KCC000349A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000349A_C01 KCC000349A_c01
ccgccaaagggccagtgattatcgtattaggacggtgcccggactaccaagtgcatgtga
aggagttaggagtgggtgagGGATGCAGATGCACGAAACCTGGGGGAACCTGCCCTGCAC
GGAACTGCATAGCCAGGTGGTAAGATATTAGGAGCACAGGGGACCGTGAGTGCCAGGCAT
CCTAGGGAACGAGCGCATCCTAGCTGCAAGCTAGGTGACGATGGGCCGTGAGGTTTGCGC
TGCATGTCCTAGGTGACGGTGTTACAAGCAGGCGTGGTATGCAACGGGTGCGATAAGGGT
GCGATGGGACATGGCAAGGGGCAGGTTGGCGTAGTCCAACGTGCAGTGGTTGCAATGGGA
CAGGGCAAAGTGGCTGATATAGCAGAGTCCCAAGAAACAAATTGCACCCAGCCCAAGCAT
CGACCTGCAATGGGTGTTGGATGACACTGTGCTTGAGCCCAACCTTCTTAACATTATCGC
ACAGGGGCCCTGGCAGAACGTCAGGGCTTTGGGCAGCAGGGACTCGAAGCGAGGAAGagc
cggtatgccttcaggcggtacacggcaagaagatgtgcagctctttgacggcaagcacgt
gtaaggtccacgtgacc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000349A_C01 KCC000349A_c01
         (617 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB15254.1| unnamed protein product [Homo sapiens]                 41  0.016
dbj|BAC85504.1| unnamed protein product [Homo sapiens]                 38  0.13
ref|NP_044058.1| MC107L [Molluscum contagiosum virus] gi|7514654...    37  0.30
pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Dro...    36  0.51
dbj|BAB70509.1| DNAJ homologue [Oryza sativa]                          36  0.51

>dbj|BAB15254.1| unnamed protein product [Homo sapiens]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 34/88 (38%), Positives = 38/88 (42%), Gaps = 5/88 (5%)
 Frame = -1

Query: 350 TTARWTTPTCPLPCPIAPLSHPLHTTPACNTVT*DMQRKPHGP---SSPSLQLGCARSLG 180
           TT    TP CP PCP+     PL TTP   T +      P  P   +SP LQ   +  L 
Sbjct: 46  TTPHLETPPCPAPCPLQAPPSPL-TTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLS 104

Query: 179 CLALTVPCAPN--ILPPGYAVPCRAGSP 102
            LA   P AP    LPP  A P    SP
Sbjct: 105 PLATPPPQAPPALALPPLQAPPSPPASP 132

>dbj|BAC85504.1| unnamed protein product [Homo sapiens]
          Length = 814

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 41/142 (28%), Positives = 53/142 (36%), Gaps = 22/142 (15%)
 Frame = -1

Query: 458 AQAQCHPTPIAGRCLGWVQ----FVSWDSAISATLPCPIATTARWTTPTCPLPCPIAPLS 291
           A+ Q  P     RC   +     FV  +S      PC             P PCP AP +
Sbjct: 526 ARPQSGPGQCCPRCPDCILEEEVFVDGESFSHPRDPCQECRCQEGHAHCQPRPCPRAPCA 585

Query: 290 HPLHTTPA---CNTVT*DMQRKPHG-----PSSPSLQLGC-ARSLGCLA---LTVPCAPN 147
           HPL  T     C+      +  P G     PS P     C + ++ CLA   + +PC   
Sbjct: 586 HPLPGTCCPNDCSGCAFGGKEYPSGADFPHPSDPCRLCRCLSGNVQCLARRCVPLPCPEP 645

Query: 146 ILPPGY------AVPCRAGSPR 99
           +L PG       A P  AG PR
Sbjct: 646 VLLPGECCPQCPAAPAPAGCPR 667

>ref|NP_044058.1| MC107L [Molluscum contagiosum virus] gi|7514654|pir||T30709 core
           protein homolog 107L - Molluscum contagiosum virus 1
           gi|1492050|gb|AAC55235.1| MC107L [Molluscum contagiosum
           virus subtype 1]
          Length = 421

 Score = 36.6 bits (83), Expect = 0.30
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -1

Query: 383 AISATLPCPIATTARWTTPTCPLPCPIAPLSHPL----HTTPACNTVT*DMQRKPHGPSS 216
           AI+A   CP+  TA      CP+P P++ L         +T AC+ +   +  +P  P  
Sbjct: 96  AIAAAQTCPMPATAPAAAQACPMPGPVSSLGTTTCPMPESTSACSALATTLPTRPPVPPR 155

Query: 215 PSL 207
           PS+
Sbjct: 156 PSI 158

>pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Drosophila
           virilis) gi|433482|emb|CAA53796.1| major larval glue
           protein [Drosophila virilis] gi|450903|emb|CAA82672.1|
           glue protein [Drosophila virilis]
           gi|1091592|prf||2021274B glue protein
          Length = 232

 Score = 35.8 bits (81), Expect = 0.51
 Identities = 18/42 (42%), Positives = 20/42 (46%)
 Frame = -1

Query: 377 SATLPCPIATTARWTTPTCPLPCPIAPLSHPLHTTPACNTVT 252
           + T PCP  TT R TT T   PCP    +    TTP   T T
Sbjct: 77  TTTTPCPTTTTTRTTTTTTTTPCPTTTTTRTT-TTPTTTTRT 117

>dbj|BAB70509.1| DNAJ homologue [Oryza sativa]
          Length = 436

 Score = 35.8 bits (81), Expect = 0.51
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +3

Query: 300 CDGTWQGAGWRSPTCSGCNGTGQSG*YSRVPRNKLHPAQASTCNGC 437
           CDGT    G +  TC  C G GQ    +R P       Q STCN C
Sbjct: 233 CDGTGAKPGTKPTTCKTCGGQGQVVSSTRTPLGIFQ--QVSTCNTC 276



EST assemble image


clone accession position
1 CL21c04_r AV394394 1 492
2 LCL012e02_r AV626624 175 617




Chlamydomonas reinhardtii
Kazusa DNA Research Institute