KCC000358A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000358A_C01 KCC000358A_c01
gacgtctgtttgcaagtatcgattctttgttttggtgggtaggaagcacgaacacatccc
tcccaatagatatTGGGAACGTGCATGGTTGGCGAGAACGCGAAGTGAGAGCGCAACCGG
CAAACAGCCCAAGGTTTGCTTGCGCAACCTGGCGAGCGGATGATGACGCGGGGACTCGTG
GCCCGCACAGGAACTTTGAGAACTGGCCTGACGCGCCGGACATGCGGACACGCAAATAAA
GGAGTCCGGCGCTGAGGTGAACTTCGTGGTGACCCTATTGATGATGAGTTGTGTAGGTGT
TTAGTAGTCAGGTCAACCCGACCCTCCCGTAATAAAGTGAGAGGAATAAACAGACCGCGC
CGTAGTGTGCGGAGGAGTGGGCGAGCGCCATGCCCGGCGCAGGTGGGAAGTGGATGTGGA
TGCCGCGGCGCATGTGAGGGTGTAGCGGGCCGGAATGTGGGCGTGATGCGAGATATAAAC
GTGAGTCAAGGGAGCACAGTCCGAGTGTCCCCCAGCCCGCGAAGCTTTCTGCCACACCTG
AGCTGTAACAATAACATCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000358A_C01 KCC000358A_c01
         (560 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaer...    37  0.14
gb|AAB99947.1| doublesex [Bactrocera tryoni]                           36  0.31
gb|AAB99948.1| doublesex [Bactrocera tryoni]                           36  0.31
pir||C56591 E75 B steroid receptor homolog - tobacco hornworm gi...    35  0.90
sp|Q08893|E75_MANSE Ecdysone-inducible protein E75                     35  0.90

>ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaeroides]
          Length = 817

 Score = 37.4 bits (85), Expect = 0.14
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +1

Query: 319 RPSRNKVRGINRPRRSVRRSGRAPCPAQVGSGCGCRGACEGVA-----GRNVGVMRDINV 483
           R  ++++ G++     + R+ RA  P   G G   +G    +A     GR+VG  RD   
Sbjct: 22  RHGQHRLSGLHGAEARLGRAARAGDPRAGGQGASAQGLSAALADRRACGRDVGRGRDELA 81

Query: 484 SQGSTVRVSPSPRSFLPHLSCN 549
            +G T  V  +PR   PH  C+
Sbjct: 82  RRGRTRLVGRAPRRDRPHARCD 103

>gb|AAB99947.1| doublesex [Bactrocera tryoni]
          Length = 319

 Score = 36.2 bits (82), Expect = 0.31
 Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 507 HSDCAPLTHVYISHHAHIPARYTLTCAAASTSTS---HLRRAWRSPTPPHTTARSVYSSH 337
           H   A L H ++ HH H+   +  + AAA+ + +   H+  A RSP        +V SS 
Sbjct: 111 HGPTALLNHHHLHHHHHLNQNHHASAAAAAAAAAAHHHISTAIRSPPHAEHGGGNVSSSG 170

Query: 336 FITGGSG 316
            I GG G
Sbjct: 171 GIAGGIG 177

>gb|AAB99948.1| doublesex [Bactrocera tryoni]
          Length = 398

 Score = 36.2 bits (82), Expect = 0.31
 Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 507 HSDCAPLTHVYISHHAHIPARYTLTCAAASTSTS---HLRRAWRSPTPPHTTARSVYSSH 337
           H   A L H ++ HH H+   +  + AAA+ + +   H+  A RSP        +V SS 
Sbjct: 111 HGPTALLNHHHLHHHHHLNQNHHASAAAAAAAAAAHHHISTAIRSPPHAEHGGGNVSSSG 170

Query: 336 FITGGSG 316
            I GG G
Sbjct: 171 GIAGGIG 177

>pir||C56591 E75 B steroid receptor homolog - tobacco hornworm
           gi|385892|gb|AAC60499.1| E75 B [Manduca sexta]
          Length = 685

 Score = 34.7 bits (78), Expect = 0.90
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
 Frame = -1

Query: 458 TFRPATPSHAPRHPHPL-PTCAGHGARPLLRTLRRGLFIPLTLLREG---------RVDL 309
           T RP TPS  P+HPHP  P    H  RP   +L     +    L EG         R D+
Sbjct: 557 TVRP-TPSPQPQHPHPANPAHPAHSPRPQRASLSSTHSVLAKSLMEGPRMTPEQLKRTDI 615

Query: 308 TTKHLHNSSSIGSPRSSPQRRTPLFAC 228
             +++    S       P R   L  C
Sbjct: 616 IQQYMRRGESSAPAEGCPLRAGGLLTC 642

>sp|Q08893|E75_MANSE Ecdysone-inducible protein E75
          Length = 699

 Score = 34.7 bits (78), Expect = 0.90
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
 Frame = -1

Query: 458 TFRPATPSHAPRHPHPL-PTCAGHGARPLLRTLRRGLFIPLTLLREG---------RVDL 309
           T RP TPS  P+HPHP  P    H  RP   +L     +    L EG         R D+
Sbjct: 571 TVRP-TPSPQPQHPHPANPAHPAHSPRPQRASLSSTHSVLAKSLMEGPRMTPEQLKRTDI 629

Query: 308 TTKHLHNSSSIGSPRSSPQRRTPLFAC 228
             +++    S       P R   L  C
Sbjct: 630 IQQYMRRGESSAPAEGCPLRAGGLLTC 656



EST assemble image


clone accession position
1 CL62e11_r AV396449 1 441
2 CL21h03_r AV394345 74 566
3 HCL051e06_r AV642422 138 653




Chlamydomonas reinhardtii
Kazusa DNA Research Institute