KCC000308A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000308A_C01 KCC000308A_c01
agacgcgctacctgtGGTTGTCAGGCGGCTACCCGCCGCAGGGCCCCGCATCCGCGTCCG
GCGCCGCCTCCTCCGTTAACGGCGGCGCCAGCACCAGCGGCCACCACCACGCCTCGTCCT
CGCCCTCCTCATCACACCACCCGCACGCGTCGCCCTACAGCACGGGCATCCCCGCGCAGC
TGCAAGATGGAGGCGGAGAAGGTGCTGGCGGCTCTGGGTGGGCACAAGCTGCGGCGTGGC
GCGCATCAGTCCAACCCGTTCGATGGGCCGCCCGACACCATCGACTGGGCCAGCCATGCG
CTGAGCGCCTTCCACCACATGCTGGGCCGCGGGCATCGGCCCTCGCTAGAGCTGCTGGAC
GTCTTGCTGAACTGCATGCGCGCCAAGATGCTGCCGCCCGACGACTCCACCGTCCCGGGC
GTGCCGGGCGTCTCGGGCGCCATGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000308A_C01 KCC000308A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_828477.1| putative proline-rich protein [Streptomyces ave...    59  2e-08
emb|CAE05503.1| OSJNBa0022H21.23 [Oryza sativa (japonica cultiva...    36  1e-05
ref|XP_316705.1| ENSANGP00000020897 [Anopheles gambiae] gi|21299...    48  3e-05
gb|AAK13108.1|AC078839_24 Red chlorophyll catabolite reductase [...    47  5e-05
gb|AAK52126.1|AC079936_22 Putative red chlorophyll catabolite re...    47  5e-05

>ref|NP_828477.1| putative proline-rich protein [Streptomyces avermitilis MA-4680]
           gi|29610968|dbj|BAC75012.1| putative proline-rich
           protein [Streptomyces avermitilis MA-4680]
          Length = 206

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 31/76 (40%), Positives = 36/76 (46%)
 Frame = +1

Query: 46  PHPRPAPPPPLTAAPAPAATTTPRPRPPHHTTRTRRPTARASPRSCKMEAEKVLAALGGH 225
           P PRPAPPPP+  AP P  T TP P P    TRTR P     P +  +   +  A+    
Sbjct: 118 PPPRPAPPPPVAVAPRPTPTPTPTPTPTPTPTRTRAPRPSPPPEASPVSYPRYHAS---- 173

Query: 226 KLRRGAHQSNPFDGPP 273
                AHQ  P  GPP
Sbjct: 174 -----AHQRPPRGGPP 184

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 23/55 (41%), Positives = 25/55 (44%), Gaps = 3/55 (5%)
 Frame = +1

Query: 19  CQAATRRRAPHPRPAPPPPL---TAAPAPAATTTPRPRPPHHTTRTRRPTARASP 174
           C   T    P P P PPPP    T  P P+ T T RPRP   T R   P  R +P
Sbjct: 73  CPTPTPTLTPPPPPPPPPPPPAPTPTPTPSPTPTERPRP---TPRPDPPPPRPAP 124

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
 Frame = +1

Query: 40  RAPHPRPAP----------PPPLTAAPAPAATTTPRPRPPHHTTRTRRPTARASP 174
           R P P   P          PPP    P P    TP P P    T   RPT R  P
Sbjct: 63  RCPVPSTPPPCPTPTPTLTPPPPPPPPPPPPAPTPTPTPSPTPTERPRPTPRPDP 117

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 46  PHPRPAPPPPLTAAPAPAATTTPRPRPPHHT-TRTRRPTARASPR 177
           P P P P P LT  P P     P P PP  T T T  PT    PR
Sbjct: 70  PPPCPTPTPTLTPPPPPP----PPPPPPAPTPTPTPSPTPTERPR 110

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 92  HQRPP----PRLVLALLITPPARVALQHGHPR 175
           HQRPP    P + LALLIT PA +A+    PR
Sbjct: 175 HQRPPRGGPPLVTLALLITAPAVLAVAALRPR 206

>emb|CAE05503.1| OSJNBa0022H21.23 [Oryza sativa (japonica cultivar-group)]
          Length = 381

 Score = 36.2 bits (82), Expect(2) = 1e-05
 Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 8/58 (13%)
 Frame = +1

Query: 28  ATRRRAPHPRPAPPP----PLTAAPAPAATTTPRPRPP----HHTTRTRRPTARASPR 177
           A  R  P P P+PPP    P    P P   + P P PP    HH  R  R + +  P+
Sbjct: 3   AASRTWPPPTPSPPPFSSRPRVVGPPPPPPSDPPPPPPPHHHHHHRRRHRHSKKPKPQ 60

 Score = 32.3 bits (72), Expect(2) = 1e-05
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 162 TGIPAQLQDGGGEGAGGSGWAQAA----AWRASVQPVRWAARHHRLGQPCAERLPPHAGP 329
           + +P +L       AG S  A A+    AWR +++P+R AA  H  G+    R+   AG 
Sbjct: 90  SALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR----RVKHAAG- 144

Query: 330 RASALARAAGRLAELHARQDAAARRLHRPGRAGRLG 437
            A+A A A GR AE   RQ    R L    RA RLG
Sbjct: 145 -AAAAAGAEGRKAE---RQ----RALGLFQRAARLG 172

>ref|XP_316705.1| ENSANGP00000020897 [Anopheles gambiae] gi|21299352|gb|EAA11497.1|
            ENSANGP00000020897 [Anopheles gambiae str. PEST]
          Length = 1689

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 38/112 (33%), Positives = 49/112 (42%), Gaps = 4/112 (3%)
 Frame = +3

Query: 21   SGGYPPQGPASASGAASSVNGGASTSGHHHASSSPSSSHHPHASPYSTGIPAQL----QD 188
            S   PP GP +  G      G     GHHH SSSP++S   ++S  S G P  L      
Sbjct: 1148 SPNVPPGGPGTPGGG-----GYPGPGGHHHRSSSPANS---NSSGLSRGSPMHLSHHPST 1199

Query: 189  GGGEGAGGSGWAQAAAWRASVQPVRWAARHHRLGQPCAERLPPHAGPRASAL 344
             G  GAGGSG + AAA  A+        +  R   P     PP +   ++AL
Sbjct: 1200 PGAGGAGGSGSSSAAAAAAAAASAERDRQIMRQQSPHMTPPPPSSSAPSAAL 1251

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
 Frame = +3

Query: 24   GGYPPQGPASASGAASSVNGGASTSGHHHA-SSSPSSSHHPHASPYSTGIPAQLQDG--- 191
            GG   Q P ++S + SSV+  + + G+  +  SS  S +     P S    +  Q G   
Sbjct: 1394 GGSKSQQPQTSSSSTSSVSSLSGSGGNDRSKQSSSGSGNGGGGGPGSGHSNSSSQSGSSA 1453

Query: 192  ---GGEGAGGSGWAQAAAWRASVQPVRWAARHHRLGQPCAERLPPH 320
               GG G GG   + A        P      H   G P     PPH
Sbjct: 1454 GPPGGPGRGGPSPSGAGGPGMVGMPGGPPGGHPLSGSPFHPAGPPH 1499

>gb|AAK13108.1|AC078839_24 Red chlorophyll catabolite reductase [Oryza sativa]
           gi|31431822|gb|AAP53541.1| Red chlorophyll catabolite
           reductase [Oryza sativa (japonica cultivar-group)]
          Length = 372

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 31/72 (43%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -2

Query: 239 PRRSLCPPRAASTFSASILQLRGDARAVGR-RVRVV**GGRGRGVVVAAGAGAAVNGGGG 63
           PRR   PPR AS       ++R   R VG  R   +  GG G G     G+GA V GGG 
Sbjct: 56  PRRVPAPPRGASPAQGRRARVRARVRVVGAGRDGAI--GGGGGGGAPGGGSGARVPGGGA 113

Query: 62  AGRGCGALRRVA 27
           AGR    LRR A
Sbjct: 114 AGRAAAPLRRAA 125

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/62 (30%), Positives = 23/62 (36%), Gaps = 2/62 (3%)
 Frame = +1

Query: 40  RAPHPRPAPPPPLTAA--PAPAATTTPRPRPPHHTTRTRRPTARASPRSCKMEAEKVLAA 213
           R  H  P  PPPL A   P P     P P PP       R  + A  R  ++ A   +  
Sbjct: 25  RVVHAPPRAPPPLAAGDLPGPLHHLLPAPPPPRRVPAPPRGASPAQGRRARVRARVRVVG 84

Query: 214 LG 219
            G
Sbjct: 85  AG 86

>gb|AAK52126.1|AC079936_22 Putative red chlorophyll catabolite reductase [Oryza sativa]
          Length = 445

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 31/72 (43%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -2

Query: 239 PRRSLCPPRAASTFSASILQLRGDARAVGR-RVRVV**GGRGRGVVVAAGAGAAVNGGGG 63
           PRR   PPR AS       ++R   R VG  R   +  GG G G     G+GA V GGG 
Sbjct: 129 PRRVPAPPRGASPAQGRRARVRARVRVVGAGRDGAI--GGGGGGGAPGGGSGARVPGGGA 186

Query: 62  AGRGCGALRRVA 27
           AGR    LRR A
Sbjct: 187 AGRAAAPLRRAA 198

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/62 (30%), Positives = 23/62 (36%), Gaps = 2/62 (3%)
 Frame = +1

Query: 40  RAPHPRPAPPPPLTAA--PAPAATTTPRPRPPHHTTRTRRPTARASPRSCKMEAEKVLAA 213
           R  H  P  PPPL A   P P     P P PP       R  + A  R  ++ A   +  
Sbjct: 98  RVVHAPPRAPPPLAAGDLPGPLHHLLPAPPPPRRVPAPPRGASPAQGRRARVRARVRVVG 157

Query: 214 LG 219
            G
Sbjct: 158 AG 159



EST assemble image


clone accession position
1 CL78f04_r AV397195 1 207
2 HCL002f06_r AV639662 16 395
3 CL18c04_r AV394075 68 447




Chlamydomonas reinhardtii
Kazusa DNA Research Institute