Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000317A_C07 KCC000317A_c07
(678 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA78597.1| 60S ribosomal protein L2 [Chlamydomonas sp. HS-5] 211 2e-87
ref|NP_190687.1| 60S ribosomal protein L8 (RPL8B) [Arabidopsis t... 201 6e-81
emb|CAC20221.1| ribosomal protein L2 [Glycine max] 197 4e-79
emb|CAC93850.1| ribosomal protein L8 [Paracentrotus lividus] 200 4e-79
sp|P41116|RL8_XENLA 60S RIBOSOMAL PROTEIN L8 gi|630969|pir||S427... 198 6e-78
>dbj|BAA78597.1| 60S ribosomal protein L2 [Chlamydomonas sp. HS-5]
Length = 257
Score = 211 bits (537), Expect(2) = 2e-87
Identities = 97/146 (66%), Positives = 120/146 (81%)
Frame = +2
Query: 59 RGGIFKSHNTHRNGVPPSTAVMDSAERNHYIKGVVAEVIHDPGRGAPLARVTFRDPIRYK 238
RG IF S+NTHR G +MD++ERN YIKGVV+++IHD GRGAPLA+VTFR+P YK
Sbjct: 12 RGSIFTSNNTHRKGAAKHR-LMDNSERNAYIKGVVSDIIHDSGRGAPLAKVTFRNPYHYK 70
Query: 239 HQKELFIAAEGIYSGQFIYCGRKAALSIGNVKPLGDMPEGTIVCNVEEKAGDRGALARCS 418
KELFIAAEG+Y+GQF+YCG+KA L +GNVKP+G MPEGT+VC +EEKAGDRGA+AR S
Sbjct: 71 QDKELFIAAEGVYTGQFLYCGKKATLHVGNVKPIGTMPEGTVVCCLEEKAGDRGAIARAS 130
Query: 419 GDYAIVVAHNPDTGITRIKLPLGRQE 496
GDY I+VAHN D +TR+KLP G ++
Sbjct: 131 GDYCIIVAHNTDANVTRVKLPSGAKK 156
Score = 134 bits (336), Expect(2) = 2e-87
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 480 PSGAKKVVSSACRATVGQVAGGGRTEKPMLKAGRSYWKYKAKRNSWPKVRGVAMNPVEHP 659
PSGAKK++ S CRATVGQVAGGGRTEKPMLKAGRSY KYKAKRNSWPKVRGVAMNPVEHP
Sbjct: 151 PSGAKKILPSTCRATVGQVAGGGRTEKPMLKAGRSYHKYKAKRNSWPKVRGVAMNPVEHP 210
Query: 660 HGGGNH 677
HGGGNH
Sbjct: 211 HGGGNH 216
>ref|NP_190687.1| 60S ribosomal protein L8 (RPL8B) [Arabidopsis thaliana]
gi|11276681|pir||T45750 ribosomal protein L8 homolog -
Arabidopsis thaliana gi|6562271|emb|CAB62641.1|
ribosomal protein L8 homolog [Arabidopsis thaliana]
Length = 260
Score = 201 bits (512), Expect(2) = 6e-81
Identities = 92/145 (63%), Positives = 113/145 (77%)
Frame = +2
Query: 62 GGIFKSHNTHRNGVPPSTAVMDSAERNHYIKGVVAEVIHDPGRGAPLARVTFRDPIRYKH 241
G +FKSH HR G P +D ERN Y+KG+V E+IHDPGRGAPLARV FR P RY
Sbjct: 14 GSVFKSHTHHRKG-PAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMK 72
Query: 242 QKELFIAAEGIYSGQFIYCGRKAALSIGNVKPLGDMPEGTIVCNVEEKAGDRGALARCSG 421
QKELF+AAEG+Y+GQ++YCG+KA L +GNV PLG +PEG ++CNVE GDRGALAR SG
Sbjct: 73 QKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASG 132
Query: 422 DYAIVVAHNPDTGITRIKLPLGRQE 496
DYAIV+AHNP++ TR+KLP G ++
Sbjct: 133 DYAIVIAHNPESNTTRVKLPSGSKK 157
Score = 122 bits (305), Expect(2) = 6e-81
Identities = 54/66 (81%), Positives = 59/66 (88%)
Frame = +3
Query: 480 PSGAKKVVSSACRATVGQVAGGGRTEKPMLKAGRSYWKYKAKRNSWPKVRGVAMNPVEHP 659
PSG+KK++ SACRA +GQVAGGGRTEKP LKAG +Y KYKAKRN WP VRGVAMNPVEHP
Sbjct: 152 PSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHP 211
Query: 660 HGGGNH 677
HGGGNH
Sbjct: 212 HGGGNH 217
>emb|CAC20221.1| ribosomal protein L2 [Glycine max]
Length = 260
Score = 197 bits (501), Expect(2) = 4e-79
Identities = 92/145 (63%), Positives = 109/145 (74%)
Frame = +2
Query: 62 GGIFKSHNTHRNGVPPSTAVMDSAERNHYIKGVVAEVIHDPGRGAPLARVTFRDPIRYKH 241
G +FKSH HR G P +D ERN Y+KGVV +VIHDPGRGAPLA+V FR P RYK
Sbjct: 13 GSVFKSHTHHRKG-PARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVAFRHPFRYKK 71
Query: 242 QKELFIAAEGIYSGQFIYCGRKAALSIGNVKPLGDMPEGTIVCNVEEKAGDRGALARCSG 421
Q ELFIAAEG+Y+GQFIYCG+KA L +GNV PL +PEG ++CNVE GDRG AR SG
Sbjct: 72 QNELFIAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASG 131
Query: 422 DYAIVVAHNPDTGITRIKLPLGRQE 496
DYAIV++HNPD +RIKLP G ++
Sbjct: 132 DYAIVISHNPDNDTSRIKLPSGSKK 156
Score = 120 bits (300), Expect(2) = 4e-79
Identities = 52/66 (78%), Positives = 59/66 (88%)
Frame = +3
Query: 480 PSGAKKVVSSACRATVGQVAGGGRTEKPMLKAGRSYWKYKAKRNSWPKVRGVAMNPVEHP 659
PSG+KK+V S CRA +GQVAGGGRTEKP+LKAG +Y K++ KRN WPKVRGVAMNPVEHP
Sbjct: 151 PSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 210
Query: 660 HGGGNH 677
HGGGNH
Sbjct: 211 HGGGNH 216
>emb|CAC93850.1| ribosomal protein L8 [Paracentrotus lividus]
Length = 257
Score = 200 bits (508), Expect(2) = 4e-79
Identities = 91/145 (62%), Positives = 117/145 (79%)
Frame = +2
Query: 62 GGIFKSHNTHRNGVPPSTAVMDSAERNHYIKGVVAEVIHDPGRGAPLARVTFRDPIRYKH 241
G +F+SHN HR G P ++ D AER+ Y+KG+V E+IHDPGRGAPLA++TFRDP RYK
Sbjct: 13 GSVFRSHNKHRKGAPRLRSI-DYAERHGYLKGIVKEIIHDPGRGAPLAKITFRDPYRYKK 71
Query: 242 QKELFIAAEGIYSGQFIYCGRKAALSIGNVKPLGDMPEGTIVCNVEEKAGDRGALARCSG 421
+ EL IA EGIY+GQFIYCG++A L+IGNV P+G MPEGT++C+VEEK +G LARCSG
Sbjct: 72 RNELMIAPEGIYTGQFIYCGKRATLNIGNVLPIGSMPEGTVICSVEEKGWRQGQLARCSG 131
Query: 422 DYAIVVAHNPDTGITRIKLPLGRQE 496
+YA VV+HNP+T +RIKLP G ++
Sbjct: 132 NYATVVSHNPETKKSRIKLPSGSKK 156
Score = 117 bits (293), Expect(2) = 4e-79
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +3
Query: 480 PSGAKKVVSSACRATVGQVAGGGRTEKPMLKAGRSYWKYKAKRNSWPKVRGVAMNPVEHP 659
PSG+KKVV SA RA VG VAGGGR +KP+LKAGR+Y+KYK KRNSWP+VRGVAMNPV+HP
Sbjct: 151 PSGSKKVVPSANRAMVGVVAGGGRIDKPILKAGRAYFKYKVKRNSWPRVRGVAMNPVDHP 210
Query: 660 HGGGNH 677
HGGGNH
Sbjct: 211 HGGGNH 216
>sp|P41116|RL8_XENLA 60S RIBOSOMAL PROTEIN L8 gi|630969|pir||S42725 ribosomal protein
L8, cytosolic - African clawed frog
gi|392925|gb|AAA18911.1| ribosomal protein L8
gi|27694782|gb|AAH43823.1| Unknown (protein for
MGC:53203) [Xenopus laevis]
Length = 257
Score = 198 bits (504), Expect(2) = 6e-78
Identities = 93/145 (64%), Positives = 116/145 (79%)
Frame = +2
Query: 62 GGIFKSHNTHRNGVPPSTAVMDSAERNHYIKGVVAEVIHDPGRGAPLARVTFRDPIRYKH 241
G +FK+H HR G A+ D AERN YIKG+V ++IHDPGRGAPLA+V FRDP R+K
Sbjct: 13 GSVFKAHVKHRKGAAKLRAI-DFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKK 71
Query: 242 QKELFIAAEGIYSGQFIYCGRKAALSIGNVKPLGDMPEGTIVCNVEEKAGDRGALARCSG 421
+ ELF+AAEGI++GQF+YCG+KA L+IGNV P+G MPEGTIVC VEEK GDRG LAR SG
Sbjct: 72 RTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASG 131
Query: 422 DYAIVVAHNPDTGITRIKLPLGRQE 496
+YA V++HNP+T TR+KLP G ++
Sbjct: 132 NYATVISHNPETKKTRVKLPSGSKK 156
Score = 115 bits (287), Expect(2) = 6e-78
Identities = 53/66 (80%), Positives = 59/66 (89%)
Frame = +3
Query: 480 PSGAKKVVSSACRATVGQVAGGGRTEKPMLKAGRSYWKYKAKRNSWPKVRGVAMNPVEHP 659
PSG+KKV+SSA RA VG VAGGGR +KP+LKAGR+Y KYKAKRN WP+VRGVAMNPVEHP
Sbjct: 151 PSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210
Query: 660 HGGGNH 677
GGGNH
Sbjct: 211 FGGGNH 216
