KCC000294A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000294A_C01 KCC000294A_c01
atcagatcctgaggaagggaggggcatgtatgccgcatggcacggcgctgtgCAGGTAGG
CGGCGAATGCGTTGTGTGTCACTGGGATTGCCTGTACAGCCGCGAACTGTGTCGGCGGGA
TCACTGTGGCGTCAACGCATTGTGTGCGGTGTGAAGGCCATTGGAGCGGATGGCCAGTCG
GTGCAGAATGGCAGGCTGCACAGTTTTCAGACGACCCCGTATCAGAGCCTGATCGGACAT
GGCGGTTGCTGGGGCTCGAGAGAGAACAAAGCCTGCCCCCGTGGCACGGCACGAGAGAAG
AGTGAGAATCGCGAGAGTGAGTGAATCATGAGCTTGGTGCTTACGCGTTGCTCAGGGGCA
CCAGCTGGCGATGCTGGTGGGGAGAAGACAACACGATTACACGTTCGATGTGGTTGATGG
GTGATGTGGTTGACACGGATCGGTTCATGGATGTTGCTTTGTTCGCAGCATGTATTGGAT
GCCCGCCATCATTCGAGGCGCCCGATACAACACTTG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000294A_C01 KCC000294A_c01
(516 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC31628.1| unnamed protein product [Mus musculus] 35 0.43
dbj|BAC31589.1| unnamed protein product [Mus musculus] 35 0.74
dbj|BAC65726.2| mKIAA1107 protein [Mus musculus] 35 0.74
ref|ZP_00092490.1| COG0599: Uncharacterized homolog of gamma-car... 35 0.74
gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Can... 34 1.3
>dbj|BAC31628.1| unnamed protein product [Mus musculus]
Length = 340
Score = 35.4 bits (80), Expect = 0.43
Identities = 23/74 (31%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = -3
Query: 394 VLSSPHQHRQLVPLSNA*APSS*FTHSRDSH--SSLVPCHGGRLCSLSSPSNRHVRSGSD 221
V+S+ + R + ++N A + FTH +DSH SS++ G+ S S+P + GS
Sbjct: 188 VMSTAVKSRAVARITNGTASNKSFTHEQDSHGNSSVIKRGDGKGLSASAPQTAAKKRGSS 247
Query: 220 TGSSENCAACHSAP 179
G + SAP
Sbjct: 248 NGCTAAQPRTKSAP 261
>dbj|BAC31589.1| unnamed protein product [Mus musculus]
Length = 969
Score = 34.7 bits (78), Expect = 0.74
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 424 SPINHIERVIVLSSPHQHRQLVPLSNA*APSS*FTHSRDSH--SSLVPCHGGRLCSLSSP 251
SP + ++ ++ + R + ++N A + FTH +DSH SS++ G+ S S+P
Sbjct: 244 SPGQMVSNGVMSTAAVKSRAVARITNGTASNKSFTHEQDSHGNSSVIKRGDGKGLSASAP 303
Query: 250 SNRHVRSGSDTGSSENCAACHSAP 179
+ GS G + SAP
Sbjct: 304 QTAAKKRGSSNGCTAAQPRTKSAP 327
>dbj|BAC65726.2| mKIAA1107 protein [Mus musculus]
Length = 1240
Score = 34.7 bits (78), Expect = 0.74
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 424 SPINHIERVIVLSSPHQHRQLVPLSNA*APSS*FTHSRDSH--SSLVPCHGGRLCSLSSP 251
SP + ++ ++ + R + ++N A + FTH +DSH SS++ G+ S S+P
Sbjct: 241 SPGQMVSNGVMSTAAVKSRAVARITNGTASNKSFTHEQDSHGNSSVIKRGDGKGLSASAP 300
Query: 250 SNRHVRSGSDTGSSENCAACHSAP 179
+ GS G + SAP
Sbjct: 301 QTAAKKRGSSNGCTAAQPRTKSAP 324
>ref|ZP_00092490.1| COG0599: Uncharacterized homolog of gamma-carboxymuconolactone
decarboxylase subunit [Azotobacter vinelandii]
Length = 354
Score = 34.7 bits (78), Expect = 0.74
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 75 CVTGIACTAANCVGGITVASTHCVRCEGHWSG---WPVGAEWQAAQFSDDPVSEP 230
C T A +A C GG +A G W G WPV A W+ +F PVS P
Sbjct: 30 CTTAAASSARQCWGGSPMAPP------GRWPGSWRWPVSAAWRLPRF--PPVSAP 76
>gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Candida albicans]
Length = 1085
Score = 33.9 bits (76), Expect = 1.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Frame = -2
Query: 419 HQPHRTCNRVV---------FSPPASPAGAPEQRVSTKLMIHSLSRFSLFSRAVPRGQAL 267
HQP T N+ +PPA+P GAP+QR ++H+ + + VP+ Q
Sbjct: 648 HQPQHTQNQSPQLAQLPPHHSNPPANPHGAPQQRTGLPDLLHNSANIIIAPSQVPQPQQQ 707
Query: 266 FSLEPQQPP-CPIR 228
+ QQP P+R
Sbjct: 708 Y----QQPHIAPVR 717
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
CL17d02_r |
AV394143 |
1 |
516 |
2 |
HCL094g06_r |
AV644859 |
53 |
516 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute