Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000344A_C01 KCC000344A_c01
(1284 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas... 350 e-119
gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Vol... 194 8e-58
ref|NP_175137.1| light-harvesting chlorophyll a/b binding protei... 147 2e-49
gb|AAM65689.1| light-harvesting complex protein [Arabidopsis tha... 147 2e-49
pir||T52328 chlorophyll a/b-binding protein Lhca5, photosystem I... 147 2e-49
>gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 350 bits (899), Expect(2) = e-119
Identities = 168/168 (100%), Positives = 168/168 (100%)
Frame = +2
Query: 263 VHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 442
VHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 443 KRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKN 622
KRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKN
Sbjct: 134 KRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKN 193
Query: 623 GRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATNGVSIPIA 766
GRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATNGVSIPIA
Sbjct: 194 GRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATNGVSIPIA 241
Score = 102 bits (255), Expect(2) = e-119
Identities = 51/65 (78%), Positives = 55/65 (84%)
Frame = +1
Query: 67 AGPVLSRLARPLALSAPRLPVRPVWFPGNPPPAHLDGSLAGDYGFEPLFLGQEPQTLKWY 246
AG +R A P A+ A + VRPVWFPGNPPPAHLDGSLAGDYGF+PLFLGQEPQTLKWY
Sbjct: 11 AGAFSARQA-PRAVRA-QAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWY 68
Query: 247 VQAEL 261
VQAEL
Sbjct: 69 VQAEL 73
Score = 60.1 bits (144), Expect = 8e-08
Identities = 32/40 (80%), Positives = 32/40 (80%)
Frame = +3
Query: 42 MALSMIAQRRAGAFSARQAPRAVRAQAACPPRVVPRQPSP 161
MALSMIAQRRAGAFSARQAPRAVRAQAA P P P P
Sbjct: 1 MALSMIAQRRAGAFSARQAPRAVRAQAAVRPVWFPGNPPP 40
>gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 194 bits (494), Expect(2) = 8e-58
Identities = 101/169 (59%), Positives = 122/169 (71%), Gaps = 3/169 (1%)
Frame = +2
Query: 263 VHGRFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAE 439
VH R AM AGI++ + K G L PEWYDAGKV +E + F L+ +Q +L G+ E
Sbjct: 75 VHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALLAVQLFLTGFVE 134
Query: 440 TKRWYDFKNPGSQAD-GSFLGFTEEFKGL-ENGYPGGRFFDPMGLSRGDAAKYQEYKQKE 613
KRW DFK PGSQA+ GSFLGF F G +NGYPGG FDP+GLS+ DA K ++K KE
Sbjct: 135 AKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGLSK-DADKLADWKLKE 192
Query: 614 VKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATNGVSIP 760
+KNGRLAM+A LGF AQ ATGKGP+DNLA HLADP HVN+A+NGVS+P
Sbjct: 193 IKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVNYASNGVSVP 241
Score = 53.1 bits (126), Expect(2) = 8e-58
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Frame = +1
Query: 64 SAGPVLSRLARPLALSAPRLPVRPVWFPGNPPPAHLDG----SLAGDYGFEPLFLGQEPQ 231
+A P +SR A ++ R W PG+ P HLD ++AG++GF+PL LG++ +
Sbjct: 11 AARPAVSRKAVVTCVA------RQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAE 64
Query: 232 TLKWYVQAEL 261
L+WY QAEL
Sbjct: 65 ALRWYQQAEL 74
>ref|NP_175137.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|30693978|ref|NP_849778.1| light-harvesting
chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|25299021|pir||F96510 light-harvesting complex protein
[imported] - Arabidopsis thaliana
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting
complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4
[Arabidopsis thaliana] gi|19699116|gb|AAL90924.1|
At1g45474/F2G19.4 [Arabidopsis thaliana]
Length = 256
Score = 147 bits (371), Expect(2) = 2e-49
Identities = 82/161 (50%), Positives = 106/161 (64%), Gaps = 6/161 (3%)
Frame = +2
Query: 263 VHGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFP---TLMVIQFYLMG 430
VH RFAMLG AGI+ T + G+ P WY+AG V DF TL+V+QF LMG
Sbjct: 90 VHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAV-----KFDFASTKTLIVVQFLLMG 144
Query: 431 WAETKRWYDFKNPGSQA-DGSFL-GFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYK 604
+AETKR+ DF +PGSQA +GSF G +GLE GYPGG +P+GL++ D ++K
Sbjct: 145 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWK 203
Query: 605 QKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 727
KE+KNGRLAM+A LGF Q + T GP+DNL +HL++P H
Sbjct: 204 LKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWH 244
Score = 72.8 bits (177), Expect(2) = 2e-49
Identities = 30/44 (68%), Positives = 37/44 (83%)
Frame = +1
Query: 130 RPVWFPGNPPPAHLDGSLAGDYGFEPLFLGQEPQTLKWYVQAEL 261
R W PG PP +LDG+LAGDYGF+PL LG++P++LKWYVQAEL
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAEL 89
>gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 147 bits (371), Expect(2) = 2e-49
Identities = 82/161 (50%), Positives = 106/161 (64%), Gaps = 6/161 (3%)
Frame = +2
Query: 263 VHGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFP---TLMVIQFYLMG 430
VH RFAMLG AGI+ T + G+ P WY+AG V DF TL+V+QF LMG
Sbjct: 90 VHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAV-----KFDFASTKTLIVVQFLLMG 144
Query: 431 WAETKRWYDFKNPGSQA-DGSFL-GFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYK 604
+AETKR+ DF +PGSQA +GSF G +GLE GYPGG +P+GL++ D ++K
Sbjct: 145 FAETKRYMDFVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAK-DVKNAHDWK 203
Query: 605 QKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 727
KE+KNGRLAM+A LGF Q + T GP+DNL +HL++P H
Sbjct: 204 LKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWH 244
Score = 72.8 bits (177), Expect(2) = 2e-49
Identities = 30/44 (68%), Positives = 37/44 (83%)
Frame = +1
Query: 130 RPVWFPGNPPPAHLDGSLAGDYGFEPLFLGQEPQTLKWYVQAEL 261
R W PG PP +LDG+LAGDYGF+PL LG++P++LKWYVQAEL
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAEL 89
>pir||T52328 chlorophyll a/b-binding protein Lhca5, photosystem I [imported] -
Arabidopsis thaliana gi|4741942|gb|AAD28768.1|AF134121_1
Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 147 bits (371), Expect(2) = 2e-49
Identities = 82/161 (50%), Positives = 106/161 (64%), Gaps = 6/161 (3%)
Frame = +2
Query: 263 VHGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFP---TLMVIQFYLMG 430
VH RFAMLG AGI+ T + G+ P WY+AG V DF TL+V+QF LMG
Sbjct: 90 VHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAV-----KFDFACTKTLIVVQFLLMG 144
Query: 431 WAETKRWYDFKNPGSQA-DGSFL-GFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYK 604
+AETKR+ DF +PGSQA +GSF G +GLE GYPGG +P+GL++ D ++K
Sbjct: 145 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWK 203
Query: 605 QKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 727
KE+KNGRLAM+A LGF Q + T GP+DNL +HL++P H
Sbjct: 204 LKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWH 244
Score = 72.8 bits (177), Expect(2) = 2e-49
Identities = 30/44 (68%), Positives = 37/44 (83%)
Frame = +1
Query: 130 RPVWFPGNPPPAHLDGSLAGDYGFEPLFLGQEPQTLKWYVQAEL 261
R W PG PP +LDG+LAGDYGF+PL LG++P++LKWYVQAEL
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAEL 89
