KCC000307A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000307A_C02 KCC000307A_c02
ctaACTTATTGAACGCCAGCGTGCAGTTGCAAAAGCTCACAGCAGCTCCAAGAAAGGAGT
CCCGAAAGCCCTTTGCGCGAGAAATTGATATGCTGTCACCTTCTTAATAACACGTCAACC
AAGTTGCAGCACTATGAGCTCTTTGCTTTTGAGCAGAAGGGCCTCCGCTCAAGGGCTGTT
TCGTCGCGAGACGCCTAGCATCGCTTGGGCGCATGGGCGTTGCCACAGGGCACCTGTTCG
GCACCGGCCAGCATCGCGTTGTGGAGCAGCGCCCGTACTTGCTGTGACTATCCAGGACAC
GGTCCGACACTTCCTGCCCTTCCAGAACGGAAGCCCTGCGCCCGGCAACGTCACGAAGCT
GGAGGACGAAGGGTTGTTCAAAGGGCAGGTTGTATACTCAAAATTCACCTGGCCAGTGGT
ACTTGGCGGCGAGGAAGTATACATCTGGGGGAGCTTCAATGACTGGAGCAAGGGTGTGCG
ATTGCACAAAGTCGACCGGAACACCGACGCCACGGTCATTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000307A_C02 KCC000307A_c02
         (522 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB17344.1| putative receptor kinase [Oryza sativa (japonica...    39  0.041
ref|XP_323138.1| hypothetical protein [Neurospora crassa] gi|289...    35  0.59
dbj|BAA76365.1| cellulase [Irpex lacteus]                              34  1.0
ref|ZP_00137055.1| COG2171: Tetrahydrodipicolinate N-succinyltra...    34  1.0
ref|ZP_00028209.1| COG3505: Type IV secretory pathway, VirD4 com...    34  1.3

>dbj|BAB17344.1| putative receptor kinase [Oryza sativa (japonica cultivar-group)]
           gi|14090205|dbj|BAB55466.1| putative receptor kinase
           [Oryza sativa (japonica cultivar-group)]
          Length = 625

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 20/58 (34%), Positives = 29/58 (49%)
 Frame = +3

Query: 345 ATSRSWRTKGCSKGRLYTQNSPGQWYLAARKYTSGGASMTGARVCDCTKSTGTPTPRS 518
           AT R W    CS GR   Q + G +Y+++  YT    S+  A + D   ++  P PRS
Sbjct: 54  ATPRPWYNLSCSSGRAAIQINTGTYYVSSINYTGEVFSVVDATLQDDDTNSSCPLPRS 111

>ref|XP_323138.1| hypothetical protein [Neurospora crassa] gi|28922100|gb|EAA31360.1|
           hypothetical protein [Neurospora crassa]
          Length = 481

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 26/89 (29%), Positives = 42/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 242 HRPASRCGAAPVLAVTIQDTVRHFLPFQNGSPAPGNVTKLEDEGLFKGQVVYSKFTWPVV 421
           H P S   A   + V ++D    F      S    N + L++E   + +V  ++ T P  
Sbjct: 189 HTPGSPIIAPTDIGVPLEDADT-FTALTRRSSNLSNSSTLDEEDTEELRVDKTRPTVPTR 247

Query: 422 L----GGEEVYIWGSFNDWSKGVRLHKVD 496
           L    GGE+VY+ G+   W++  RLH V+
Sbjct: 248 LEWLRGGEKVYVTGTIFQWNRKTRLHPVE 276

>dbj|BAA76365.1| cellulase [Irpex lacteus]
          Length = 526

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -3

Query: 331 SVLEGQEVSDRVLDSHSKYGRCSTTRCWPVPN-RCPVATPMRPSDARRLATKQPLSGGPS 155
           S +EGQE S  V+ S+ K+G  ++T    + N   P   P+  S +    + QP    P+
Sbjct: 426 SQVEGQEGSSSVIYSNIKFGDLNSTFTGTLTNPSSPAGPPVTSSPSEPSQSTQP--SQPA 483

Query: 154 AQKQRAHSAATWLTC 110
              Q A +AA W  C
Sbjct: 484 QPTQPAGTAAQWAQC 498

>ref|ZP_00137055.1| COG2171: Tetrahydrodipicolinate N-succinyltransferase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 636

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 292 PGHGPTLPALPERKPCARQRHEAGGRRVVQRAGCILKIHLASGTWR--RGSIHLG 450
           PG G   PA+ E++  AR RH   GRR   RA   ++ H   G  R   G+ HLG
Sbjct: 91  PGAGAEQPAVAEQRRAARFRHRLAGRR---RAPAGIRRHARPGRLRAGAGAAHLG 142

>ref|ZP_00028209.1| COG3505: Type IV secretory pathway, VirD4 components [Burkholderia
           fungorum]
          Length = 647

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 25/80 (31%), Positives = 33/80 (41%)
 Frame = +1

Query: 190 DA*HRLGAWALPQGTCSAPASIALWSSARTCCDYPGHGPTLPALPERKPCARQRHEAGGR 369
           DA HR  A    +G     A +  W+  R  C     GPT P+L +R  C R  +  GG 
Sbjct: 15  DAEHRSEA---RRGGALWRAPVLWWAGVRPACIVGALGPT-PSLWQRSLCERAGNPQGGA 70

Query: 370 RVVQRAGCILKIHLASGTWR 429
            +  RA       +  G WR
Sbjct: 71  AMTMRAHVDTTPAIVVGVWR 90



EST assemble image


clone accession position
1 MXL025d08_r BP094595 1 457
2 HCL028d09_r AV641141 10 311
3 CL18c02_r AV394041 29 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute