KCC000332A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000332A_C01 KCC000332A_c01
CGTCACGTCGTTATTGAATTCTATTAAGTGGTTTAACCGTAGGTAGCAGCCATGCTTCTC
AAGGGCATTACAACCCCGATGCTGGGGCAGCAGCGCCCCACTCGCGGCCAGCTGCACGTC
GTGAACGTGGCTACGCCCTCCAAGAATCCCTCCTCTCGCCTGGCGAAGCGCAGCAAGGTG
GAGATTATTAAGGAGAAGAGCGACTACCTGCGGCACCCACTCATGGAGGAGCTGGTTAAC
GACGCCACCTTCATCACCGAGGACTCGGTGCAGCTCATGAAGTTCCACGGCTCGTACCAG
CAGGACCACCGCGAGAAGCGCGCGTTTGGTCAGGGCAAGGCTTACTGCTTTATGATGCGC
ACGCGTCAGCCCGCTGGTGTCGTGCCCAACCGCCTGTACCTGGTGATGGACGACCTGGCC
GATCAGTACGGCAACGGCACGCTGCGCCTGACTACGCGCCAGGCCTACCAGCTGCACGGC
GTGCTGAAGAAGGACCTCAAGACGGTGTTCAGCTCCGTCATCAAGAACATGGGATCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000332A_C01 KCC000332A_c01
         (538 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK82552.1| AT5g04590/T32M21_190 [Arabidopsis thaliana] gi|23...   174  9e-43
dbj|BAA33531.1| Sulfite Reductase [Nicotiana tabacum] gi|3738234...   174  9e-43
pir||JE0260 sulfite reductase (ferredoxin) (EC 1.8.7.1) - common...   174  9e-43
ref|NP_196079.1| sulphite reductase [Arabidopsis thaliana] gi|11...   174  9e-43
pir||S71437 sulfite reductase (ferredoxin) (EC 1.8.7.1) precurso...   174  9e-43

>gb|AAK82552.1| AT5g04590/T32M21_190 [Arabidopsis thaliana]
           gi|23308385|gb|AAN18162.1| At5g04590/T32M21_190
           [Arabidopsis thaliana]
          Length = 416

 Score =  174 bits (440), Expect = 9e-43
 Identities = 87/137 (63%), Positives = 114/137 (82%)
 Frame = +1

Query: 127 VATPSKNPSSRLAKRSKVEIIKEKSDYLRHPLMEELVNDATFITEDSVQLMKFHGSYQQD 306
           V+TP+K  ++   KRSKVEIIKEKS+++R+PL EEL+ +A  + E +VQL+KFHGSYQQ 
Sbjct: 62  VSTPAKPETA--TKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQY 119

Query: 307 HREKRAFGQGKAYCFMMRTRQPAGVVPNRLYLVMDDLADQYGNGTLRLTTRQAYQLHGVL 486
           +RE+R    G++Y FM+RT+ P+G VPN+LYL MDDLAD++G GTLRLTTRQ +QLHGVL
Sbjct: 120 NREERG---GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQLHGVL 176

Query: 487 KKDLKTVFSSVIKNMGS 537
           K++LKTV SS+IKNMGS
Sbjct: 177 KQNLKTVMSSIIKNMGS 193

>dbj|BAA33531.1| Sulfite Reductase [Nicotiana tabacum] gi|3738234|dbj|BAA33796.1|
           sulfite reductase [Nicotiana tabacum]
          Length = 693

 Score =  174 bits (440), Expect = 9e-43
 Identities = 88/137 (64%), Positives = 112/137 (81%)
 Frame = +1

Query: 127 VATPSKNPSSRLAKRSKVEIIKEKSDYLRHPLMEELVNDATFITEDSVQLMKFHGSYQQD 306
           V+TP+K P++   KRSKVEI KE+S+++R+PL EE++NDA  I E + QL+KFHGSY Q 
Sbjct: 60  VSTPAK-PAAVEPKRSKVEIFKEQSNFIRYPLNEEILNDAPNINEAATQLIKFHGSYMQY 118

Query: 307 HREKRAFGQGKAYCFMMRTRQPAGVVPNRLYLVMDDLADQYGNGTLRLTTRQAYQLHGVL 486
            R++R    G++Y FM+RT+ P G VPNRLYLVMDDLADQ+G GTLRLTTRQ +QLHGVL
Sbjct: 119 DRDERG---GRSYSFMLRTKNPGGEVPNRLYLVMDDLADQFGIGTLRLTTRQTFQLHGVL 175

Query: 487 KKDLKTVFSSVIKNMGS 537
           KK+LKTV S++IKNMGS
Sbjct: 176 KKNLKTVMSTIIKNMGS 192

>pir||JE0260 sulfite reductase (ferredoxin) (EC 1.8.7.1) - common tobacco
          Length = 693

 Score =  174 bits (440), Expect = 9e-43
 Identities = 88/137 (64%), Positives = 112/137 (81%)
 Frame = +1

Query: 127 VATPSKNPSSRLAKRSKVEIIKEKSDYLRHPLMEELVNDATFITEDSVQLMKFHGSYQQD 306
           V+TP+K P++   KRSKVEI KE+S+++R+PL EE++NDA  I E + QL+KFHGSY Q 
Sbjct: 60  VSTPAK-PAAVEPKRSKVEIFKEQSNFIRYPLNEEILNDAPNINEAATQLIKFHGSYMQY 118

Query: 307 HREKRAFGQGKAYCFMMRTRQPAGVVPNRLYLVMDDLADQYGNGTLRLTTRQAYQLHGVL 486
            R++R    G++Y FM+RT+ P G VPNRLYLVMDDLADQ+G GTLRLTTRQ +QLHGVL
Sbjct: 119 DRDERG---GRSYSFMLRTKNPGGEVPNRLYLVMDDLADQFGIGTLRLTTRQTFQLHGVL 175

Query: 487 KKDLKTVFSSVIKNMGS 537
           KK+LKTV S++IKNMGS
Sbjct: 176 KKNLKTVMSTIIKNMGS 192

>ref|NP_196079.1| sulphite reductase [Arabidopsis thaliana] gi|11254834|pir||T48455
           sulfite reductase (ferredoxin) (EC 1.8.7.1) precursor
           [similarity] - Arabidopsis thaliana
           gi|7406463|emb|CAB85565.1| sulphite reductase
           [Arabidopsis thaliana]
           gi|11762202|gb|AAG40379.1|AF325027_1 AT5g04590
           [Arabidopsis thaliana]
          Length = 642

 Score =  174 bits (440), Expect = 9e-43
 Identities = 87/137 (63%), Positives = 114/137 (82%)
 Frame = +1

Query: 127 VATPSKNPSSRLAKRSKVEIIKEKSDYLRHPLMEELVNDATFITEDSVQLMKFHGSYQQD 306
           V+TP+K  ++   KRSKVEIIKEKS+++R+PL EEL+ +A  + E +VQL+KFHGSYQQ 
Sbjct: 62  VSTPAKPETA--TKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQY 119

Query: 307 HREKRAFGQGKAYCFMMRTRQPAGVVPNRLYLVMDDLADQYGNGTLRLTTRQAYQLHGVL 486
           +RE+R    G++Y FM+RT+ P+G VPN+LYL MDDLAD++G GTLRLTTRQ +QLHGVL
Sbjct: 120 NREERG---GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQLHGVL 176

Query: 487 KKDLKTVFSSVIKNMGS 537
           K++LKTV SS+IKNMGS
Sbjct: 177 KQNLKTVMSSIIKNMGS 193

>pir||S71437 sulfite reductase (ferredoxin) (EC 1.8.7.1) precursor - Arabidopsis
           thaliana gi|804953|emb|CAA89154.1| sulfite reductase
           [Arabidopsis thaliana]
          Length = 642

 Score =  174 bits (440), Expect = 9e-43
 Identities = 87/137 (63%), Positives = 114/137 (82%)
 Frame = +1

Query: 127 VATPSKNPSSRLAKRSKVEIIKEKSDYLRHPLMEELVNDATFITEDSVQLMKFHGSYQQD 306
           V+TP+K  ++   KRSKVEIIKEKS+++R+PL EEL+ +A  + E +VQL+KFHGSYQQ 
Sbjct: 62  VSTPAKPETA--TKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQY 119

Query: 307 HREKRAFGQGKAYCFMMRTRQPAGVVPNRLYLVMDDLADQYGNGTLRLTTRQAYQLHGVL 486
           +RE+R    G++Y FM+RT+ P+G VPN+LYL MDDLAD++G GTLRLTTRQ +QLHGVL
Sbjct: 120 NREERG---GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQLHGVL 176

Query: 487 KKDLKTVFSSVIKNMGS 537
           K++LKTV SS+IKNMGS
Sbjct: 177 KQNLKTVMSSIIKNMGS 193



EST assemble image


clone accession position
1 HCL057a10_r AV642740 1 479
2 HCL065d12_r AV643196 1 276
3 CL23b05_r AV394500 1 522
4 HCL085b01_r AV644267 4 507
5 HCL023h06_r AV640872 7 272
6 CL59h02_r AV397890 8 538
7 CL19h12_r AV394194 17 433
8 LCL043h08_r AV628571 18 454
9 HCL047d03_r AV642203 22 360
10 HCL009e05_r AV640055 68 280




Chlamydomonas reinhardtii
Kazusa DNA Research Institute