KCC000329A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000329A_C01 KCC000329A_c01
aaacCCGCGGTCCCAAAACATTCTCCTAGCTCTGTTATTTGTGCTACCTATAAGCTGAGG
GCGCTAATCGACACTGCTGGCTGACAGCATACGCTTTAGATGCCGCCCGCGTGTGGGCTA
GTTCAAGGCGACGCCAGCTGGAGACTAAACACTAGCAAGGAGATGCAGTTCGACGACGGC
GCAGGCGCTATGGACGACGCGGTTCGGGCAGCGGGCGATGCGCTCGGCGCCCGTCGCCCG
CCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGGTGGCAGAGCGCT
ATCAACAGTTCTGGCAAGCACGTGTAACCTGGGGAGCTTTGATACGGAGGAGGAGGCTGC
GCGCATGTTTGACAAGGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCC
GGTCGAGGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCCCG
CCTGGAGGCCGTGGTGCGGGAGGCGCGCCGGGCGCTTATGGACAAGCAGCAGCAGCGCGC
CGGCGAGGCTCTGGACATGGGCGGCGCAGGTGCCGGCATGCCCGGCCACTACGGCTACTA
CGCACCGCTGAGCGGCCTTGCCGCCGCGCCACTGGCACTGCCGGCGCCGCTGCCGCTGCC
GTCCCCGCCGCTGCTGGGCGGTCACCCGCATTCCCACGGCGACGCTGACGGCGGCCTGTT
TGCCAAGCGCCGCCGCTACGACCTGCCCTACGGCTCAGAGCACGGCGGCCCGGTGCTGGA
GCTGAGCAAACCGCCCGCCACCGCCGGCCTGCGCCCCGCTCAGTACCCCCCGCAGTACCC
GCCCCATTACCAGCAGCAGTACCCGCCAGCGTACCAACAGCAGCAGCAGTACCAGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000329A_C01 KCC000329A_c01
(896 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor gi|85... 61 2e-08
ref|ZP_00136907.1| COG0532: Translation initiation factor 2 (IF-... 59 1e-07
ref|ZP_00136909.1| COG0532: Translation initiation factor 2 (IF-... 59 1e-07
ref|ZP_00136911.1| COG2885: Outer membrane protein and related p... 59 1e-07
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 59 1e-07
>sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor gi|85255|pir||S01360 salivary
glue protein sgs-3 precursor - fruit fly (Drosophila
yakuba)
Length = 263
Score = 61.2 bits (147), Expect = 2e-08
Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Frame = +3
Query: 366 CLTRSPFECAAAKPNSTSRSRTTSAPTASCCPPTPPTPAWRPWCGRRAGRLWTSSSSAPA 545
C T SP C P T TT+ T +C PPT P P P T+ S
Sbjct: 28 CPTTSPKPCQTTVP--TCAPTTTTTTTTTCAPPTRPPPP--PCTDAPTTTKRTTEKSTTR 83
Query: 546 RLWTWAAQVPACPATTATTHR*AALPP------RHWHCRRRCRCRPRRCWAVTRIPTATL 707
R T Q P TT TT P RH RP TR PT T
Sbjct: 84 RTTTTTRQTTTRPTTTTTTTTTTRRPTTRSTTTRHTTTTTTTTRRPTTTTTTTRRPTTTT 143
Query: 708 TAACLPSAAATT--CPTAQSTAARCWS*ANRPPPPACAPLSTPRSTRPITSSSTRQRTNS 881
T P+ TT PT +ST R + + P +T + T+++TR+ T +
Sbjct: 144 TTTRRPTTTTTTTRLPTTRSTTTRHTTKSTTSKRPTHETTTTSKRPTQETTTTTRRATQA 203
Query: 882 SSS 890
+++
Sbjct: 204 TTT 206
Score = 39.3 bits (90), Expect = 0.090
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = +3
Query: 636 HCRRRCRCRPRRCWAVTRIPTATLTAACLPSAAATTCPTAQSTAARCWS*ANRPPPPAC- 812
H + C C C + P T C P+ TT T RPPPP C
Sbjct: 19 HVAQGCDCG---CPTTSPKPCQTTVPTCAPTTTTTTTTTCAPPT--------RPPPPPCT 67
Query: 813 -APLSTPR----STRPITSSSTRQRTNSSSSTS 896
AP +T R ST T+++TRQ T ++T+
Sbjct: 68 DAPTTTKRTTEKSTTRRTTTTTRQTTTRPTTTT 100
>ref|ZP_00136907.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 861
Score = 58.9 bits (141), Expect = 1e-07
Identities = 53/141 (37%), Positives = 63/141 (44%)
Frame = -1
Query: 839 GTAGGTERGAGRRWRAVCSAPAPGRRALSRRAGRSGGAWQTGRRQRRRGNAGDRPAAAGT 660
G A G R A RR + PG +RRAGR GG RR+ R DRP AAG
Sbjct: 116 GKAEGPARTAARRLQG-----RPG----ARRAGRLGGRGAR-RRRTRPARPADRPGAAGR 165
Query: 659 AAAAAPAVPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRAAAACP*APGAPPAPRPPG 480
A P + G++A+R SR GR + R P P RR A AP AP R G
Sbjct: 166 DRAELPRG--LGQPGQAALRLSRPGRPGKDARLPEERPGRRPATRRT-APRAPLLRRQVG 222
Query: 479 GGRRGRRAAAGRRGRRSPRPG 417
+ AA +GRR PG
Sbjct: 223 AAGPAQGRAAPAQGRRQRTPG 243
Score = 42.0 bits (97), Expect = 0.014
Identities = 63/202 (31%), Positives = 69/202 (33%), Gaps = 49/202 (24%)
Frame = -1
Query: 881 AVGTLAGTAAGNGAGTAGGTERGAGRR-WRAVCSAPAPG-----RRALSRRAGRSGGAWQ 720
A L G AG GG RGA RR R A PG R L R G+ G Q
Sbjct: 125 AARRLQGRPGARRAGRLGG--RGARRRRTRPARPADRPGAAGRDRAELPRGLGQPG---Q 179
Query: 719 TGRRQRRRGNAG-------DRPAAAGTAAAAAPAVPVARRQ--------GRSAVRSSRSG 585
R R G G +RP AP P+ RRQ GR+A R
Sbjct: 180 AALRLSRPGRPGKDARLPEERPGRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPAQGRRQ 239
Query: 584 RACRHL-------------------RRPCPEPRR------RAAAACP*APGAPPAPRPPG 480
R L RRP P+PRR R P P P PG
Sbjct: 240 RTPGQLLPGADLPPRLPRQGLSAEGRRP-PDPRRPRRPGQRRHGPGPALVAGPRHPAEPG 298
Query: 479 GGRR---GRRAAAGRRGRRSPR 423
R RRAAAG G+R R
Sbjct: 299 QRLRLRPARRAAAGTAGQRPAR 320
Score = 41.2 bits (95), Expect = 0.024
Identities = 57/170 (33%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Frame = +1
Query: 412 QLPGRGLRRP-RRPAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARP 588
+LP +GL RRP RPRRP G G A A R + G+R
Sbjct: 254 RLPRQGLSAEGRRPPDPRRPRRPGQRRHGPGPA------LVAGPRHPAEPGQR------- 300
Query: 589 LRLLRTAERPCRR-ATGTAGAAAAAVPAAAGRS-PAFPRRR*RRPVCQAPPLRPALRLRA 762
LRL RP RR A GTAG PA A RS A R + + QA P +L
Sbjct: 301 LRL-----RPARRAAAGTAGQR----PARADRSATAAGRTQPGAAIAQARTTEPRQQLAG 351
Query: 763 RRPGAG----AEQTARHRRP--APRSVPPAVPAPLPAAVPASVPTAAAVP 894
R A A+Q R R+P + RSV P P+ P A+ ++ P
Sbjct: 352 HRQPAAEPGLADQRRRARKPMNSSRSVNPR-PSFAPRALSLAIALLLGAP 400
Score = 41.2 bits (95), Expect = 0.024
Identities = 50/153 (32%), Positives = 57/153 (36%), Gaps = 6/153 (3%)
Frame = +1
Query: 448 PAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARPLRLLRTAERPCRR 627
P A R + P A G G A R G G RRR R ARP A+RP
Sbjct: 110 PDAGQRGKAEGPARTAARRLQGRPGARRAGRLGGRGARRRRTRPARP------ADRP--- 160
Query: 628 ATGTAGAAAAAVPAAAGRSPAFPRRR*RRPVCQAPPLRPALRL-RARRPGAGAE--QTAR 798
G AG A +P G+ P + ALRL R RPG A +
Sbjct: 161 --GAAGRDRAELPRGLGQ-----------------PGQAALRLSRPGRPGKDARLPEERP 201
Query: 799 HRRPAPRSVPPAVP---APLPAAVPASVPTAAA 888
RRPA R P P + AA PA A A
Sbjct: 202 GRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPA 234
Score = 35.4 bits (80), Expect = 1.3
Identities = 36/103 (34%), Positives = 40/103 (37%), Gaps = 4/103 (3%)
Frame = -1
Query: 713 RRQRRRGNAGDRPAAAGTAAAAAPAVPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRA 534
RRQRRR G PA G P A + A+ + +G RP R R
Sbjct: 7 RRQRRRAPRGRAPAQPGLRTGRGQC-PGAAHRALPAIPAVLAGNRPAAAHRPV--ARART 63
Query: 533 AAACP*APGAPPAP---RP-PGGGRRGRRAAAGRRGRRSPRPG 417
AA P A P P RP PG R G A A GR R G
Sbjct: 64 AAGRPGADHPLPHPGHLRPAPGRDRAGLPALAAAHGRVLVRTG 106
>ref|ZP_00136909.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 804
Score = 58.9 bits (141), Expect = 1e-07
Identities = 53/141 (37%), Positives = 63/141 (44%)
Frame = -1
Query: 839 GTAGGTERGAGRRWRAVCSAPAPGRRALSRRAGRSGGAWQTGRRQRRRGNAGDRPAAAGT 660
G A G R A RR + PG +RRAGR GG RR+ R DRP AAG
Sbjct: 59 GKAEGPARTAARRLQG-----RPG----ARRAGRLGGRGAR-RRRTRPARPADRPGAAGR 108
Query: 659 AAAAAPAVPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRAAAACP*APGAPPAPRPPG 480
A P + G++A+R SR GR + R P P RR A AP AP R G
Sbjct: 109 DRAELPRG--LGQPGQAALRLSRPGRPGKDARLPEERPGRRPATRRT-APRAPLLRRQVG 165
Query: 479 GGRRGRRAAAGRRGRRSPRPG 417
+ AA +GRR PG
Sbjct: 166 AAGPAQGRAAPAQGRRQRTPG 186
Score = 42.0 bits (97), Expect = 0.014
Identities = 63/202 (31%), Positives = 69/202 (33%), Gaps = 49/202 (24%)
Frame = -1
Query: 881 AVGTLAGTAAGNGAGTAGGTERGAGRR-WRAVCSAPAPG-----RRALSRRAGRSGGAWQ 720
A L G AG GG RGA RR R A PG R L R G+ G Q
Sbjct: 68 AARRLQGRPGARRAGRLGG--RGARRRRTRPARPADRPGAAGRDRAELPRGLGQPG---Q 122
Query: 719 TGRRQRRRGNAG-------DRPAAAGTAAAAAPAVPVARRQ--------GRSAVRSSRSG 585
R R G G +RP AP P+ RRQ GR+A R
Sbjct: 123 AALRLSRPGRPGKDARLPEERPGRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPAQGRRQ 182
Query: 584 RACRHL-------------------RRPCPEPRR------RAAAACP*APGAPPAPRPPG 480
R L RRP P+PRR R P P P PG
Sbjct: 183 RTPGQLLPGADLPPRLPRQGLSAEGRRP-PDPRRPRRPGQRRHGPGPALVAGPRHPAEPG 241
Query: 479 GGRR---GRRAAAGRRGRRSPR 423
R RRAAAG G+R R
Sbjct: 242 QRLRLRPARRAAAGTAGQRPAR 263
Score = 41.2 bits (95), Expect = 0.024
Identities = 50/153 (32%), Positives = 57/153 (36%), Gaps = 6/153 (3%)
Frame = +1
Query: 448 PAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARPLRLLRTAERPCRR 627
P A R + P A G G A R G G RRR R ARP A+RP
Sbjct: 53 PDAGQRGKAEGPARTAARRLQGRPGARRAGRLGGRGARRRRTRPARP------ADRP--- 103
Query: 628 ATGTAGAAAAAVPAAAGRSPAFPRRR*RRPVCQAPPLRPALRL-RARRPGAGAE--QTAR 798
G AG A +P G+ P + ALRL R RPG A +
Sbjct: 104 --GAAGRDRAELPRGLGQ-----------------PGQAALRLSRPGRPGKDARLPEERP 144
Query: 799 HRRPAPRSVPPAVP---APLPAAVPASVPTAAA 888
RRPA R P P + AA PA A A
Sbjct: 145 GRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPA 177
Score = 41.2 bits (95), Expect = 0.024
Identities = 57/170 (33%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Frame = +1
Query: 412 QLPGRGLRRP-RRPAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARP 588
+LP +GL RRP RPRRP G G A A R + G+R
Sbjct: 197 RLPRQGLSAEGRRPPDPRRPRRPGQRRHGPGPA------LVAGPRHPAEPGQR------- 243
Query: 589 LRLLRTAERPCRR-ATGTAGAAAAAVPAAAGRS-PAFPRRR*RRPVCQAPPLRPALRLRA 762
LRL RP RR A GTAG PA A RS A R + + QA P +L
Sbjct: 244 LRL-----RPARRAAAGTAGQR----PARADRSATAAGRTQPGAAIAQARTTEPRQQLAG 294
Query: 763 RRPGAG----AEQTARHRRP--APRSVPPAVPAPLPAAVPASVPTAAAVP 894
R A A+Q R R+P + RSV P P+ P A+ ++ P
Sbjct: 295 HRQPAAEPGLADQRRRARKPMNSSRSVNPR-PSFAPRALSLAIALLLGAP 343
>ref|ZP_00136911.1| COG2885: Outer membrane protein and related
peptidoglycan-associated (lipo)proteins [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 761
Score = 58.9 bits (141), Expect = 1e-07
Identities = 53/141 (37%), Positives = 63/141 (44%)
Frame = -1
Query: 839 GTAGGTERGAGRRWRAVCSAPAPGRRALSRRAGRSGGAWQTGRRQRRRGNAGDRPAAAGT 660
G A G R A RR + PG +RRAGR GG RR+ R DRP AAG
Sbjct: 16 GKAEGPARTAARRLQG-----RPG----ARRAGRLGGRGAR-RRRTRPARPADRPGAAGR 65
Query: 659 AAAAAPAVPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRAAAACP*APGAPPAPRPPG 480
A P + G++A+R SR GR + R P P RR A AP AP R G
Sbjct: 66 DRAELPRG--LGQPGQAALRLSRPGRPGKDARLPEERPGRRPATRRT-APRAPLLRRQVG 122
Query: 479 GGRRGRRAAAGRRGRRSPRPG 417
+ AA +GRR PG
Sbjct: 123 AAGPAQGRAAPAQGRRQRTPG 143
Score = 42.0 bits (97), Expect = 0.014
Identities = 63/202 (31%), Positives = 69/202 (33%), Gaps = 49/202 (24%)
Frame = -1
Query: 881 AVGTLAGTAAGNGAGTAGGTERGAGRR-WRAVCSAPAPG-----RRALSRRAGRSGGAWQ 720
A L G AG GG RGA RR R A PG R L R G+ G Q
Sbjct: 25 AARRLQGRPGARRAGRLGG--RGARRRRTRPARPADRPGAAGRDRAELPRGLGQPG---Q 79
Query: 719 TGRRQRRRGNAG-------DRPAAAGTAAAAAPAVPVARRQ--------GRSAVRSSRSG 585
R R G G +RP AP P+ RRQ GR+A R
Sbjct: 80 AALRLSRPGRPGKDARLPEERPGRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPAQGRRQ 139
Query: 584 RACRHL-------------------RRPCPEPRR------RAAAACP*APGAPPAPRPPG 480
R L RRP P+PRR R P P P PG
Sbjct: 140 RTPGQLLPGADLPPRLPRQGLSAEGRRP-PDPRRPRRPGQRRHGPGPALVAGPRHPAEPG 198
Query: 479 GGRR---GRRAAAGRRGRRSPR 423
R RRAAAG G+R R
Sbjct: 199 QRLRLRPARRAAAGTAGQRPAR 220
Score = 41.2 bits (95), Expect = 0.024
Identities = 50/153 (32%), Positives = 57/153 (36%), Gaps = 6/153 (3%)
Frame = +1
Query: 448 PAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARPLRLLRTAERPCRR 627
P A R + P A G G A R G G RRR R ARP A+RP
Sbjct: 10 PDAGQRGKAEGPARTAARRLQGRPGARRAGRLGGRGARRRRTRPARP------ADRP--- 60
Query: 628 ATGTAGAAAAAVPAAAGRSPAFPRRR*RRPVCQAPPLRPALRL-RARRPGAGAE--QTAR 798
G AG A +P G+ P + ALRL R RPG A +
Sbjct: 61 --GAAGRDRAELPRGLGQ-----------------PGQAALRLSRPGRPGKDARLPEERP 101
Query: 799 HRRPAPRSVPPAVP---APLPAAVPASVPTAAA 888
RRPA R P P + AA PA A A
Sbjct: 102 GRRPATRRTAPRAPLLRRQVGAAGPAQGRAAPA 134
Score = 41.2 bits (95), Expect = 0.024
Identities = 57/170 (33%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Frame = +1
Query: 412 QLPGRGLRRP-RRPAAALRPRRPPPGGRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARP 588
+LP +GL RRP RPRRP G G A A R + G+R
Sbjct: 154 RLPRQGLSAEGRRPPDPRRPRRPGQRRHGPGPA------LVAGPRHPAEPGQR------- 200
Query: 589 LRLLRTAERPCRR-ATGTAGAAAAAVPAAAGRS-PAFPRRR*RRPVCQAPPLRPALRLRA 762
LRL RP RR A GTAG PA A RS A R + + QA P +L
Sbjct: 201 LRL-----RPARRAAAGTAGQR----PARADRSATAAGRTQPGAAIAQARTTEPRQQLAG 251
Query: 763 RRPGAG----AEQTARHRRP--APRSVPPAVPAPLPAAVPASVPTAAAVP 894
R A A+Q R R+P + RSV P P+ P A+ ++ P
Sbjct: 252 HRQPAAEPGLADQRRRARKPMNSSRSVNPR-PSFAPRALSLAIALLLGAP 300
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 58.5 bits (140), Expect = 1e-07
Identities = 69/186 (37%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Frame = +1
Query: 361 AHV*QGRHSSARR-QSQTQLPGRGLRRPRRPAAA-LRPRRPPPGGRGAGGAPGAYGQAAA 534
AH+ + R RR + LPG RRPAA R RRP GRG G+ A
Sbjct: 54 AHLPRARRPRLRRPRGGAALPGPRRGGRRRPAARHRRDRRPAVAGRGP-------GRPAR 106
Query: 535 ARRRGSGHGRRRC---------RHARPLRLLRTA----------ERPCRRA---TGTAGA 648
RRRG RR C R ARP RL RT +RP RR G G
Sbjct: 107 LRRRGPRRRRRLCPRPRRTPRHRAARP-RLRRTGPRRQRPHPHRQRPGRRTPARPGHRGR 165
Query: 649 AAAAVPAAAGRSPAFPRRR*RRPVCQAP--PLRPALRLRARRPGAGAEQTARHRRPAPRS 822
AV AAA R R +RP P P A R R GAGA+ AR R A R
Sbjct: 166 GGPAVAAAARRG----RPGHQRPAAPHPHRPRPAAARARRTAGGAGAQLRARRRATAGRR 221
Query: 823 VPPAVP 840
PA P
Sbjct: 222 RRPARP 227
Score = 53.9 bits (128), Expect = 4e-06
Identities = 71/213 (33%), Positives = 79/213 (36%), Gaps = 50/213 (23%)
Frame = +1
Query: 379 RHSSARRQSQTQLPGRGLRRPRRPAAALRP-RRPP--PGGRGAGGAPGAYGQAAAARRRG 549
R + R ++ +L G RR R RP RR P PG RG GG AAAARR
Sbjct: 123 RRTPRHRAARPRLRRTGPRRQRPHPHRQRPGRRTPARPGHRGRGGP----AVAAAARRGR 178
Query: 550 SGH-------------------------------------GRRR--CRHARPLRLLRTAE 612
GH GRRR R RPLR LR
Sbjct: 179 PGHQRPAAPHPHRPRPAAARARRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTP 238
Query: 613 RPCRRATGTAGAAA--AAVPAAAGRSPAFPRRR*RRPVCQAPPLRPALRLRARRPGAGAE 786
RP R +G A + P AAGR P R RPV A R A A G E
Sbjct: 239 RPHARGSGQGRVAGRRSGAPGAAGRRQPLPGR--PRPVRGAQQHRAA--QGALPGGHRPE 294
Query: 787 QTARHRRPAPRSVPPA------VPAPLPAAVPA 867
R RPAPR +P + P P PA V A
Sbjct: 295 ADRRGVRPAPRRLPDSGTRPDRQPPPRPARVLA 327
Score = 52.8 bits (125), Expect = 8e-06
Identities = 59/183 (32%), Positives = 66/183 (35%), Gaps = 7/183 (3%)
Frame = -1
Query: 854 AGNGAGTAGGTERGAGRRWRAVCSAP--APGRRALSRRAGRSGGAWQTGRRQRRRGNAGD 681
AG G G R RR R +C P P RA R R+G Q R+R G
Sbjct: 97 AGRGPGRPARLRRRGPRRRRRLCPRPRRTPRHRAARPRLRRTGPRRQRPHPHRQR--PGR 154
Query: 680 R-PAAAGTAAAAAPAVPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRAAAACP*APGA 504
R PA G PAV A R+GR H R P P R P A
Sbjct: 155 RTPARPGHRGRGGPAVAAAARRGRPG-----------HQRPAAPHPHRP-------RPAA 196
Query: 503 PPAPRPPGGG----RRGRRAAAGRRGRRSPRPGS*VWLCRRALEWRPCQTCAQPPPPYQS 336
A R GG R RRA AGRR RR RP RP + + P P+
Sbjct: 197 ARARRTAGGAGAQLRARRRATAGRR-RRPARPR------------RPLRRLRRTPRPHAR 243
Query: 335 SPG 327
G
Sbjct: 244 GSG 246
Score = 50.1 bits (118), Expect = 5e-05
Identities = 60/171 (35%), Positives = 67/171 (39%), Gaps = 17/171 (9%)
Frame = +1
Query: 421 GRGLR-RPRRPAAALRPRRPPPG--GRGAGGAPGAYGQAAAARRRGSGHGRRRCRHARPL 591
G G++ RP RPA RRP G GRG G + A RR H R R R
Sbjct: 7 GAGVQGRPHRPARGPARRRPAGGAAGRGRPVVGGGVARLARPARRQPAH-LPRARRPRLR 65
Query: 592 RLLRTAERPCRRATGTAGAAAA----AVPAAAGRSPAFPRR------R*RRPVCQAP--- 732
R A P R G AA PA AGR P P R R RR +C P
Sbjct: 66 RPRGGAALPGPRRGGRRRPAARHRRDRRPAVAGRGPGRPARLRRRGPRRRRRLCPRPRRT 125
Query: 733 PLRPALRLRARRPGAGAEQTARHR-RPAPRSVPPAVPAPLPAAVPASVPTA 882
P A R R RR G ++ HR RP R+ PA P PA A
Sbjct: 126 PRHRAARPRLRRTGPRRQRPHPHRQRPGRRT--PARPGHRGRGGPAVAAAA 174
Score = 44.7 bits (104), Expect = 0.002
Identities = 52/133 (39%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Frame = +1
Query: 481 PGGRGAGGAPGAYGQAAAARR-RGSGHGRRR-------CRHARPLRL----LRTAERPCR 624
PGG G G P + A RR G GR R R ARP R L A RP
Sbjct: 5 PGGAGVQGRPHRPARGPARRRPAGGAAGRGRPVVGGGVARLARPARRQPAHLPRARRP-- 62
Query: 625 RATGTAGAAAAAVPAAAG-RSPAFPRRR*RRP-VCQAPPLRPALRLRARRPG------AG 780
R G AA P G R PA RR RRP V P RPA RLR R P
Sbjct: 63 RLRRPRGGAALPGPRRGGRRRPAARHRRDRRPAVAGRGPGRPA-RLRRRGPRRRRRLCPR 121
Query: 781 AEQTARHRRPAPR 819
+T RHR PR
Sbjct: 122 PRRTPRHRAARPR 134
Score = 43.9 bits (102), Expect = 0.004
Identities = 50/150 (33%), Positives = 52/150 (34%), Gaps = 2/150 (1%)
Frame = -1
Query: 863 GTAAGNGAGTAGGTERGAGRRWRAVCSAPAPGRRALSRRAGRSGGAWQTGRRQRRRGNAG 684
G+ G AG G AGRR P PGR R A Q+ R G
Sbjct: 244 GSGQGRVAGRRSGAPGAAGRR------QPLPGRPRPVRGA------------QQHRAAQG 285
Query: 683 DRPAAAGTAAAAAPAVPVARRQGRSAVRSSRSG--RACRHLRRPCPEPRRRAAAACP*AP 510
P A P RR S R R R R L RP P RRA P P
Sbjct: 286 ALPGGHRPEADRRGVRPAPRRLPDSGTRPDRQPPPRPARVLARPA-RPVRRAGHRRP--P 342
Query: 509 GAPPAPRPPGGGRRGRRAAAGRRGRRSPRP 420
G P R P G A G GRR PRP
Sbjct: 343 GRPGRGRLPTAGG-ALPAGVGGTGRRGPRP 371
Score = 43.5 bits (101), Expect = 0.005
Identities = 47/136 (34%), Positives = 50/136 (36%), Gaps = 2/136 (1%)
Frame = -1
Query: 818 RGAGRRWRAVCSAPAPGRRALSRRAGRSGGAWQTGRRQRRRGNAGDRPAAAGTAAAAAPA 639
R RR R PGRR R G G RRG G + AA PA
Sbjct: 137 RTGPRRQRPHPHRQRPGRRT-PARPGHRGRGGPAVAAAARRGRPGHQRPAAPHPHRPRPA 195
Query: 638 VPVARRQGRSAVRSSRSGRACRHLRRPCPEPRRRAAAACP*APGAPPAPRPPGGGR-RGR 462
ARR A R+ R RR P RR P P R G GR GR
Sbjct: 196 AARARRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTP--RPHARGSGQGRVAGR 253
Query: 461 RAAA-GRRGRRSPRPG 417
R+ A G GRR P PG
Sbjct: 254 RSGAPGAAGRRQPLPG 269
Score = 38.9 bits (89), Expect = 0.12
Identities = 56/176 (31%), Positives = 64/176 (35%), Gaps = 53/176 (30%)
Frame = +1
Query: 349 GGGCAHV*QGRHSSARRQSQTQLPGRGLRRPRR---------------------PAAALR 465
GG A + R ++A R+ + P R LRR RR P AA R
Sbjct: 204 GGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTPRPHARGSGQGRVAGRRSGAPGAAGR 263
Query: 466 PRRPPPGG----RGA-------GGAPGAYGQAAAAR------RRGSGHGRRRCRHA--RP 588
R+P PG RGA G PG + A R RR G R R RP
Sbjct: 264 -RQPLPGRPRPVRGAQQHRAAQGALPGGHRPEADRRGVRPAPRRLPDSGTRPDRQPPPRP 322
Query: 589 LRLLRTAERPCRRA-------------TGTAGAAAAAVPAAAGRSPAFPRRR*RRP 717
R+L RP RRA TAG A A GR PRRR RP
Sbjct: 323 ARVLARPARPVRRAGHRRPPGRPGRGRLPTAGGALPAGVGGTGRRGPRPRRRRPRP 378
Score = 35.4 bits (80), Expect = 1.3
Identities = 42/111 (37%), Positives = 44/111 (38%), Gaps = 2/111 (1%)
Frame = -1
Query: 746 AGRSGGAWQTGRRQR-RRGNAGDRPAAAGTAAAAAPAVPVARRQGRSAVRSSRSGRACRH 570
A GGA GR R RG A RPA G A P V G R +R R
Sbjct: 2 AAAPGGAGVQGRPHRPARGPARRRPAG-GAAGRGRPVV------GGGVARLARPAR---- 50
Query: 569 LRRPCPEPR-RRAAAACP*APGAPPAPRPPGGGRRGRRAAAGRRGRRSPRP 420
R+P PR RR P A P PR R GRR A R RR RP
Sbjct: 51 -RQPAHLPRARRPRLRRPRGGAALPGPR-----RGGRRRPAARH-RRDRRP 94
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
LCL013f02_r |
AV626682 |
1 |
427 |
| 2 |
LCL076c02_r |
AV630259 |
5 |
349 |
| 3 |
LCL080a08_r |
AV630516 |
5 |
348 |
| 4 |
LCL001h04_r |
AV626064 |
6 |
323 |
| 5 |
LCL049b12_r |
AV628934 |
7 |
306 |
| 6 |
CL46b03_r |
AV395640 |
13 |
515 |
| 7 |
CL19g11_r |
AV394196 |
14 |
421 |
| 8 |
MXL016e12_r |
BP093985 |
19 |
448 |
| 9 |
CL41c10_r |
AV395412 |
26 |
368 |
| 10 |
CL41d06_r |
AV395441 |
32 |
279 |
| 11 |
LCL100h07_r |
AV631858 |
254 |
736 |
| 12 |
CL72e02_r |
AV397032 |
309 |
463 |
| 13 |
LCL025h12_r |
AV627383 |
368 |
528 |
| 14 |
LCL001h03_r |
AV626063 |
383 |
614 |
| 15 |
HCL090e09_r |
AV644560 |
387 |
584 |
| 16 |
HCL045g10_r |
AV642111 |
389 |
896 |
| 17 |
LCL076e10_r |
AV630277 |
423 |
782 |
| 18 |
HCL032h08_r |
AV641400 |
434 |
782 |
| 19 |
LCL032f06_r |
AV627829 |
448 |
668 |
| 20 |
HCL031g01_r |
AV641328 |
543 |
896 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute