KCC000325A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000325A_C01 KCC000325A_c01
GACAGGACTAGCCTGACTCGCGTCAACAGTGCGTGCACAATAGTTATAGTTCCTCGCTAA
CGAGCGGGCTGGCGCAACACAACACCATCAAAACAAAATCATTGCTTTCAATTCCTTATT
TGGTGTTATCAGTTGGTTTTAGGGCAACCCGTTGATTGTCGGTGGTTTCGTTTGTATGGC
GCCGGCTCGCCGAGCCGTTGCGCAGGGGCTGCGCCAGTTTGTGCGGAATGTTGTTGAAGA
GGCTGCACACGTCGGCAGTGGCCCGTCGACCTCTTACAACAGTCAGCTCGTGGCACATGG
AATGCGCTACGCTCGGGAGCTGCGCGGCTGCACAGGCATAACAGCAACGTTGATAGGCCG
AAGGGCTTACAGCTCGCGTGCTCTGCGTCGGGAAACCGAATCATTCATGCGACAGTGGCG
CGGGTTTAAGACAGTTGCGATCGGCACGGGCGTCGGAACGGTGCAAAGCTCGCAGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000325A_C01 KCC000325A_c01
         (477 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC14525.1| hypothetical protein L8329.09 [Leishmania major]       35  0.58
ref|ZP_00022719.1| COG2205: Osmosensitive K+ channel histidine k...    33  1.3
gb|AAM34318.2| similar to Homo sapiens (Human). Piwi-like 1 (Dro...    33  2.2
ref|NP_244188.1| cell wall-binding protein [Bacillus halodurans]...    32  3.8
gb|AAQ89285.1| chordin [Homo sapiens]                                  32  4.9

>emb|CAC14525.1| hypothetical protein L8329.09 [Leishmania major]
          Length = 639

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -3

Query: 385 QSTRAVSPSAYQRCCYACAAAQLPSVA-----HSMC-HELTVVRGRRATADVCSLF 236
           Q+   V+PSA   C    A  +LPS A     H +C H LT+ + RR T D+  L+
Sbjct: 265 QAAEDVAPSALSVCAALRAVTRLPSAASVTAPHVLCRHVLTLSQSRRLTPDIALLY 320

>ref|ZP_00022719.1| COG2205: Osmosensitive K+ channel histidine kinase [Ralstonia
           metallidurans]
          Length = 712

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 23/75 (30%), Positives = 39/75 (51%), Gaps = 4/75 (5%)
 Frame = +3

Query: 108 SIPYLVLSVGFRATR*LSVVSFVWRRLAEP-LRRGC---ASLCGMLLKRLHTSAVARRPL 275
           ++ YL L    +    L+V    WR LA+P LRR     A+L  + ++R+H   VA+R L
Sbjct: 407 TVLYLPLKAPMQTRGVLAVEPRAWRALADPALRRQADVFATLIAIAIERIHYVDVAQRAL 466

Query: 276 TTVSSWHMECATLGS 320
            ++ S  +  + L +
Sbjct: 467 VSIESERLRSSLLAA 481

>gb|AAM34318.2| similar to Homo sapiens (Human). Piwi-like 1 (Drosophila)
           [Dictyostelium discoideum]
          Length = 979

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (55%)
 Frame = +2

Query: 347 TLIGRRAYSSRALRRETESFMRQWRGFKTVAIGTGVGTV 463
           +L+GR  Y+S   R   + F+  W+GF T  I T  GT+
Sbjct: 368 SLMGRNYYTSVGKRDVPKHFLEVWKGFSTSVIPTEAGTM 406

>ref|NP_244188.1| cell wall-binding protein [Bacillus halodurans]
           gi|25486780|pir||B84065 cell wall-binding protein BH3322
           [imported] - Bacillus halodurans (strain C-125)
           gi|10175945|dbj|BAB07041.1| cell wall-binding protein
           [Bacillus halodurans]
          Length = 311

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +2

Query: 233 VEEAAHVGSGPSTSYNSQLVAHGMRYARELRGCTGITAT 349
           VE+ AH     STS ++ +      Y  +  GC+G+TAT
Sbjct: 201 VEQVAHEEEAASTSGDTVIEMEATAYTADCEGCSGVTAT 239

>gb|AAQ89285.1| chordin [Homo sapiens]
          Length = 954

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 11/59 (18%)
 Frame = -2

Query: 395  FPDAE--HASCKPFGLSTLLLCLCSRAAP--ERSAFHVP-------RADCCKRSTGHCR 252
            FP+++  H S  PFG  + + C C    P  ER    +P        + CC R T H R
Sbjct: 879  FPESQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSLPLSCGSGKESRCCSRCTAHRR 937



EST assemble image


clone accession position
1 CL19e06_r AV394160 1 477
2 MXL004h08_r BP093200 1 203




Chlamydomonas reinhardtii
Kazusa DNA Research Institute