KCC000336A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000336A_C01 KCC000336A_c01
ttaccaacTTGCAGCCCATTTATTGCGCGTGCATTTTTCTGCATACTGAAGCGCATTAGT
AGCCATTTCGTGGACAACGTCAGGGCTGCGGTCGACGCCGTGAAAATGCATAATACCTTA
GCACTTCTGCTTATAAAACCAATGCTCTCACCGGTTCAGCCTCGGCCAGCGGTGGTAAGG
GCTCACAATGCCCAAAAACATCAAGCAGAGGTTTGAGCTTATCAGAGTCATCAAGCGAGC
TATGGCTACATCAACAATAGGAGGGACAGGAACAGATTCAAGCGTTGTGGCTCTGACGGT
GCAGCCGAGCTTAAGCACACTCAACAGCGAGTTGCCCCTTGTGCCGAGCGAGGCTGCGAG
CAGCGATCCGCAGAGCAACACTAGTACTGCAAAGGCAAATGGAGACAAGCACGGGCGCCG
GGGGCGGCCCTCTATGTCGCCAGACATCCGCGAGCTGTTCTCGAGGCAACTGTGGTACCG
GGAAACCAAGCGCCGGCTGAAAAAGTTCCGCCCCAAGGACGTCTGGGCGACCCTCATTCA
GGAGCGCTGGACCATCCTGGTCACAGGGATTTTCGCATCGGGGCTCTTGGCGCTGGAGCT
CACAGCGTGGAGCGATCTGTCCACGGACGCCTGGTTCACGCTGTGGACCACCTTCGCGGC
AGTGGTGCCCATGATCCGCGGCGTGGTGGACGCCGACGTGTGCCTGTTCGCAGCCTCCAC
GCTGCTGCTGCTGCGCGGCATCATCCAAGCGCGCGACGCCTTCGCGGGTCTGGCCAACGA
CTCCATTGTGTCGATTGCGCTGATGATGATGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000336A_C01 KCC000336A_c01
         (812 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regula...    90  4e-17
ref|ZP_00013649.1| COG0645: Predicted kinase [Rhodospirillum rub...    47  4e-04
ref|ZP_00091011.1| COG2897: Rhodanese-related sulfurtransferase ...    45  0.001
gb|AAD31829.1| NapG oxidoreductase [Streptomyces collinus]             40  0.045
ref|ZP_00120241.1| COG0719: ABC-type transport system involved i...    40  0.045

>sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regulator
           gi|2129463|pir||S69216 sulfur deprivation response
           regulator sac1 - Chlamydomonas reinhardtii
           gi|1197733|gb|AAB08008.1| sulfur deprivation response
           regulator
          Length = 585

 Score = 90.1 bits (222), Expect = 4e-17
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = +2

Query: 671 MIRGVVDADVCLFAASTLLLLRGIIQARDAFAGLANDSIVSIALMMM 811
           MIRGVVDADVCLFAASTLLLLRGIIQARDAFAGLANDSIVSIALMMM
Sbjct: 1   MIRGVVDADVCLFAASTLLLLRGIIQARDAFAGLANDSIVSIALMMM 47

>ref|ZP_00013649.1| COG0645: Predicted kinase [Rhodospirillum rubrum]
          Length = 759

 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 45/123 (36%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
 Frame = +3

Query: 429 PLCRQTSASCSRGNCGTGKPSAG*K------SSAPRTSGRPSFRSAGPS-WSQGFSHRGS 587
           P CR +SA     +   G PS+         SS P T GRPS  S  P  W    S R S
Sbjct: 11  PSCRPSSACHRTSSSSAGPPSSSPSCACSSPSSCPST-GRPSASSCRPCRWG---SFRRS 66

Query: 588 W-RWSSQRGAICPRTPGSRCGPPSRQWCP*SAAWWTPTCACSQPPRCCCCAASSKRATPS 764
           W R SS       R   S  G PS      SAA WTP+   S  P     AASS  +  S
Sbjct: 67  WYRSSSASSGASSRPSSSASGRPSAS----SAASWTPSSGASWTPSSASFAASSAASGAS 122

Query: 765 RVW 773
             W
Sbjct: 123 WRW 125

>ref|ZP_00091011.1| COG2897: Rhodanese-related sulfurtransferase [Azotobacter
           vinelandii]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 52/179 (29%), Positives = 65/179 (36%), Gaps = 14/179 (7%)
 Frame = +1

Query: 298 GAAELKHTQQRVAPCAERGCEQRSAEQH*YCKGKWRQARAPGAALYVARHP--RAVLEAT 471
           G  + +  + R+ P A   C+      H    G+ R  R P AA      P  R      
Sbjct: 12  GGGQRRPDRHRLRPAARAPCQP-----HRPLPGRRRARRHPPAAAAEQGRPGERGKRRRP 66

Query: 472 VVPGNQAPAEKVPPQGRLGDP---HSGALDHPG------HRDFRIGALGAGAHSVERSVH 624
             P    PA ++PP G LG P   H+G     G       R  R G + AG  S  R  H
Sbjct: 67  RRPARHLPASRLPPAGGLGPPGRRHAGTAGGAGRSCQRLRRPVRGGQVVAGQQSAARGRH 126

Query: 625 GRLVHAVDHLRGSGAHDPRRG---GRRRVPVRSLHAAAAARHHPSARRLRGSGQRLHCV 792
            R        +G   H  R      RRR   R+   A   R  P  R+ RG   RLH V
Sbjct: 127 PRRRPLGTDRQGHAHHHHRPAVPFSRRR---RTDRLARHPRVQPRPRQTRGCRGRLHRV 182

>gb|AAD31829.1| NapG oxidoreductase [Streptomyces collinus]
          Length = 341

 Score = 40.0 bits (92), Expect = 0.045
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
 Frame = +3

Query: 465 GNCGTGKPSAG*KSSAPRTSGRP---------SFRSAGPSWSQGFSHRGSWRWSSQRGAI 617
           G+ G  +P+A   S++  TS  P         S R + PS +   +     R  + RGA 
Sbjct: 157 GSPGAARPAAAPWSTSAGTSWTPRPPCSARPRSTRPSAPSRTTSSTPASGPRLPAPRGAA 216

Query: 618 CPRTPGSRCGPPSRQ-WCP*SAAWWTPTCACSQPPRCCCCAASSKRATPSRVWPTTP 785
            P +P +  GP +R+  CP     W+ + A   PP C   +AS+   +PS   P++P
Sbjct: 217 SP-SPSAPVGPRTRRRTCP-----WSGSRAAPAPPNCAAPSASAPTGSPS---PSSP 264

>ref|ZP_00120241.1| COG0719: ABC-type transport system involved in Fe-S cluster
           assembly, permease component [Bifidobacterium longum
           DJO10A]
          Length = 700

 Score = 40.0 bits (92), Expect = 0.045
 Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
 Frame = +1

Query: 502 KVPPQGRL-GDPHSGAL--DHPGHRDFRIGALGAGAHSVERSVHGRLVHAVDHLRGSGAH 672
           ++  +GR  G P +G L   HPGH   R  A   G   + R++ GRL H  D +RG  A 
Sbjct: 7   RIRAEGRACGHPAAGVLPHQHPGHGSVRAHAHHRGRRLL-RALRGRL-HRPDLVRGLAAR 64

Query: 673 DPRRGGRRRVPVRSLHAAA------AARHHPSARRLR----GSGQRLH 786
             RR  RR+    +LH  A          HP+  R R    G G+R H
Sbjct: 65  RHRRDHRRKARPCALHHRAELVEQRLQPRHPACLRARGRHDGMGRRQH 112



EST assemble image


clone accession position
1 LCL077f05_r AV630347 1 486
2 CL20b12_r AV394290 9 496
3 LCL027h01_r AV627512 9 424
4 LCL010b02_r AV626493 22 515
5 LCL065g03_r AV629768 120 531
6 LCL008g03_r AV626416 124 619
7 LCL021c04_r AV627109 289 577
8 LCL056f12_r AV629330 291 812




Chlamydomonas reinhardtii
Kazusa DNA Research Institute