KCC000321A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000321A_C02 KCC000321A_c02
CTGCCATTCATCGTTAGGCCTTGACTCGCCGCGGCGCTCTAGGCGTGCGTAACGAACCCG
ACTGAAAGCCTACGAGCCCACAATGACGCGCCCGTGAGCACTCTTTAAACATTATAGATA
GTATGGTTGGCTAGAGAGCTGCCGGGGCCAGCAGCAGGCCTTTTCCCCAGCCGCACCCAT
TCGCGGAGAACCCAGAGAGGAGAGGGCTCTTGGCCAGGTCTCTTGGCCAGGCGTGCCCGG
CGGTCCGGCCTCGCGGAGCAGCAGCGGGCGAGGAGGGCGAGCGGGGCTAGTCGCCGGAGC
AGCATGGCGCCCTGAGGCGCTCACCGGCCTCTGCGGTGTTTAGGACACAGCCTCGTGGGC
GGGCTTCTGCCCATCTATAGAGTCAAGAGCGGCATCATGGGGGACCAGGTCCTGGACCTG
GCAGTGCAAGCGCAAGTCTTTGAGATTTGCGCAGCGCCCATCTGGATATATGACAGCACA
TTTAGCGTCAACGTATGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000321A_C02 KCC000321A_c02
         (500 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_301558.1| similar to Protein kinase PKX1 [Homo sapiens]         42  0.006
ref|NP_338547.1| hypothetical protein [Mycobacterium tuberculosi...    39  0.027
ref|NP_857546.1| HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN [...    39  0.027
ref|NP_218396.1| hypothetical protein Rv3879c [Mycobacterium tub...    39  0.027
ref|NP_856329.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium b...    39  0.036

>ref|XP_301558.1| similar to Protein kinase PKX1 [Homo sapiens]
          Length = 1593

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 34/126 (26%), Positives = 51/126 (39%), Gaps = 13/126 (10%)
 Frame = -3

Query: 351 AVS*TPQRPVSASGRHAAPATSPARPPRPLLLREAGPPGTPGQETWPRALSSLGSPRMGA 172
           A+S  P R +   G H  P   P  P RP  LR  G PG P    WP      G+P +  
Sbjct: 55  ALSAAPGRALGGEGTHGEPPLMPP-PRRPPRLRP-GKPGYPSAPAWP------GAPDLSV 106

Query: 171 AGEKACCWPRQ-------------LSSQPYYL*CLKSAHGRVIVGS*AFSRVRYARLERR 31
           +  ++  WPR+                 P +   L+       VG+  F R ++  +ER+
Sbjct: 107 SAWRSPDWPRRPWRRATPESPKAWSPEPPAHR--LQDFDTLATVGTGTFGREQHVHIERK 164

Query: 30  GESRPN 13
             +RP+
Sbjct: 165 SSARPS 170

>ref|NP_338547.1| hypothetical protein [Mycobacterium tuberculosis CDC1551]
           gi|13883885|gb|AAK48361.1| hypothetical protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 723

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 363 PAHEAVS*TPQRPVSASGRHAAPATSPARPPRPLLLREAGP-----PGTPGQETWPRALS 199
           PA  A   TP  P  A     APA +P+  P+P+     GP     PGTPG E  P    
Sbjct: 265 PATPATPATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPGTPGGEPAPHVKP 324

Query: 198 SLGSPRMGAAGEKA 157
           +  + + G  G+ A
Sbjct: 325 AALAEQPGVPGQHA 338

>ref|NP_857546.1| HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN [Mycobacterium bovis
           subsp. bovis AF2122/97] gi|31620651|emb|CAD96095.1|
           HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 744

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 363 PAHEAVS*TPQRPVSASGRHAAPATSPARPPRPLLLREAGP-----PGTPGQETWPRALS 199
           PA  A   TP  P  A     APA +P+  P+P+     GP     PGTPG E  P    
Sbjct: 286 PATPATPATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPGTPGGEPAPHVKP 345

Query: 198 SLGSPRMGAAGEKA 157
           +  + + G  G+ A
Sbjct: 346 AALAEQPGVPGQHA 359

>ref|NP_218396.1| hypothetical protein Rv3879c [Mycobacterium tuberculosis H37Rv]
           gi|7477813|pir||E70803 hypothetical protein Rv3879c -
           Mycobacterium tuberculosis  (strain H37RV)
           gi|2960231|emb|CAA17971.1| hypothetical protein Rv3879c
           [Mycobacterium tuberculosis H37Rv]
          Length = 729

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 363 PAHEAVS*TPQRPVSASGRHAAPATSPARPPRPLLLREAGP-----PGTPGQETWPRALS 199
           PA  A   TP  P  A     APA +P+  P+P+     GP     PGTPG E  P    
Sbjct: 271 PATPATPATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPGTPGGEPAPHVKP 330

Query: 198 SLGSPRMGAAGEKA 157
           +  + + G  G+ A
Sbjct: 331 AALAEQPGVPGQHA 344

>ref|NP_856329.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97] gi|31619430|emb|CAD94868.1| CONSERVED
           HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97]
          Length = 163

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 23/63 (36%), Positives = 26/63 (40%)
 Frame = -3

Query: 330 RPVSASGRHAAPATSPARPPRPLLLREAGPPGTPGQETWPRALSSLGSPRMGAAGEKACC 151
           R +   GR A P + PARPPRP   R +G P         R     G  R G  G   CC
Sbjct: 98  RHIRGGGRPAGPQSGPARPPRPYGRRSSGAP--------VRMTHQRGLSRPGQEGANWCC 149

Query: 150 WPR 142
             R
Sbjct: 150 CQR 152



EST assemble image


clone accession position
1 CL19d05_r AV394171 1 590
2 LCL055g12_r AV629281 64 586
3 MXL029h06_r BP094799 65 404
4 MXL045d08_r BP095662 67 464
5 HCL032g08_r AV641392 76 449
6 LC052a05_r AV622618 80 579
7 HCL024g06_r AV640923 91 479
8 HCL051e02_r AV642418 91 465
9 MXL003e09_r BP093113 98 404




Chlamydomonas reinhardtii
Kazusa DNA Research Institute