KCC000279A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000279A_C01 KCC000279A_c01
GCTAGCTCTTCCCTGCCGTAAGGACAAGGCAGCTGCCGCCACCGCCACCACTGAAGTGCG
GCTACAAAAAGACTTTCAAGCGACTTCCACAGACTCGCACCAGCCCCTTCGCGGGCGCAC
TTGGCTCTAGGCCTCCTTTCTTTAGACACCAGCAAAGATGGGTCTGATGGTTTCTAAGGC
CCTCGAGCCCGGCTCTTTGGCAAGAAGGAGATGCGCATTCTGATGGTCGGTCTGGACGCC
GCTGGTAAGACTACCATCCTCTACAAGCTGAAGCTGGGCGAAATCGTGACGACTATTCCC
ACCATCGGCTTCAACGTGGAGACTGTGGAGTACAAGAACATCAGCTTCACCGTGTGGGAT
GTCGGTGGCCAGGACAAGATCCGCCCTCTGTGGCGGCACTACTTCCAGAACACTCAGGGC
CTCATTTTCGTCGTGGACAGCAATGACCGCGATCGTATTGGGGAGGCCAAGGATGAGCTG
CACCGCATGCTCAACGAGGACGAGCTGCGGGACGCCGTGCTGCTGGTCTTCGCCAACAAG
CAGGACCTGCCCAACGCCATGAACGCGGCGGAGATCACGGAGAAGCTGGGCCTGCACGGC
CTGCGCCAGCGCCACTGGTACATCCAGTCCACGTGCGCCACCAGCGGCGAGGGCCTGTAC
GAGGGCCTGGACTGGCTGAGCCAAAACATCCAGAACAAGTCGTGAGCGAGCGGAGTGGAT
AAGTGAGGCAGACTAGCGAGGTGTGGCCGATGAGGGCGTGGGCCATGGCTGCGGCCCCAG
GTACAGGAGTTCTGGTGGGTGGATGTGTCGGGATGCGTGGTGCGCGTCGGCATGCAGTCG
GGTGGTCATGCGCGGATAGCCATCGCAGCGCGGGCTCGCAATGCCATTAGCCTGCTAGTA
GATGTGCACATCGCGGGCATGTTAGATTGTTTAGGTCCGTTATGCTGAACCATTATTTCT
CCAGAAGAAGGCATGCAATACCCTGTCGCTTGCACGGTGACGCTTGACCCCTGGCATGGG
TAGTGCGGTGTTGTGGAGGGCTCTGCCATTTCAGGGCCCGCATGTAACTTTAACCGCATG
AAAAAAAAAAAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaactcgagactagtctcgtgc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000279A_C01 KCC000279A_c01
         (1172 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O48649|ARF_SALBA ADP-ribosylation factor 1 gi|2852443|dbj|BAA...   335  1e-90
pir||T52339 ADP-ribosylation factor [imported] - pepper gi|76437...   333  3e-90
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 gi|2129457|pir||S...   333  3e-90
emb|CAD12855.1| ADP-ribosylation factor [Gossypium hirsutum] gi|...   333  4e-90
dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica ...   332  8e-90

>sp|O48649|ARF_SALBA ADP-ribosylation factor 1 gi|2852443|dbj|BAA24696.1|
           ADP-ribosylation factor [Salix bakko]
           gi|29124981|gb|AAO63780.1| ADP-ribosylation factor 2
           [Populus tremuloides]
          Length = 181

 Score =  335 bits (858), Expect = 1e-90
 Identities = 162/171 (94%), Positives = 167/171 (96%)
 Frame = +1

Query: 190 RLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 369
           RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG
Sbjct: 11  RLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70

Query: 370 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEAKDELHRMLNEDELRDAVLLVFANKQDL 549
           QDKIRPLWRHYFQNTQGLIFVVDSNDRDR+GEA+DELHRMLNEDELRDAVLLVFANKQDL
Sbjct: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDL 130

Query: 550 PNAMNAAEITEKLGLHGLRQRHWYIQSTCATSGEGLYEGLDWLSQNIQNKS 702
           PNAMNAAEIT+KLGLH LRQRHWYIQSTCATSGEGLYEGLDWLS NI +K+
Sbjct: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181

>pir||T52339 ADP-ribosylation factor [imported] - pepper
           gi|7643794|gb|AAF65512.1| ADP-ribosylation factor
           [Capsicum annuum]
          Length = 181

 Score =  333 bits (854), Expect = 3e-90
 Identities = 162/172 (94%), Positives = 167/172 (96%)
 Frame = +1

Query: 187 ARLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 366
           +RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69

Query: 367 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEAKDELHRMLNEDELRDAVLLVFANKQD 546
           GQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA+DELHRMLNEDELRDAVLLVFANKQD
Sbjct: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129

Query: 547 LPNAMNAAEITEKLGLHGLRQRHWYIQSTCATSGEGLYEGLDWLSQNIQNKS 702
           LPNAMNAAEIT+KLGLH LRQRHWYIQSTCATSGEGLYEGLDWLS NI NK+
Sbjct: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181

>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 gi|2129457|pir||S66337 ADP-ribosylation
           factor 1 - Chlamydomonas reinhardtii
           gi|861205|gb|AAA92566.1| ADP-ribosylation factor
          Length = 181

 Score =  333 bits (854), Expect = 3e-90
 Identities = 161/172 (93%), Positives = 168/172 (97%)
 Frame = +1

Query: 187 ARLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 366
           +RLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct: 10  SRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69

Query: 367 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEAKDELHRMLNEDELRDAVLLVFANKQD 546
           GQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EA+DELHRMLNEDELRDAVLLVFANKQD
Sbjct: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQD 129

Query: 547 LPNAMNAAEITEKLGLHGLRQRHWYIQSTCATSGEGLYEGLDWLSQNIQNKS 702
           LPNAMNAAEIT+KLGLH LRQRHWYIQSTCATSGEGLYEGLDWLS N+ NK+
Sbjct: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANKT 181

>emb|CAD12855.1| ADP-ribosylation factor [Gossypium hirsutum]
           gi|28300416|gb|AAO37820.1| ADP-ribosylation factor
           [Gossypium hirsutum] gi|28630948|gb|AAO45616.1|
           ADP-ribosylation factor 1 [Gossypium hirsutum]
           gi|29028258|gb|AAO62348.1| ADP-ribosylation factor 1
           [Gossypium hirsutum]
          Length = 181

 Score =  333 bits (853), Expect = 4e-90
 Identities = 162/171 (94%), Positives = 166/171 (96%)
 Frame = +1

Query: 187 ARLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 366
           +RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69

Query: 367 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEAKDELHRMLNEDELRDAVLLVFANKQD 546
           GQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA+DELHRMLNEDELRDAVLLVFANKQD
Sbjct: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129

Query: 547 LPNAMNAAEITEKLGLHGLRQRHWYIQSTCATSGEGLYEGLDWLSQNIQNK 699
           LPNAMNAAEIT+KLGLH LRQRHWYIQSTCATSGEGLYEGLDWLS NI NK
Sbjct: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

>dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|7242921|dbj|BAA92519.1| unnamed protein product
           [Oryza sativa (japonica cultivar-group)]
          Length = 181

 Score =  332 bits (851), Expect = 8e-90
 Identities = 161/172 (93%), Positives = 167/172 (96%)
 Frame = +1

Query: 187 ARLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 366
           +RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct: 10  SRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69

Query: 367 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEAKDELHRMLNEDELRDAVLLVFANKQD 546
           GQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA+DELHRMLNEDELRDAVLLVFANKQD
Sbjct: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129

Query: 547 LPNAMNAAEITEKLGLHGLRQRHWYIQSTCATSGEGLYEGLDWLSQNIQNKS 702
           LPNAMNAAEIT+KLGLH LRQRHWYIQSTCAT+GEGLYEGLDWLS NI NK+
Sbjct: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKA 181



EST assemble image


clone accession position
1 HC020d02_r AV633396 1 615
2 LC026a03_r AV620723 2 623
3 HC011f03_r AV632705 10 569
4 HC013b05_r AV632831 20 619
5 MX001g05_r BP086091 23 559
6 HC056f03_r AV636216 42 558
7 CM027c09_r AV387596 63 664
8 CM099a08_r AV393109 86 735
9 HC006f09_r AV632316 97 557
10 LC092h07_r AV625458 100 527
11 LC020h11_r AV620354 102 655
12 LC054c12_r AV622774 102 670
13 CM053a10_r AV389901 102 497
14 LC044g05_r AV622147 105 609
15 LC072f04_r AV624075 105 633
16 LC031d02_r AV621109 105 619
17 LC081c06_r AV624690 105 618
18 MX233d02_r BP091070 105 547
19 LCL034a09_r AV627929 105 475
20 LC045h09_r AV622308 105 617
21 LC023c01_r AV620521 106 676
22 LC087a07_r AV625040 107 577
23 CM057h06_r AV390457 109 675
24 CM064e07_r AV390954 109 715
25 MX020e01_r BP086926 109 519
26 HC080f11_r AV638017 109 531
27 MX061b08_r BP088468 109 460
28 LC024d02_r AV620611 110 646
29 CM024f09_r AV388247 111 695
30 CM028h06_r AV387710 111 714
31 HC051d01_r AV635815 111 570
32 HC074h08_r AV637575 111 554
33 MXL028h05_r BP094755 111 350
34 CM066a11_r AV390854 114 732
35 CM016h10_r AV387454 114 694
36 LC071a04_r AV623959 114 374
37 CM069a02_r AV391171 114 656
38 LC039e09_r AV621678 116 531
39 CM085b08_r AV392361 118 658
40 CM003d08_r AV386591 118 592
41 LC040b02_r AV621719 119 650
42 CM046b09_r AV388021 119 682
43 HC043b12_r AV635197 121 627
44 LC099h02_r AV625920 122 610
45 HC009h12_r AV632583 126 550
46 LC091e01_r AV625359 127 607
47 LC088b08_r AV625121 128 627
48 HC055c02_r AV636106 132 657
49 CM057d12_r AV390443 132 750
50 MX007e06_r BP086376 133 617
51 CM074e08_r AV391536 134 757
52 CM064f08_r AV390994 134 761
53 CM063h03_r AV390047 215 820
54 CL59e07_r AV397913 226 762
55 LC080h01_r AV624657 234 750
56 LC016d03_r AV620018 259 778
57 HC027a01_r AV633922 331 550
58 LC022a10_r AV620429 664 1194
59 CL16a10_r AV394004 737 1187
60 CM084a01_r AV392612 1043 1286




Chlamydomonas reinhardtii
Kazusa DNA Research Institute