Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000319A_C01 KCC000319A_c01
(590 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 45 0.001
ref|ZP_00091222.1| COG0414: Panthothenate synthetase [Azotobacte... 41 0.011
ref|ZP_00007413.1| COG0337: 3-dehydroquinate synthetase [Rhodoba... 41 0.014
ref|NP_741698.1| putative protein (80.3 kD) (5T676) [Caenorhabdi... 40 0.019
emb|CAD40065.1| OSJNBa0085C10.17 [Oryza sativa (japonica cultiva... 40 0.032
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 44.7 bits (104), Expect = 0.001
Identities = 52/188 (27%), Positives = 79/188 (41%), Gaps = 16/188 (8%)
Frame = +2
Query: 53 RSQTLTQRRRASCPSL--LA*TVGAERRLEIRRIPQQECSGQMLTRNSRRFLSSRRRRWP 226
R++T ++R R+ P L + RR + R +++ SG + + RR S R R
Sbjct: 1752 RTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVT 1811
Query: 227 GLRPGPTGHYQGG*LRELTQRAWTTRRRKKS--------------SPPCWSLASTRLFAS 364
R G +G++ R+ + R + RRR +S SP W + +R +
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPA 1871
Query: 365 KRR*TSTPRSTRGGRGTGCGRTSRTHRKS*ARRTSRATLKSRSRRSISCTCPSSTATLPP 544
R S R+ R RTS R+ RTS +SRSR S S + T P
Sbjct: 1872 THR-RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Query: 545 TRP*TVSR 568
TR + SR
Sbjct: 1931 TRRRSRSR 1938
>ref|ZP_00091222.1| COG0414: Panthothenate synthetase [Azotobacter vinelandii]
Length = 430
Score = 41.2 bits (95), Expect = 0.011
Identities = 35/99 (35%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 288 EPGRRGDGKNPHHHAGAWHQHVCLPPSGGEHQHPGARVAGGARAAAVHQGRTENPEQGAR 467
EP RR G P AGA C P G G A G RA G T++P G R
Sbjct: 26 EPVRRLQGAGPRRRAGAPVACRCRSPGAGR----GGHAAAGMRAQPA--GGTDHP-CGGR 78
Query: 468 AGQP*NHAAEDRFPAPAHHRRQR-YHRLGHEPSRGGLHG 581
AG R+P P H R R H R LHG
Sbjct: 79 AGHRHRRRRRHRWPGPGHARHARAVPDRAHAEVRERLHG 117
>ref|ZP_00007413.1| COG0337: 3-dehydroquinate synthetase [Rhodobacter sphaeroides]
Length = 617
Score = 40.8 bits (94), Expect = 0.014
Identities = 49/161 (30%), Positives = 58/161 (35%), Gaps = 23/161 (14%)
Frame = +3
Query: 156 RNAPVRCLPATPAAS*APGEGDGRAYALVQ-----LGITREGNCGSLPSEPGRRGDGKNP 320
R+APV C PA A S + R Y Q G EG GS P+ R G P
Sbjct: 10 RSAPVLCCPAGRARSGGHRDRARRIYMAFQPTSRHSGNKVEGRGGSAPA----REQGGWP 65
Query: 321 HHHAGAWHQHVCLPPSGGEHQHPGARVAGGARAAAVHQGRTEN------------PEQGA 464
A GG G R G+ A GR + P + A
Sbjct: 66 ASDGAAEENRCDGGHDGGGKDGRGQRAGPGSERALSRFGRGDRAGRQPDHRRNLRPRRRA 125
Query: 465 ---RAGQP*NHAAEDRFPAPAHHRRQRYHRLG---HEPSRG 569
R G+P AA R P A HRR+R H G H+P G
Sbjct: 126 LLPREGEPGPRAAPARQPLRALHRRRRLHGRGQPPHDPRAG 166
>ref|NP_741698.1| putative protein (80.3 kD) (5T676) [Caenorhabditis elegans]
gi|11359776|pir||T45059 hypothetical protein Y39B6B.gg
[imported] - Caenorhabditis elegans
gi|15209353|emb|CAC51077.1| Hypothetical protein
Y39B6A.1 [Caenorhabditis elegans]
Length = 735
Score = 40.4 bits (93), Expect = 0.019
Identities = 37/118 (31%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Frame = +3
Query: 255 TREGNCGS--LPSEPGRRGDGKNPHHHAGAWHQHVCLPPSGGEHQHPGARVAGGARAAAV 428
T G+ GS P+ G G+ HHHA A H H S G H H G A
Sbjct: 547 THHGHHGSHHSPAHHGHHGE----HHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPA 601
Query: 429 HQGR-----TENPEQGARAGQP*NHAAEDRFPAPAHHRRQRYHRLGHEPSRGGLHGAH 587
H G + GA G H AP HH +H H S G HG H
Sbjct: 602 HHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAP-HHEHHEHHGDHHHGSHGVHHGHH 658
Score = 40.4 bits (93), Expect = 0.019
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Frame = +3
Query: 306 DGKNPHHHAGAWHQHVCLPPSGG-EHQHPGARVAGGARAAAVHQGRTENPEQGARAGQP* 482
DG + H G H+H G H+H G H G +P G
Sbjct: 378 DGAHHEHKEGEHHEHAAHHDEHGVHHRHHGE-----------HHGTHHSPAHHGEHGTHH 426
Query: 483 NHAAEDRFPAPAHHRRQRYHRLG-HEPSRGGLHGAH 587
H E APAHH H G H P+ G HG H
Sbjct: 427 GHHGEHHH-APAHHGHHESHGHGHHSPAHHGHHGEH 461
Score = 40.4 bits (93), Expect = 0.019
Identities = 35/110 (31%), Positives = 41/110 (36%), Gaps = 2/110 (1%)
Frame = +3
Query: 264 GNCGSLPSEPGRRGDGKNPHH-HAGAWHQHVCLPPSGGEHQHPGARVAGGARAAAVHQGR 440
G+ G G G G HH H GA H H P H+H G G H G
Sbjct: 604 GHHGEHGVHHGHHGAGYGAHHGHHGAHHHHA---PHHEHHEHHGDHHHGSHGVHHGHHGT 660
Query: 441 TEN-PEQGARAGQP*NHAAEDRFPAPAHHRRQRYHRLGHEPSRGGLHGAH 587
+ G G +H A +PAHH +H HE G HGAH
Sbjct: 661 HHSLAHHGHHGGHGTHHGAHH---SPAHHG---HHGAHHE--HGAHHGAH 702
Score = 37.4 bits (85), Expect = 0.16
Identities = 33/120 (27%), Positives = 41/120 (33%), Gaps = 18/120 (15%)
Frame = +3
Query: 282 PSEPGRRGDGKNPHHHAGAWH----QHVCLPPSGGEHQHPGARVA--GGARAAAVHQGRT 443
P+ G G+ HHHA A H +H P G H G G + A H
Sbjct: 452 PAHHGHHGE----HHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHG 507
Query: 444 ENPEQGARAGQP*NHAAE-----DRFPAPAHH-------RRQRYHRLGHEPSRGGLHGAH 587
E+ A G H + APAHH +H H P+ G HG H
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 567
Score = 36.2 bits (82), Expect = 0.35
Identities = 34/112 (30%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Frame = +3
Query: 288 EPGRRGDGKNPHHHAGAWHQHVCLPPSG----------GEHQHPGARVA--GGARAAAVH 431
E G HHHA A H H G GEH H A G A H
Sbjct: 421 EHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480
Query: 432 QGRTENPEQGARAGQP*NHAAEDRFPAPAHHRRQRYHRLGHEPSRGGLHGAH 587
G + E G G +H +PAHH H H P+ G HG H
Sbjct: 481 HG--HHGEHGTHHGHHGSH------HSPAHHGHHGEHH--HAPAHHGHHGEH 522
>emb|CAD40065.1| OSJNBa0085C10.17 [Oryza sativa (japonica cultivar-group)]
Length = 521
Score = 39.7 bits (91), Expect = 0.032
Identities = 33/107 (30%), Positives = 45/107 (41%), Gaps = 1/107 (0%)
Frame = +3
Query: 225 RAYALVQLGITREGNCGSLPSEPGRRGDGKNPHHHAGAWHQHVCLPPSGGEHQHPGARVA 404
+A+A V G R + G G +PH +GA PP G R A
Sbjct: 47 KAFADVSKGNQRRQAGPARQRHKGAAHGGPSPHVASGA------RPPGGRPRSAKADRTA 100
Query: 405 GGARAAAVHQGRTEN-PEQGARAGQP*NHAAEDRFPAPAHHRRQRYH 542
G +RAA + QG ++ P Q G A R P+ HHR++R H
Sbjct: 101 GDSRAARLGQGTAQSRPSQTTARG---GAARGRRQPSARHHRQRRGH 144
