRPRGPPRFEG--DRPRFGDRDGYRGGPR 135
Score = 49.7 bits (117), Expect = 3e-05
Identities = 31/96 (32%), Positives = 41/96 (42%)
Frame = +1
Query: 283 PTCRSLSSCRAFKSQELVTERFSWRHYYWFLTNKVH*LPARVPEPAQRDRARHPEEVQPP 462
P + + ++FKS+E V E FSW++YYW+LTN D H
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTN---------------DGIEHLRNYLNL 82
Query: 463 PGAWPAHARRRPRRPPAPP*GWLRWPPRGWPRGLPR 570
P ++ RPP P G PP PRG PR
Sbjct: 83 PSEIVPATLKKSARPPGRPFG--SGPPGDRPRGPPR 116
Score = 41.2 bits (95), Expect = 0.011
Identities = 20/29 (68%), Positives = 25/29 (85%)
Frame = +3
Query: 234 AEKDFNLKEHPEIPGVPNLQVIKLMQSLQ 320
A+KD+NL +HP+I VPNLQVIKLMQS +
Sbjct: 23 AKKDYNLAKHPQID-VPNLQVIKLMQSFK 50
>ref|NP_194304.1| 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana]
gi|20139845|sp|Q9SW09|R101_ARATH 40S ribosomal protein
S10-1 gi|7440314|pir||T04228 ribosomal protein S10,
cytosolic - Arabidopsis thaliana
gi|4539292|emb|CAB39595.1| putative ribosomal protein
S10 [Arabidopsis thaliana] gi|7269424|emb|CAB81384.1|
putative ribosomal protein S10 [Arabidopsis thaliana]
gi|14334536|gb|AAK59676.1| putative ribosomal protein
S10 [Arabidopsis thaliana] gi|21281207|gb|AAM44974.1|
putative ribosomal protein S10 [Arabidopsis thaliana]
Length = 177
Score = 73.9 bits (180), Expect = 1e-12
Identities = 57/142 (40%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Frame = +2
Query: 167 MLIPKKNRREVYKYLFKEGVLQCGEGLQPQGAPGDPRRAQPAGH*AHAEPS-SPRSW*LS 343
M+I + NRRE+ KYLFKEGV + P P P S + +
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFN---LPKHPLIDVPNLQVIKLMQSFKSKEYVRE 57
Query: 344 ASPGATTTGS*PTRCIDYLREYLNLPSEIVPATLKKSNRPLER---GPPMRGGDRGDRPP 514
I++LR YLNLPS++VPATLKKS +P R GPP GDR PP
Sbjct: 58 TFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPP---GDRQRGPP 114
Query: 515 RREGGFGGPREGGREGYRGAPR 580
R +G PR G R+GYRG PR
Sbjct: 115 RSDGD--RPRFGDRDGYRGGPR 134
Score = 46.6 bits (109), Expect = 3e-04
Identities = 31/97 (31%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Frame = +1
Query: 283 PTCRSLSSCRAFKSQELVTERFSWRHYYWFLTNK-VH*LPARVPEPAQRDRARHPEEVQP 459
P + + ++FKS+E V E F+W HYYWFLTN+ + L + P+ A + +P
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
Query: 460 PPGAWPAHARRRPRRPPAPP*GWLRWPPRGWPRGLPR 570
+ R R PP R+ R RG PR
Sbjct: 98 GGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPR 134
Score = 40.4 bits (93), Expect = 0.018
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 234 AEKDFNLKEHPEIPGVPNLQVIKLMQSLQ 320
A+KDFNL +HP I VPNLQVIKLMQS +
Sbjct: 23 AKKDFNLPKHPLID-VPNLQVIKLMQSFK 50
EST assemble image
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clone |
accession |
position |
| 1 |
MX259h02_r |
BP092838 |
1 |
435 |
| 2 |
LC033c10_r |
AV621243 |
53 |
565 |
| 3 |
CM058c12_r |
AV390408 |
140 |
704 |
| 4 |
CM049a03_r |
AV389596 |
142 |
455 |
| 5 |
HC081c02_r |
AV638051 |
147 |
342 |
| 6 |
CM012c01_r |
AV387159 |
149 |
597 |
| 7 |
LC040c04_r |
AV621731 |
149 |
575 |
| 8 |
CM049h03_r |
AV389605 |
152 |
312 |
| 9 |
MX234c02_r |
BP091130 |
153 |
599 |
| 10 |
LC005d07_r |
AV619227 |
154 |
528 |
| 11 |
LC020g06_r |
AV620337 |
154 |
557 |
| 12 |
LC008c06_r |
AV619430 |
154 |
581 |
| 13 |
HCL006c09_r |
AV639864 |
154 |
566 |
| 14 |
HC071e11_r |
AV637317 |
155 |
548 |
| 15 |
MXL002a06_r |
BP093001 |
155 |
604 |
| 16 |
MXL093a08_r |
BP098418 |
155 |
573 |
| 17 |
HC013a04_r |
AV632819 |
155 |
619 |
| 18 |
LCL027f03_r |
AV627496 |
155 |
618 |
| 19 |
HC075a06_r |
AV637583 |
157 |
636 |
| 20 |
HC041c04_r |
AV635048 |
157 |
349 |
| 21 |
MX001f02_r |
BP086085 |
157 |
546 |
| 22 |
HC070b03_r |
AV637204 |
157 |
522 |
| 23 |
CL64b09_r |
AV396617 |
157 |
579 |
| 24 |
CL60e11_r |
AV396369 |
157 |
617 |
| 25 |
MX007f08_r |
BP086383 |
157 |
499 |
| 26 |
HCL043d07_r |
AV641980 |
157 |
633 |
| 27 |
CM003d04_r |
AV386560 |
158 |
629 |
| 28 |
MX203a11_r |
BP089219 |
159 |
558 |
| 29 |
HC013d11_r |
AV632851 |
159 |
582 |
| 30 |
CM088c01_r |
AV393027 |
160 |
609 |
| 31 |
CM099c08_r |
AV393111 |
160 |
439 |
| 32 |
MX234e02_r |
BP091145 |
160 |
480 |
| 33 |
CM035a06_r |
AV388734 |
160 |
676 |
| 34 |
CL35d11_r |
AV395070 |
164 |
450 |
| 35 |
MX254g04_r |
BP092479 |
173 |
497 |
| 36 |
CM074e12_r |
AV391551 |
184 |
740 |
| 37 |
HC090e03_r |
AV638764 |
192 |
573 |
| 38 |
MXL005f05_r |
BP093249 |
247 |
637 |
| 39 |
MXL087b02_r |
BP098102 |
247 |
469 |
| 40 |
LCL047g10_r |
AV628837 |
254 |
726 |
| 41 |
MXL006g11_r |
BP093324 |
254 |
551 |
| 42 |
MXL066a09_r |
BP096861 |
258 |
586 |
| 43 |
CL27b06_r |
AV394687 |
432 |
568 |
| 44 |
MX017h10_r |
BP086833 |
437 |
618 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute